LOC100136077 (LOC100136077)


Basic Information

Item Value
gene id LOC100136077
gene name LOC100136077
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 17760662 ~ 17766644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124384.2
GGGGTGAGAAGGTTTGGTGATGTCCTAGGTTTTGCAAGGAGTTCTGTCTTAACCATCCGCAACAATGGGTCGAATACCCGCAACTCTCATTTTCACTCTACTATTTTCTTCTACTCTTCAGATCACCCTTTGTGAAAATGTATTTCTTAACAGCAAGGAGGCCTCACAGGTTTTTATCCGTGCTAAACGGGCAAATTCCTTCCTTGAGGAGTTGAAACCTGGGAACTTGGAACGGGAGTGCATCGAGGAGATCTGTGACCATGAAGAAGCCCGTGAAGTCTTTGAAAAGCCTGACAAGACGAAAGCCTTTTGGACCACCTATTTGGCTTGCAAAGGCACTTCACTGCTGAGAGCCAAGGACAGTATAAAAAAATTGAGAGGGTGTATTGATGCCAGTGGAGAGTGCTCAGTGGGCAATGGTGTGAACTACAACGGTACCATCTCCACTACTTCCTCAGGAAAAACATGCCAGTACTGGCGCAGTAACTTCCCACACAGAATTACGGAGTTCAATTCTTCGCTGGATGAGACCCTGTATGAGAACTATTGCAGGAACCCAGACAAAACTCCTGAAGGACCTTGGTGCTTCACCAGGGATCCCACAGTCAGGAGAGAGCAATGCACCGTCCCAAAATGTGGTGAGCCTTGGGTACCCCCAAAAGTAGCTGCTACAGTGGATAGGAAAGCCAAGTACACTAAGAAGGACTGCCTGGCCAACAATGGCTTGGATTATACAGGTGATCTCTCAGTTACCATGAATGGCAAAACGTGTCTGCCTTGGGCCTCCCCAAAGGCATTGGCACTCAGCAAAGGAAAGAATTTCATCCCAGAGGTCAAACTTGTGATGAACCACTGTAGAAACCCTGACGGAGATATGGAGGGACCCTGGTGCTATGTGGACCAGCATGGAAATACCACTGTGGACTACTGTGACCTTGAGATGTGTGATGACCCAATAGATAACTATGAGGAGGCGGCTGGCGGAAGGGAAAGAACAACACTCTCTGGGCCCAGACAATCCTTCTTCAGCCCTCAGAGCTTTGGCAGTGGAGAGCTGGTGTGCGGAGAGCGACCCATGTTTGAGAAGATAAGTAAGAAGGATGGTAGAGAGCAAGAACTGATTGACTCCTACCAAGGAGGCCGTATTGTTAAAGGGATTGACGCAGAAGTGGCCAGTGCACCATGGCAGGTGATGTTGTACAAGAAAAGCCCACAGGAGCTGCTGTGTGGGGCCAGTCTAATCAGTGATGAGTGGATCCTCACTGCAGCCCACTGCATCCTCTATCCACCATGGAACAAAAACTTCACCATTAATGACATCCTGGTCCGCCTTGGCAAACATAACAGAGCTAAGTTTGAGAAGGGCACAGAGAAGATTGTGGCTATTGATGAGATAATTGTCCACCCCAAGTACAACTGGAAGGAGAACCTGAACCGGGACATTGCTCTGCTGCACATGAGGAGGCCCATTACTTTCACAGATGAGATTCATCCTGTCTGTCTACCAACCAAGCAGGTTGCTAAGACACTGATGTTTGCTGGCTATAAAGGCCGTGTGACAGGCTGGGGGAACCTATATGAGACATGGAGTTCCTCCCCCAAGTCTCTACCCACAGTTCTCCAGCAGATCCATCTACCCATCGTTGAACAGGATATCTGCAGAGACTCTACCTCTATCCGCATCACTGACAATATGTTCTGTGCTGGCTTCAAACCAGAGGAACAGAAAACTGGTGACGCTTGTGAAGGGGACAGCGGTGGTCCCTTTGTCATGAAGAGCCCAGATGACAACCGTTGGTACCAGATCGGCATTGTGTCCTGGGGAGAAGGATGTGACAGGGATGGGAAATATGGATTCTACACCCATCTTTTCCGTATGAGACGGTGGATGAAGAAAGTTATTGACAAAACAGGCGGCGATGACGATGATTGATTGTTATTTCTTCTCATTTTTCTCTACATGCAAAGGAAACTGATGTAATATTGGAAATAAACATGCGTTCCTGAT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K01313 F2; coagulation factor II (thrombin)

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124384.2 True 2008 mRNA 0.48 14 17760662 17766644
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506325 LOC106587119 coding downstream 126 17753899 ~ 17760536 (-)
LOC110506327 LOC106561961 coding downstream 19882 17738091 ~ 17740780 (-)
LOC118944411 NA coding downstream 23587 17735138 ~ 17737075 (-)
LOC110506320 LOC106561953 coding downstream 110540 17628549 ~ 17650122 (-)
LOC110506319 LOC106561949 coding downstream 138448 17478926 ~ 17622214 (-)
LOC110506323 znf408 coding upstream 1049 17767693 ~ 17772129 (-)
LOC110506328 LOC106587122 coding upstream 14328 17780972 ~ 17798469 (-)
LOC110506334 LOC106587126 coding upstream 103901 17870545 ~ 17880808 (-)
trnaa-ugc-182 NA coding upstream 106343 17872987 ~ 17873062 (-)
LOC110506335 LOC106561969 coding upstream 140040 17906684 ~ 17908121 (-)
G2005136 LOC106561954 non-coding downstream 25591 17730569 ~ 17735071 (-)
G2005134 NA non-coding downstream 33356 17727066 ~ 17727306 (-)
G2005133 NA non-coding downstream 33698 17726500 ~ 17726964 (-)
G2005131 NA non-coding downstream 35601 17724609 ~ 17725061 (-)
G2005096 NA non-coding downstream 81456 17678852 ~ 17679206 (-)
G2005139 NA non-coding upstream 18279 17784923 ~ 17785196 (-)
G2005140 NA non-coding upstream 18848 17785492 ~ 17785695 (-)
G2005145 NA non-coding upstream 32978 17799622 ~ 17799857 (-)
G2005166 NA non-coding upstream 120801 17887445 ~ 17890081 (-)
G2005193 NA non-coding upstream 137623 17904267 ~ 17904500 (-)
G2003819 LOC106561933 other downstream 1036980 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 1801097 15900960 ~ 16211028 (-)
G2003219 LOC106561912 other downstream 2042354 15715548 ~ 15718308 (-)
LOC110506276 LOC106587060 other downstream 3127054 14613586 ~ 14678505 (-)
G2000879 NA other downstream 3481916 14278141 ~ 14278746 (-)
G2005456 LOC106561978 other upstream 427466 18194110 ~ 18199589 (-)
G2005584 NA other upstream 467630 18234274 ~ 18234536 (-)
G2009991 NA other upstream 3867635 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 4636374 22402983 ~ 22405876 (-)

Expression

LOC100136077(LOC100136077) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4000.
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LOC100136077(LOC100136077) Expression in each Bioproject

Bar chart with 21 bars.
LOC100136077(LOC100136077) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150000.
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Co-expression Network