fshb (LOC100136594)


Basic Information

Item Value
gene id fshb
gene name LOC100136594
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 16609650 ~ 16614319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963146.1
GAGTTACAGACCTGAGCCTATCCGCGTACCAAAGGAGCTAAACCACTATATttacacatagacagacaggtaggaaaAACCTCACTATTCCAAGGCAACGGAGCTTAAGAGATTTGAGTCCACCCCCGTGCAAGGTTTAAGAAAGGTCCTTGTCGGATGAAAGCAGTCAAAGATGGAGCAATACCCGTATGATAATGTTTATAGGTGCTGAGAGGATAAAAGAGCTGGGGCAACCCTCCTTCGTCGCTAAATCAAAAGGGAGAACCCAACAGATTCCTGAAGGGACCTGTTCTCCTTGTGGAAGCATTATGTACTGCACCCACTTAAAGACGCTGCAGCTGGTCGTCATGGCAACGCTGTGGGTGACACCAGTGAGGGCGGGGACAGACTGCAGGTATGGCTGCCGACTAAACAACATGACCATcaccgtggagagagaggactgtcaCGGAAGCATCACCGTCACCACCTGCGCCGGCCTGTGCGAAACAACGGACCTGAACTATCAGAGCACATGGCTGCCGCGCTCCCAGGGGGTGTGTAACTTCAAGGAGTGGTCCTACGAGAAGGTCTACCTGGAAGGCTGTCCATCCGGGGTCAACCCCCTCTTCATACCCGTTGCCAAGAGCTGCGATTGCATCAAATGCAAGACGGACAACACCGACTGTGATCGCATAAGCATGGCAACACCCAGCTGCATAGTAAACCCACTAGAAATGTAATACTGTAGAGTTAGGCTGTTGCAGCAGCCACAGTTTGTTTAGCAATGGTTTGACTATTCTATGGTATCGTTTCCATTGTTGATGTGCTATTGCAATAAAACACTACTTTgagtaagtctaaaagta
>NM_001124586.1
GGACCTGTTCTCCTTGTGGAAGCATTATGTACTGCACCCACTTAAAGACGCTGCAGCTGGTCGTCATGGCAACGCTGTGGGTGACACCAGTGAGGGCGGGGACAGACTGCAGGTATGGCTGCCGACTAAACAACATGACCATcaccgtggagagagaggactgtcaCGGAAGCATCACCGTCACCACCTGCGCCGGCCTGTGCGAAACAACGGACCTGAACTATCAGAGCACATGGCTGCCGCGCTCCCAGGGGGTGTGTAACTTCAAGGAGTGGTCCTACGAGAAGGTCTACCTGGAAGGCTGTCCATCCGGGGTCAACCCCCTCTTCATACCCGTTGCCAAGAGCTGCGATTGCATCAAATGCAAGACGGACAACACCGACTGTGATCGCATAAGCATGGCAACACCCAGCTGCATAGTAAACCCACTAGAAATGTAATACTGTAGAGTTAGGCTGTTGCAGCAGCCACAGTTTGTTTAGCAATGGTTTGACTATTCTATGGTATCGTTTCCATTGTTGATGTGCTATTGCAATAAAACACTACTTTgagt
>TU2291975
TATGGCTGCCGACTAAACAACATGACCATcaccgtggagagagaggactgtcaCGGAAGCATCACCGTCACCACCTGCGCCGGCCTGTGCGAAACAACGGACCTGAACTATCAGAGCACATGGCTGCCGCGCTCCCAGGGGGTGTGTAACTTCAAGGAGTGGTCCTACGAGAAGGTCTACCTGGAAGGCTGTCCATCCGGGGTCAACCCCCTCTTCATACCCGTTGCCAAGAGCTGCGATTGCATCAAATGCAAGACGGACAACACCGACTGTGATCGCATAAGCATGGCAACACCCAGCTGCATAGTAAACCCAC

Function

NR:

description
follcle-stimulating hormone beta subunit precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963146.1 False 848 mRNA 0.49 3 16609650 16614319
NM_001124586.1 False 553 mRNA 0.52 2 16612372 16614306
TU2291975 True 316 TUCP 0.56 2 16612485 16614182

Neighbor

gene id symbol gene type direction distance location
LOC110506086 LOC106561929 coding upstream 99673 16457280 ~ 16509977 (+)
LOC110506293 LOC106561924 coding upstream 213476 16285292 ~ 16396174 (+)
csrp3 csrp3 coding upstream 376036 16226193 ~ 16233614 (+)
LOC110506289 LOC106561922 coding upstream 384573 16211595 ~ 16225077 (+)
dbx1a LOC106561921 coding upstream 709302 15896512 ~ 15900668 (+)
LOC110506299 LOC106561932 coding downstream 21770 16636089 ~ 16658715 (+)
LOC110506300 LOC106561933 coding downstream 47807 16662126 ~ 16745398 (+)
LOC110506305 LOC106561936 coding downstream 195614 16809933 ~ 16825580 (+)
LOC110506311 NA coding downstream 546969 17161288 ~ 17165567 (+)
LOC110506312 LOC106561942 coding downstream 551965 17166284 ~ 17171241 (+)
G2002930 NA non-coding upstream 99336 16510215 ~ 16510314 (+)
G2002998 LOC106561926 non-coding upstream 170939 16438066 ~ 16438711 (+)
G2002927 NA non-coding upstream 195160 16411504 ~ 16414490 (+)
G2002924 NA non-coding upstream 207311 16400249 ~ 16402339 (+)
G2002911 LOC106561923 non-coding upstream 364806 16244022 ~ 16244844 (+)
G2003127 ck046 non-coding downstream 2173 16616492 ~ 16617077 (+)
G2003175 NA non-coding downstream 158540 16772859 ~ 16774872 (+)
G2003178 NA non-coding downstream 164046 16778365 ~ 16778668 (+)
G2003184 NA non-coding downstream 172608 16786927 ~ 16787150 (+)
G2003185 NA non-coding downstream 173583 16787902 ~ 16788132 (+)
G2002823 NA other upstream 535606 16071987 ~ 16074044 (+)
LOC110506284 LOC106561914 other upstream 809577 15734525 ~ 15800073 (+)
G2002614 NA other upstream 913370 15689768 ~ 15696280 (+)
G1998628 NA other upstream 3386969 13222037 ~ 13222681 (+)
G1994851 NA other upstream 7043496 9560723 ~ 9566154 (+)
G2004946 LOC106587126 other downstream 1256240 17870559 ~ 17880793 (+)
G2006213 NA other downstream 2154814 18769133 ~ 18769500 (+)
LOC110506373 LOC106562010 other downstream 3865139 20479458 ~ 20482966 (+)
G2008616 NA other downstream 4099044 20713363 ~ 20713673 (+)
G2009636 NA other downstream 4998715 21613034 ~ 21613429 (+)

Expression


Co-expression Network