Item | Value |
---|---|
gene id | itfg1 |
gene name | itfg1 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048590.1 |
NCBI id | CM023244.2 |
chromosome length | 51113553 |
location | 19671648 ~ 19791378 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
itfg1 | Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1). |
description |
---|
T-cell immunomodulatory protein-like isoform X1 |
id | description |
---|---|
K17257 | ITFG1; integrin alpha FG-GAP repeat containing protein 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_002470956.2 | False | 3422 | mRNA | 0.46 | 17 | 19671648 | 19791378 |
XR_005039670.1 | False | 3542 | mRNA | 0.46 | 19 | 19671651 | 19791378 |
XM_036963415.1 | True | 3277 | mRNA | 0.45 | 18 | 19671656 | 19791378 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118944408 | NA | coding | upstream | 40634 | 19629161 ~ 19631075 (+) |
cdh8 | LOC106561990 | coding | upstream | 520612 | 19061132 ~ 19151036 (+) |
cdh11 | LOC106561988 | coding | upstream | 814369 | 18773403 ~ 18857279 (+) |
tk2 | LOC106587284 | coding | upstream | 1346653 | 18320721 ~ 18324995 (+) |
cmtm4 | LOC106561981 | coding | upstream | 1359941 | 18283846 ~ 18311707 (+) |
LOC110506357 | neto2 | coding | downstream | 574 | 19791952 ~ 19809048 (+) |
LOC110506360 | dnaja2 | coding | downstream | 18710 | 19810088 ~ 19815253 (+) |
LOC110506362 | LOC106587296 | coding | downstream | 48993 | 19840371 ~ 19847007 (+) |
LOC110506364 | LOC106562001 | coding | downstream | 59053 | 19850431 ~ 19888739 (+) |
vps35 | vps35 | coding | downstream | 100883 | 19892261 ~ 19907886 (+) |
G2007356 | NA | non-coding | upstream | 59202 | 19586718 ~ 19612446 (+) |
G2007355 | NA | non-coding | upstream | 85656 | 19585784 ~ 19585992 (+) |
G2007317 | NA | non-coding | upstream | 114597 | 19556801 ~ 19557051 (+) |
G2007311 | NA | non-coding | upstream | 118624 | 19552731 ~ 19553024 (+) |
G2007487 | NA | non-coding | downstream | 76651 | 19868029 ~ 19868515 (+) |
G2007488 | NA | non-coding | downstream | 77424 | 19868802 ~ 19869157 (+) |
G2007492 | NA | non-coding | downstream | 80433 | 19871811 ~ 19872143 (+) |
G2007493 | NA | non-coding | downstream | 87481 | 19878859 ~ 19879070 (+) |
G2007496 | NA | non-coding | downstream | 94399 | 19885777 ~ 19885976 (+) |
G2006213 | NA | other | upstream | 902148 | 18769133 ~ 18769500 (+) |
G2004946 | LOC106587126 | other | upstream | 1790855 | 17870559 ~ 17880793 (+) |
fshb | LOC100136594 | other | upstream | 3057466 | 16609650 ~ 16614319 (+) |
G2002823 | NA | other | upstream | 3597604 | 16071987 ~ 16074044 (+) |
LOC110506284 | LOC106561914 | other | upstream | 3871575 | 15734525 ~ 15800073 (+) |
LOC110506373 | LOC106562010 | other | downstream | 688080 | 20479458 ~ 20482966 (+) |
G2008616 | NA | other | downstream | 921985 | 20713363 ~ 20713673 (+) |
G2009636 | NA | other | downstream | 1821656 | 21613034 ~ 21613429 (+) |
G2009769 | NA | other | downstream | 2046345 | 21837723 ~ 21838158 (+) |
G2009770 | NA | other | downstream | 2047325 | 21838703 ~ 21839241 (+) |