gpt2 (gpt2)


Basic Information

Item Value
gene id gpt2
gene name gpt2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 19823963 ~ 19835140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585923.2
CTGAACGTTGCAGTAGAACCCCGTTTGGGTGATATTACTCTAACAATTGAAATACATGTCACATCAGGTGGggccattctagccaatgagagggaaGATACATGTCAGAAGAACAACGTTTGTTTTTGCcaggatgtcacgtgtcctataTCAGTACACCCCTAACAACTACGAAACAAATGTTAGATTAAATAAGCCTCACGTAGCAATTAAGCAATTCCATTTATTTGtagaccaaattcgacactctctTTGACCTCTATACTAAAACTCCTCGCTGAGTGAGCGGAAAAAACGAAACAtcgccacctgctggagaagaTAAATTTCGTGCCCAGTTATCCCTCTCGCATCGCCTCTTCCTCATATTGCCGTTCTTCAAGTACAGCTAGCATTAATTTCCCTCGTCGTGGTTCAAACTAACCTGCTGCATCGACTTCAACATCATGCATCGACTTCAACACTTGGCAAATAGATCATTGATTGCTGGTGTTTTTGACCAGTCTCCAGCCCTTGTGCGGACAAAGGCTTGGGAGACCGCATGTTTAGTGCAGTCCATACGACTCAAAACACAAGGACCGGTTGAACAGTATGGACTGAAGCGATTCAGTACAGCTGAGGCAACCGTGATTTTGAGAGAGAACGGCAAGATGCGAGAAAAGACTCTGACCATGGACACCCTCAATCCGCAGGTGAAAGCTGTGGAGTACGCTGTGAGAGGACCCATTGTCACGAAGGCTGGGGACATCGAGAGAGGCTTGCAGCAGGGTCAGAAACATCCCTTCACTGAGGTCATCAAAGCCAACATTGGAGATTCACATGCCATGGGGCAGAAGCCAATCACGTTTCTCCGTCAGGTGGTGGCTCTCTGCTCATTCCCAGAGCTGTTGAACAGCCCTAGTTTCCCAGAGGATGCCAAACAACGTGCCCGTCGCATCCTACAGGGCTGCGGGGGACAGAGcttggGGTCGTACAGTGCCAGCCAGGGAGTGGACTGTATTCGGCAGGACGTTGCTGTCTACATAGAGCAACGGGATAAGGGCGTGCCTGCCGACTGGGACAATATTTACCTAACCACCGGAGCTAGTGATGGCATTGTGagcATCTTGAAAATGCTGGTGTCGGGCCAGGGCCGGTCCAGGAGTGGTGTGATGATCCCCATCCCTCAGTACCCCCTGTACTCTGCAGCCATCTCTGAGTTGGAGGCCGTTCAGATCAACTACTACCTGGACGAGGACAACTGCTGGGCCCTGGATATCAACGAGCTCCACAGAGCCTACCAGGCTGCCAAGGAGCACTGTCACCCCAGAGTCATCTGCATCATCAATCCAGGCAACCCTACCGGTCAAGTGCAGAGTAggaagtgcatcgaggacgtcctCCACTTTGCATACGAGGAGAATCTGTTTGTTATGTCCGATGAGgtgtaTCAGGACAACGTGTACTCCCCAGACCTTCAGTTCCACTCCTTTAAGAAGGTGCTCTATGAGATGGGCCCTGAGTACTTCAACACTGTCGAGCTGGCCTCATTTCACTCCACCTCCAAAGGATACTCAGGAGAGTGTGGGTTCAGAGGGGGATATATGGAGGTTCTCAACCTCGACCTGGAGGTCAAGGCCCAGCTggtgaagctgctctctgtgaGGCTGTGTCCCCCTGTCTCTGGACAGGCTGCCATGGATGTCATCGTCAACCCTCCTCTGCCACACGAACCCTCCTACCTCCAGTTCCACAAGGAGAAGAGCGCTGTGCTTGGAGCTCTGGCTGAGAAGGCCCAGGTGACCGAGCAGACCCTCAACACGGTGCCTGGGATCAAATGTAACCCTGTGCAGGGAGCCATGTACGCCTTCCCACGCATCTTCATACCCCCACGAGCTGTGGAGGAGGCCAAGTCCCTGGGAATGTCTCCTGACATGATGTACTGTCTGAGACTGCTTGAGGAGACTGGCATCTGCCTTGTTCCAGGCAGTGGCTTCGGCCAGAGGGAAGGGACCTATCACTTCAGAATGACCATTCTGCCCACGACAGAGAAGCTGAAGGTGCTCCTGGAGAAGCTCCGGGATTTCCACATCAAGTTTCTGAAGGAGTACGCGTCACTGGAGGAACCAAAGAGATGAGAGTCCAGAGGATGACACTCGGGACTCACTAGAACAGTTCAGATAGTCCCAGTTTGAGAACGTTTAACACGCGTAACAAAAACAGCGTTTACGGAGGTATCGACTAACGCTCATGTAAAGAAAGTAACCCCTTTTTTAACTATACTAGTGTAACCTATGATTGCTTGACGTTTTATCTGATTTTAGGAACAGTACTTGTGTTTTTAAGAGACATTGTGCCTTTGTCAGACGAGGTAAAAGTGTGGGGAGAAACGATGCCGTCTGTACAGAgatgttaaaggggcaatctgcagttgccaCAAACATCTTAGGGCTTATAAATGAAATTGTAAATCGATGTACCcatttgattcttgaagaatacaaCTTGGGCATGCCTCATAAGCTGTCGTACCCGatcataacccaaaatataagcttcgtaaatgtaaacaaacactatatagccttaacatggttaaaactgtaatgttgatatcatggatgatcagtccttgcatccatagctctggcTATGAATTTGGTTACAATTCTCCAATCCCATCCCTCAGATTTTTATTGAAACTGGCAGTGAGGACGTTTTATTGTAACTACaactgattgcccctttaacactAAAGCAATGTACTTTGTGATGTACTCAAAGGTGCTCTATTATAGAGGAGGCACTGGGAAATGGGacacaatgttctgatgacatttTCTCTAGCACTCCATTTACTTGTTTTTGTGCCCGAGAAGTTTACACTGTTTTGTATTTTCTATCTGTCTTGAGTCTTTTCTGTCTCCTTAAGAGGCATTTTGTGTGAGAGCTCGACGCAATGGGGCACTGTAAAGTGCAAATATTATCTTAGAACCAGCTGTACCTTTTTCAGTGTGCCAAATAGAACAGGGGTTGTTTATGTAGGTCATGGACTCCGGGACAATGAGTGCTGCTACATCAGCTCTTGTCCAAAACCCATTTCTAACATAACATCCTATCAGTCCAAGTCATACAGCTTTGAGCCTGCGTAGCTTCCTGTTGGGCACATGTTTACCCACACAGTACACTGATCTGAGGTGTCTGTTGCACTtggatagttttttttttttttttttttttttttttttttttttggagggtGAATGTCTGTACTCTCGGGTGCCTAGTTGGAAGGAAATGCAGTTGTTTTGTGTGCTACTAATTGAAGAGTTAAGGGAAATGTAGGTTCTGGTAATTCTGTATATCGGCCTTGTCCCCATATTAGGCTATTTATTGCATAGATTGTTTACGCTTTTTACTGACGGTGGCTGTCACtcacatttgtatcacaactgaGAAAGGGAGTACGGTTACATCTCAGATGGTGGGTTGAATGcacttttgtttttttgtttgtaaaatGTTTGTGGGAAACCTTCTGCCCGTATCTATCTTTCTGCAAACTGCAGGAAATGTCATTGTGAAGTGAAACACTACAATTTAATTTTTTGTAGGTGGGAGATGAGCGCAGTGACCCACATAAGGCTGTCTAAAAGCTTCAGTTAAACCAATGAATTCAGGCAACTTTTATTCTGACACCAAAACATCTCATTTCTATTTTTGTATGCAATTTAATGCTGAATGACCTTGGCAGCCATTCAATGTATCAAACTCGACTGACCTCAAAACATGAATTGTTTTTAACCATTTGACAGCAATGAGGTGCCTTCAATGGTGACAAGCTATAATTTACATTGAGTGGCTTTTGAGAATGTCAGCAAATTGATATTTTatgaatgatttaaaaaaaaaaaagtatgcacA

Function

symbol description
gpt2 Predicted to enable catalytic activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process. Is expressed in several structures, including axial chorda mesoderm; axis; immature eye; musculature system; and nervous system. Orthologous to human GPT2 (glutamic--pyruvic transaminase 2).

NR:

description
alanine aminotransferase 2 isoform X1

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585923.2 True 3903 mRNA 0.46 11 19823963 19835140

Neighbor

gene id symbol gene type direction distance location
cdca9 LOC106562035 coding downstream 2369 19818632 ~ 19821594 (-)
phkb phkb coding downstream 152367 19611688 ~ 19671596 (-)
adamts18 LOC106561991 coding downstream 287678 19483469 ~ 19536285 (-)
LOC110506226 NA coding downstream 481879 19328849 ~ 19342084 (-)
LOC110506352 LOC106561987 coding downstream 1405212 18406415 ~ 18418751 (-)
orc6 orc6 coding upstream 53554 19888694 ~ 19892061 (-)
hrh3 LOC106562003 coding upstream 73238 19908378 ~ 19910488 (-)
LOC110506369 LOC106562006 coding upstream 357520 20192660 ~ 20197141 (-)
LOC110506374 LOC106562011 coding upstream 647219 20482359 ~ 20486561 (-)
zgc:162297 LOC106562013 coding upstream 654809 20489949 ~ 20493240 (-)
G2007679 dnaja2 non-coding downstream 11480 19811646 ~ 19812483 (-)
G2007686 LOC107701234 non-coding downstream 37150 19782948 ~ 19786813 (-)
G2007717 NA non-coding downstream 53484 19769376 ~ 19770479 (-)
G2007702 NA non-coding downstream 86167 19736969 ~ 19737796 (-)
G2007670 NA non-coding downstream 111469 19712162 ~ 19712494 (-)
G2007763 NA non-coding upstream 39396 19874536 ~ 19874852 (-)
G2007764 LOC106562001 non-coding upstream 40593 19875733 ~ 19876017 (-)
G2007765 LOC106562001 non-coding upstream 41612 19876752 ~ 19877290 (-)
G2007770 NA non-coding upstream 47084 19882224 ~ 19883187 (-)
G2007768 NA non-coding upstream 52855 19887995 ~ 19888366 (-)
G2005584 NA other downstream 1589427 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 1624374 18194110 ~ 18199589 (-)
G2005166 NA other downstream 1933882 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3100281 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 3864398 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1799139 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 2567878 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 3410644 23245784 ~ 23247139 (-)
G2012712 NA other upstream 4371140 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4661173 24486973 ~ 24599682 (-)

Expression


Co-expression Network