orc6 (orc6)


Basic Information

Item Value
gene id orc6
gene name orc6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 19888694 ~ 19892061 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585931.2
ATGTATGTAAATATATTGTGAGTAGATCATTTGATGCTCAATtctctttgtaaaaaaaaagtgtttgtaTTCTGTTGTTCTTTTCAGCAACAAGTACGCAAACAAACGTCGTATCGTCATAGCCAATAGAATGTCGAAAGATGGCTGGTGGGCGTGATGGCGTCGGACATTTTGGCCGCGAGGGTCTTGCAAGTTTTTGTGTCTGACTACTCGATTGGAGGTCTTTGTTTTTTATTCTCTCGTTGTCAGTCACGAACATTTGTTATTTACTGGAAATGGAAAAAGAACTGTTTACTAAACTTGCATCTAAAATGGGTATAACCTCTGCAAGAATTCTAAGCCAAGCAGAGGAGTACATGCGGTTATCCCTGGTTAGATGTACAGGACTCAAAAATACTACGGGTACAAGCAAAGCAATAATTTGTCTTGAGCTGGCAGCAAAATCAATGAAGTTACCCCTGGACAAAGAATATACCGTCAAATTATCCGGGTTGAAAAATAAGCAGTATCAAAGCACTCTGAAGGCCATAGAATGCATGCTTGGCCTTGATTCTCACCTGGGACTCCGAGACCTTGCTGTTCAGTTTGGGTGCATGGATGCAGTCAAAGTAGCAACCAAAATACTAGAACGGTATGAAGCAAGCCTTCCTGCTGCTCAGCAGAAAAATGTGGACCTGTCAAAACCACTCTTCACTACAGCTGCTTTGAACGCTGCATGCAAATGCTTGAAGATCAAAGTGGACAGGAAGCTGGTCGCATCATCTGGTGCTAAAAAGGGAATCTTTGACAGGCTGTGCACCCAGCTCCAGAAACTGGGGCAGGACATCTGCGAAGAAGCCACTCCACTGAAGAATCCAGTTAAAATGTCACAGAAAAGAACGAACACACTCATGGAAAGTACTGAACAAAAAGAGGAAGAGGAAGATCTGCCAATGTCTCAAAAGCAGCTGAAAGTGGACTCTGGGGAGAGTGCAACAGAGGATTACGAAGAGTGGAAGCGAAGAATCTTGGAAAATGCCCTTAAAGCCAAACATGCCAATGCATGAAAGTTAATTTGAAATTCATTGCTGTTTATATATTAAGAAAGAGTGTCATGGCTGAGCTGATTGAGGGGAAAGGTTCTCACAAGCTTGGGCATGTGATCAGTGAAAATGCTGTATACAGTGCTGAGTGAGGCTGGAGCTCTCGTTTTCTTTGAATGTGAACGCTAATGAGCAGGTACAAGTCTGCTAAGGAAGCACACAGCAGCTCCATAtctgatttatttcagtttttggAGAAGGGTAACTGAAAGGGGTGTTTTTTATtagtgtttatttttatttgatcatTGTTTGTTTCAACCATGGTTATTTTATGCTATAAGCAAGCATGAAACGTTTCTATTCAAACAGTACATTGACTTGTCTGCCCCTCAGTGGTCATGTGTGAGATGTACTCTTAAGAGAATTCTGCTGGTCTACGTGTTGGAATTGTACAGTTTTAAGATGAACATTCTGTGGTGTTTTAAAACGGCTAACTACAATTTCCCTCATTTTGTAAAATCATAATTTATGGTGGATTATAGACCGTTTTAACAGTTGGCAGCTGGCATCAACTGTTTTTTATTTAGACCACATTGAGTACCACAGTATTGAGTCGAATGGTTCGAATTGTTTTTAATGTTTCCATCTGGGATTTTCGAAATACTTAATATAAgttctgtgtttcgtgtaggcttaccccggcgtgacgttttgataactgcacaaatctctctcggacaaggtaaTGTATCAATACTTAGCATTGCGAAAATTGAGGCGAATGTATTGATTAAaactcaccttgtccgagagaatAACACAGCTATCAAAACGGCACGCGAAGGTAAACCTACACCGAACACAAAATGAATTAGAATTTGTCAAATTCACAACGTGAAAAATGAATGGCGGGAAAAACCATTGTAACCATTTTTGTGTTTATGGGTGTTATGACGCTTCTGTGTTGGGACTATTGACAATAGTAGAAGTCGGTGTCCTTTTGTGGCTTCACTTATTTTAATAAATGAACATTTATAGTCA
>XM_021585934.2
TGTGATGTATGTAAATATATTGTGAGTAGATCATTTGATGCTCAATtctctttgtaaaaaaaaagtgtttgtaTTCTGTTGTTCTTTTCAGCAACAAGTACGCAAACAAACGTCGTATCGTCATAGCCAATAGAATGTCGAAAGATGGCTGGTGGGCGTGATGGCGTCGGACATTTTGGCCGCGAGGGTCTTGCAAGTTTTTGTGTCTGACTACTCGATTGGAGGTCTTTGTTTTTTATTCTCTCGTTGTCAGTCACGAACATTTGTTATTTACTGGAAATGGAAAAAGAACTGTTTACTAAACTTGCATCTAAAATGGGTATAACCTCTGCAAGAATTCTAAGCCAAGCAGAGGAGTACATGCGGTTATCCCTGGTTAGATGTACAGGACTCAAAAATACTACGGGTACAAGCAAAGCAATAATTTGTCTTGAGCTGGCAGCAAAATCAATGAAGTTACCCCTGGACAAAGAATATACCGTCAAATTATCCGGGTTGAAAAATAAGCAGTATCAAAGCACTCTGAAGGCCATAGAATGCATGCTTGGCCTTGATTCTCACCTGGGACTCCGAGACCTTGCTGTTCAGTTTGGGTGCATGGATGCAGTCAAAGTAGCAACCAAAATACTAGAACGGTATGAAGCAAGCCTTCCTGCTGCTCAGCAGAAAAATGTGGACCTGTCAAAACCACTCTTCACTACAGCTGCTTTGAACGCTGCATGCAAATGCTTGAAGATCAAAGTGGACAGGAAGCTGGTCGCATCATCTGGTGCTAAAAAGGGAATCTTTGACAGGCTGTGCACCCAGCTCCAGAAACTGGGGCAGGACATCTGCGAAGCCACTCCACTGAAGAATCCAGTTAAAATGTCACAGAAAAGAACGAACACACTCATGGAAAGTACTGAACAAAAAGAGGAAGAGGAAGATCTGCCAATGTCTCAAAAGCAGCTGAAAGTGGACTCTGGGGAGAGTGCAACAGAGGATTACGAAGAGTGGAAGCGAAGAATCTTGGAAAATGCCCTTAAAGCCAAACATGCCAATGCATGAAAGTTAATTTGAAATTCATTGCTGTTTATATATTAAGAAAGAGTGTCATGGCTGAGCTGATTGAGGGGAAAGGTTCTCACAAGCTTGGGCATGTGATCAGTGAAAATGCTGTATACAGTGCTGAGTGAGGCTGGAGCTCTCGTTTTCTTTGAATGTGAACGCTAATGAGCAGGTACAAGTCTGCTAAGGAAGCACACAGCAGCTCCATAtctgatttatttcagtttttggAGAAGGGTAACTGAAAGGGGTGTTTTTTATtagtgtttatttttatttgatcatTGTTTGTTTCAACCATGGTTATTTTATGCTATAAGCAAGCATGAAACGTTTCTATTCAAACAGTACATTGACTTGTCTGCCCCTCAGTGGTCATGTGTGAGATGTACTCTTAAGAGAATTCTGCTGGTCTACGTGTTGGAATTGTACAGTTTTAAGATGAACATTCTGTGGTGTTTTAAAACGGCTAACTACAATTTCCCTCATTTTGTAAAATCATAATTTATGGTGGATTATAGACCGTTTTAACAGTTGGCAGCTGGCATCAACTGTTTTTTATTTAGACCACATTGAGTACCACAGTATTGAGTCGAATGGTTCGAATTGTTTTTAATGTTTCCATCTGGGATTTTCGAAATACTTAATATAAgttctgtgtttcgtgtaggcttaccccggcgtgacgttttgataactgcacaaatctctctcggacaaggtaaTGTATCAATACTTAGCATTGCGAAAATTGAGGCGAATGTATTGATTAAaactcaccttgtccgagagaatAACACAGCTATCAAAACGGCACGCGAAGGTAAACCTACACCGAACACAAAATGAATTAGAATTTGTCAAATTCACAACGTGAAAAATGAATGGCGGGAAAAACCATTGTAACCATTTTTGTGTTTATGGGTGTTATGACGCTTCTGTGTTGGGACTATTGACAATAGTAGAAGTCGGTGTCCTTTTGTGGCTTCACTTATTTTAATAAATGAACATTTATAGTCA
>XM_021585932.2
CTGAGCCGAAAACAAAGTGTGGGAATACGTCTCCCATTGGCTAAATTACAGTTTGCAATATTGCAACAAGTACGCAAACAAACGTCGTATCGTCATAGCCAATAGAATGTCGAAAGATGGCTGGTGGGCGTGATGGCGTCGGACATTTTGGCCGCGAGGGTCTTGCAAGTTTTTGTGTCTGACTACTCGATTGGAGGTCTTTGTTTTTTATTCTCTCGTTGTCAGTCACGAACATTTGTTATTTACTGGAAATGGAAAAAGAACTGTTTACTAAACTTGCATCTAAAATGGGTATAACCTCTGCAAGAATTCTAAGCCAAGCAGAGGAGTACATGCGGTTATCCCTGGTTAGATGTACAGGACTCAAAAATACTACGGGTACAAGCAAAGCAATAATTTGTCTTGAGCTGGCAGCAAAATCAATGAAGTTACCCCTGGACAAAGAATATACCGTCAAATTATCCGGGTTGAAAAATAAGCAGTATCAAAGCACTCTGAAGGCCATAGAATGCATGCTTGGCCTTGATTCTCACCTGGGACTCCGAGACCTTGCTGTTCAGTTTGGGTGCATGGATGCAGTCAAAGTAGCAACCAAAATACTAGAACGGTATGAAGCAAGCCTTCCTGCTGCTCAGCAGAAAAATGTGGACCTGTCAAAACCACTCTTCACTACAGCTGCTTTGAACGCTGCATGCAAATGCTTGAAGATCAAAGTGGACAGGAAGCTGGTCGCATCATCTGGTGCTAAAAAGGGAATCTTTGACAGGCTGTGCACCCAGCTCCAGAAACTGGGGCAGGACATCTGCGAAGAAGCCACTCCACTGAAGAATCCAGTTAAAATGTCACAGAAAAGAACGAACACACTCATGGAAAGTACTGAACAAAAAGAGGAAGAGGAAGATCTGCCAATGTCTCAAAAGCAGCTGAAAGTGGACTCTGGGGAGAGTGCAACAGAGGATTACGAAGAGTGGAAGCGAAGAATCTTGGAAAATGCCCTTAAAGCCAAACATGCCAATGCATGAAAGTTAATTTGAAATTCATTGCTGTTTATATATTAAGAAAGAGTGTCATGGCTGAGCTGATTGAGGGGAAAGGTTCTCACAAGCTTGGGCATGTGATCAGTGAAAATGCTGTATACAGTGCTGAGTGAGGCTGGAGCTCTCGTTTTCTTTGAATGTGAACGCTAATGAGCAGGTACAAGTCTGCTAAGGAAGCACACAGCAGCTCCATAtctgatttatttcagtttttggAGAAGGGTAACTGAAAGGGGTGTTTTTTATtagtgtttatttttatttgatcatTGTTTGTTTCAACCATGGTTATTTTATGCTATAAGCAAGCATGAAACGTTTCTATTCAAACAGTACATTGACTTGTCTGCCCCTCAGTGGTCATGTGTGAGATGTACTCTTAAGAGAATTCTGCTGGTCTACGTGTTGGAATTGTACAGTTTTAAGATGAACATTCTGTGGTGTTTTAAAACGGCTAACTACAATTTCCCTCATTTTGTAAAATCATAATTTATGGTGGATTATAGACCGTTTTAACAGTTGGCAGCTGGCATCAACTGTTTTTTATTTAGACCACATTGAGTACCACAGTATTGAGTCGAATGGTTCGAATTGTTTTTAATGTTTCCATCTGGGATTTTCGAAATACTTAATATAAgttctgtgtttcgtgtaggcttaccccggcgtgacgttttgataactgcacaaatctctctcggacaaggtaaTGTATCAATACTTAGCATTGCGAAAATTGAGGCGAATGTATTGATTAAaactcaccttgtccgagagaatAACACAGCTATCAAAACGGCACGCGAAGGTAAACCTACACCGAACACAAAATGAATTAGAATTTGTCAAATTCACAACGTGAAAAATGAATGGCGGGAAAAACCATTGTAACCATTTTTGTGTTTATGGGTGTTATGACGCTTCTGTGTTGGGACTATTGACAATAGTAGAAGTCGGTGTCCTTTTGTGGCTTCACTTATTTTAATAAATGAACATTTATAGTCA

Function

symbol description
orc6 Predicted to enable DNA binding activity. Acts upstream of or within cilium assembly. Predicted to be located in nucleus. Predicted to be part of nuclear origin of replication recognition complex. Is expressed in central nervous system; eye; intermediate cell mass of mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6).

NR:

description
origin recognition complex subunit 6-like isoform X1

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005664 nuclear origin of replication recognition complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02608 ORC6; origin recognition complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585931.2 False 2066 mRNA 0.40 7 19888694 19891953
XM_021585934.2 False 2067 mRNA 0.40 7 19888694 19891957
XM_021585932.2 True 2042 mRNA 0.41 8 19888694 19892061

Neighbor

gene id symbol gene type direction distance location
gpt2 gpt2 coding downstream 53554 19823963 ~ 19835140 (-)
cdca9 LOC106562035 coding downstream 67100 19818632 ~ 19821594 (-)
phkb phkb coding downstream 217098 19611688 ~ 19671596 (-)
adamts18 LOC106561991 coding downstream 352409 19483469 ~ 19536285 (-)
LOC110506226 NA coding downstream 546610 19328849 ~ 19342084 (-)
hrh3 LOC106562003 coding upstream 16317 19908378 ~ 19910488 (-)
LOC110506369 LOC106562006 coding upstream 300599 20192660 ~ 20197141 (-)
LOC110506374 LOC106562011 coding upstream 590298 20482359 ~ 20486561 (-)
zgc:162297 LOC106562013 coding upstream 597888 20489949 ~ 20493240 (-)
LOC110506379 LOC106562036 coding upstream 1103198 20995259 ~ 21033710 (-)
G2007768 NA non-coding downstream 328 19887995 ~ 19888366 (-)
G2007770 NA non-coding downstream 5507 19882224 ~ 19883187 (-)
G2007765 LOC106562001 non-coding downstream 11404 19876752 ~ 19877290 (-)
G2007764 LOC106562001 non-coding downstream 12677 19875733 ~ 19876017 (-)
G2007763 NA non-coding downstream 13842 19874536 ~ 19874852 (-)
G2007778 LOC106583515 non-coding upstream 20998 19913059 ~ 19913447 (-)
G2007783 NA non-coding upstream 25256 19917317 ~ 19917522 (-)
G2007786 NA non-coding upstream 28883 19920944 ~ 19921246 (-)
G2007792 shcbp1 non-coding upstream 36471 19928532 ~ 19931387 (-)
G2007793 NA non-coding upstream 40185 19932246 ~ 19937887 (-)
G2005584 NA other downstream 1654158 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 1689105 18194110 ~ 18199589 (-)
G2005166 NA other downstream 1998613 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3165012 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 3929129 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1742218 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 2510957 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 3353723 23245784 ~ 23247139 (-)
G2012712 NA other upstream 4314219 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4604252 24486973 ~ 24599682 (-)

Expression


Co-expression Network