hrh3 (LOC106562003)


Basic Information

Item Value
gene id hrh3
gene name LOC106562003
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 19908378 ~ 19910488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585938.2
ACGCGAACATGTTAGCTTTTACATGCTATTGAAGTTGTCTGGTTAAGctaatataattttaaaaaatggggACCATGCAACCCGAATCTTTATTGATGGGTGCTGGATCTTCCATGGCCGTCACTTCGCATTGGAAATCGAATGAGATGCTCAACTGGTCTGTGGTTACCCAGGGAAACGCCACAGCGCTTGGCGATATGGAGATGCCTGCGAACCCGCGTTCGCATTATGGACAATTCTCTCCGTCTACCTCGGTGTTCTTGGCCGTGCTCATGACGCTTCTGGTCTTCGCCACTGTGCTAGGCAACGCACTTGTAATATTAGCCTTTGTGGTGGAGAAAAGTTTGCGAACTCAAGGGAactttttcttttttaatttgGCCATTGCCGATTTACTCGTTGGAGGCTTTTGCATTCCTGCGTATATCCCCTATGTCATTACCGGCGAGTGGAGACTCGGACGAGGTCTGTGCAAGATATGGCTGGTGGTGGACTATACTTTATGCACGGCATCAGTGTTCAACATCGTCCTGATCAGCTTCGACAGATTTATATCTGTCACCAGCGCGGTGAGCTACAGGTGTCAGAAAGGTTTGACCCGGGAGGCTGTTCTGAAGATGCTGAGTGTTTGGCTGGCTGCTTTCCTACTCTATGGGCCAGCGATCATTATCTGGGAGTACATCGCTGGTAGTAGCGTGGTGCCCGACAAAGAGTGCCACGCAGAGTTTTACTTCAACTGGTATTTCTTGATGACAGCATCCACTGTTGAGTTTTTCACCCCATTTGTTACTGTCATGTACTTCAACATCAGCATCTACATCAACATCAGGAGGCGGAACCAGGTGAGGGATGAGCAGCCTGTCGAGGGGCCTGGGGACAGTGAGATGGAGGCCCTGAAAGCTGGAGTTCAGCATGTATTCTTCGTCAGACCAGTGGAAGGTGAAGCTCCAAGCATCCCAAACAATTCTGCCAGGTTAGGAGGTATTCTATCTACTGCTAAAGTGTCAGCAGTAACTGGGAACAGCAACAATGAGAGAAGTAAGGACCGCAGTATTCTGGACCTTCCTCCACTGCAAGTGGGTGATGTGGTCCAGCATTCCAGGAGGACGCGGTTCCAGGCTACGGAGCACTCGTTCAGTAAACAGCGCAGCCGGTCTGAAGTAGCTGCCAGTCGTTTCCGTCTCTCAAAGGACAAGAAGGTTGCCAAGTCCCTGgcagtgattgtgtgtgtatttggccTGTGCTGGGCTCCCTACACACTTTTAATGATCATCCGCGCCGCGTGTCATGCCCAGTGTGTCCAGCACTACCTGTATGAAATCTCTTTCTGGCTACTGTGGGTCAACTCCTCCATCAACCCTGTCCTTTACCCGCTGTGTCACACTAGCTTCAGAAAGGCTTTCAGAAAACTGCTTTGTACCACCAAGATTAAAATTCAGCCACAGTATATTGAACAAATGTATTAAGCATGACCAATTTGCACTGACAACTATGGCCTCGTTTTGACAGTTTTACACTTGATCAGTTGTCTCATGTCAACGTAGGTGGACAGGTCGTATGAGTGTTGCACAACACTGGGTACAGATGGTCACCATGACTATTGTCTTGTATTTCTGTGTAGTATGTGCGTGTTTGCAGATCTTACGTGTATTAGTTATTTTAGAACACATGTAATGTCTGTTTTACATTGAACAATAAATACATGCAGCCACTCA
>XM_036963417.1
ACGCGAACATGTTAGCTTTTACATGCTATTGAAGTTGTCTGGTTAAGctaatataattttaaaaaatggggACCATGCAACCCGAATCTTTATTGATGGGTGCTGGATCTTCCATGGCCGTCACTTCGCATTGGAAATCGAATGAGATGCTCAACTGGTCTGTGGTTACCCAGGGAAACGCCACAGCGCTTGGCGATATGGAGATGCCTGCGAACCCGCGTTCGCATTATGGACAATTCTCTCCGTCTACCTCGGTGTTCTTGGCCGTGCTCATGACGCTTCTGGTCTTCGCCACTGTGCTAGGCAACGCACTTGTAATATTAGCCTTTGTGGTGGAGAAAAGTTTGCGAACTCAAGGGAactttttcttttttaatttgGCCATTGCCGATTTACTCGTTGGAGGCTTTTGCATTCCTGCGTATATCCCCTATGTCATTACCGGCGAGTGGAGACTCGGACGAGGTCTGTGCAAGATATGGCTGGTGGTGGACTATACTTTATGCACGGCATCAGTGTTCAACATCGTCCTGATCAGCTTCGACAGATTTATATCTGTCACCAGCGCGGTGAGCTACAGGTGTCAGAAAGGTTTGACCCGGGAGGCTGTTCTGAAGATGCTGAGTGTTTGGCTGGCTGCTTTCCTACTCTATGGGCCAGCGATCATTATCTGGGAGTACATCGCTGGTAGTAGCGTGGTGCCCGACAAAGAGTGCCACGCAGAGTTTTACTTCAACTGGAGGCGGAACCAGGTGAGGGATGAGCAGCCTGTCGAGGGGCCTGGGGACAGTGAGATGGAGGCCCTGAAAGCTGGAGTTCAGCATGTATTCTTCGTCAGACCAGTGGAAGGTGAAGCTCCAAGCATCCCAAACAATTCTGCCAGGTTAGGAGGTATTCTATCTACTGCTAAAGTGTCAGCAGTAACTGGGAACAGCAACAATGAGAGAAGTAAGGACCGCAGTATTCTGGACCTTCCTCCACTGCAAGTGGGTGATGTGGTCCAGCATTCCAGGAGGACGCGGTTCCAGGCTACGGAGCACTCGTTCAGTAAACAGCGCAGCCGGTCTGAAGTAGCTGCCAGTCGTTTCCGTCTCTCAAAGGACAAGAAGGTTGCCAAGTCCCTGgcagtgattgtgtgtgtatttggccTGTGCTGGGCTCCCTACACACTTTTAATGATCATCCGCGCCGCGTGTCATGCCCAGTGTGTCCAGCACTACCTGTATGAAATCTCTTTCTGGCTACTGTGGGTCAACTCCTCCATCAACCCTGTCCTTTACCCGCTGTGTCACACTAGCTTCAGAAAGGCTTTCAGAAAACTGCTTTGTACCACCAAGATTAAAATTCAGCCACAGTATATTGAACAAATGTATTAAGCATGACCAATTTGCACTGACAACTATGGCCTCGTTTTGACAGTTTTACACTTGATCAGTTGTCTCATGTCAACGTAGGTGGACAGGTCGTATGAGTGTTGCACAACACTGGGTACAGATGGTCACCATGACTATTGTCTTGTATTTCTGTGTAGTATGTGCGTGTTTGCAGATCTTACGTGTATTAGTTATTTTAGAACACATGTAATGTCTGTTTTACATTGAACAATAAATACATGCAGCCACTCA

Function

NR:

description
histamine H3 receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004969 histamine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585938.2 False 1715 mRNA 0.48 3 19908378 19910488
XM_036963417.1 True 1625 mRNA 0.48 4 19908378 19910488

Neighbor

gene id symbol gene type direction distance location
orc6 orc6 coding downstream 16317 19888694 ~ 19892061 (-)
gpt2 gpt2 coding downstream 73238 19823963 ~ 19835140 (-)
cdca9 LOC106562035 coding downstream 86784 19818632 ~ 19821594 (-)
phkb phkb coding downstream 236782 19611688 ~ 19671596 (-)
adamts18 LOC106561991 coding downstream 372093 19483469 ~ 19536285 (-)
LOC110506369 LOC106562006 coding upstream 282172 20192660 ~ 20197141 (-)
LOC110506374 LOC106562011 coding upstream 571871 20482359 ~ 20486561 (-)
zgc:162297 LOC106562013 coding upstream 579461 20489949 ~ 20493240 (-)
LOC110506379 LOC106562036 coding upstream 1084771 20995259 ~ 21033710 (-)
LOC118944467 NA coding upstream 1291024 21201512 ~ 21203697 (-)
G2007768 NA non-coding downstream 20012 19887995 ~ 19888366 (-)
G2007770 NA non-coding downstream 25191 19882224 ~ 19883187 (-)
G2007765 LOC106562001 non-coding downstream 31088 19876752 ~ 19877290 (-)
G2007764 LOC106562001 non-coding downstream 32361 19875733 ~ 19876017 (-)
G2007763 NA non-coding downstream 33526 19874536 ~ 19874852 (-)
G2007778 LOC106583515 non-coding upstream 2571 19913059 ~ 19913447 (-)
G2007783 NA non-coding upstream 6829 19917317 ~ 19917522 (-)
G2007786 NA non-coding upstream 10456 19920944 ~ 19921246 (-)
G2007792 shcbp1 non-coding upstream 18044 19928532 ~ 19931387 (-)
G2007793 NA non-coding upstream 21758 19932246 ~ 19937887 (-)
G2005584 NA other downstream 1673842 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 1708789 18194110 ~ 18199589 (-)
G2005166 NA other downstream 2018297 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3184696 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 3948813 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1723791 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 2492530 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 3335296 23245784 ~ 23247139 (-)
G2012712 NA other upstream 4295792 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4585825 24486973 ~ 24599682 (-)

Expression


Co-expression Network