cdca9 (LOC106562035)


Basic Information

Item Value
gene id cdca9
gene name LOC106562035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 19818632 ~ 19821594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585927.2
TGGTAGCAGGGGGAAAAAAGGCACACTGATGAAACCATGGCACCAAGAAGGATAAGGAAAGTCAGCAATCAGTCAGATGGGCAAATTAGCAAGGAGATACGCCAAAAGCAAGGGGTGCTTTTTATTCAACAGTTTGAGAAAGAAGCGGATGACATTTCTGCAGGTGAAGTCACCATCGCCATAAAGACCGAATCACCCGAGATTCACCAGCCTCTCACTAGGAAGCTTAGTAAAGTGAAAGTGAGTGAAGGTGCATCGGCTCATAAAAGGAAGGCTACAACAGAACCATCAAAGGGTTCCAAGAAAGCCAGGTCACTTGCCAATAGCTCCAGCACTGGAAGCCTACGGTGTGccacacccacaaacacaaaaaGAACCAAAACTCGTCTTGCCAAAATCAGTGATCAGTctccactgactggaacgaaacCCAGATCTGTTTTGCGCTCAGCCAGTGACGACTACCTGTATTGCTCCCTGCCTGGATTGTCTCCACATGTAatgatctctacatcccatggaGAGACATTGTGCCTCTCGGATGATACTGTTGAAGATGTCGACATCGGGTTACTGGATGACATGGCTGTCCTCCAGATGCAGAAGTTGATGAAACTGATGGACTACCTTTTCAACAAAGTCAAAGCGAATCAGCCTCTGAGTGTGCAATGATACCAACACAGCTAATATTGAGCCACTAATGCCACCTATGCATGTTTTACTTATTATAAATAAAGATTTGTATATTCGTCTTGA
>XM_021585926.2
CAGTGTTCAGGAGATGTGGTAGCAGGGGGAAAAAAGGCACACTGATGAAACCATGGCACCAAGAAGGATAAGGAAAGTCAGCAATCAGTCAGATGGGCAAATTAGCAAGGAGATACGCCAAAAGCAAGGGGTGCTTTTTATTCAACAGTTTGAGAAAGAAGCACAGGACCGTATAAATGAGATGGAGGCTAAATTGGAGCAGACTCTTGCAACAGTCGATCGGGTTTTTAAAGTGGAATTGATGAAAATGCCACCTGCGCTTCAAAAAACAGTGATAATAGATTTAATTAATGCGGATGACATTTCTGCAGGTGAAGTCACCATCGCCATAAAGACCGAATCACCCGAGATTCACCAGCCTCTCACTAGGAAGCTTAGTAAAGTGAAAGTGAGTGAAGGTGCATCGGCTCATAAAAGGAAGGCTACAACAGAACCATCAAAGGGTTCCAAGAAAGCCAGGTCACTTGCCAATAGCTCCAGCACTGGAAGCCTACGGTGTGccacacccacaaacacaaaaaGAACCAAAACTCGTCTTGCCAAAATCAGTGATCAGTctccactgactggaacgaaacCCAGATCTGTTTTGCGCTCAGCCAGTGACGACTACCTGTATTGCTCCCTGCCTGGATTGTCTCCACATGTAatgatctctacatcccatggaGAGACATTGTGCCTCTCGGATGATACTGTTGAAGATGTCGACATCGGGTTACTGGATGACATGGCTGTCCTCCAGATGCAGAAGTTGATGAAACTGATGGACTACCTTTTCAACAAAGTCAAAGCGAATCAGCCTCTGAGTGTGCAATGATACCAACACAGCTAATATTGAGCCACTAATGCCACCTATGCATGTTTTACTTATTATAAATAAAGATTTGTATATTCGTCTTGA

Function

NR:

description
borealin-2-like isoform X1

GO:

id name namespace
GO:0043229 intracellular organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585927.2 False 756 mRNA 0.45 9 19818632 19821578
XM_021585926.2 True 904 mRNA 0.44 10 19818632 19821594

Neighbor

gene id symbol gene type direction distance location
phkb phkb coding downstream 147036 19611688 ~ 19671596 (-)
adamts18 LOC106561991 coding downstream 282347 19483469 ~ 19536285 (-)
LOC110506226 NA coding downstream 476548 19328849 ~ 19342084 (-)
LOC110506352 LOC106561987 coding downstream 1399881 18406415 ~ 18418751 (-)
LOC110506088 LOC106561986 coding downstream 1429654 18332630 ~ 18388978 (-)
gpt2 gpt2 coding upstream 2369 19823963 ~ 19835140 (-)
orc6 orc6 coding upstream 67100 19888694 ~ 19892061 (-)
hrh3 LOC106562003 coding upstream 86784 19908378 ~ 19910488 (-)
LOC110506369 LOC106562006 coding upstream 371066 20192660 ~ 20197141 (-)
LOC110506374 LOC106562011 coding upstream 660765 20482359 ~ 20486561 (-)
G2007679 dnaja2 non-coding downstream 6149 19811646 ~ 19812483 (-)
G2007686 LOC107701234 non-coding downstream 31819 19782948 ~ 19786813 (-)
G2007717 NA non-coding downstream 48153 19769376 ~ 19770479 (-)
G2007702 NA non-coding downstream 80836 19736969 ~ 19737796 (-)
G2007670 NA non-coding downstream 106138 19712162 ~ 19712494 (-)
G2007683 NA non-coding upstream 272 19821866 ~ 19857787 (-)
G2007763 NA non-coding upstream 52942 19874536 ~ 19874852 (-)
G2007764 LOC106562001 non-coding upstream 54139 19875733 ~ 19876017 (-)
G2007765 LOC106562001 non-coding upstream 55158 19876752 ~ 19877290 (-)
G2007770 NA non-coding upstream 60630 19882224 ~ 19883187 (-)
G2005584 NA other downstream 1584096 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 1619043 18194110 ~ 18199589 (-)
G2005166 NA other downstream 1928551 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3094950 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 3859067 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1812685 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 2581424 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 3424190 23245784 ~ 23247139 (-)
G2012712 NA other upstream 4384686 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4674719 24486973 ~ 24599682 (-)

Expression


Co-expression Network