LOC110506369 (LOC106562006)


Basic Information

Item Value
gene id LOC110506369
gene name LOC106562006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 20192660 ~ 20197141 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585940.2
TGACGTGTTGCGTAAGCAGACAGCGCTTGCGCCCCTTGCACAATCCAGGCAAGgtcgtagctagctagcattgcaAGGACCTCGCTTAAAAGATGATGTCCCTTGCCGCTCGTTCGGGGGCATTTTCCCCATACTTGCAGGCAACGAACTATGCAGTTGCTGGACCACTCAAAGCACTTATTCCAGGGGTGGTTGTAAAAGGAGAGAAAGTGTTGGTAGACACGAAGAAACCGTTCCTAACCCGCGAGTCCCTGAACGGCCAGAGCCCCAAGACCGGGCCGGCAGTATCAGTTAGCATAAATGCAAAAGCTGCAGTCCGCTTCGCTCACACTGACATCAAGGTGCCAGATTTCTCTGATTACCGTCGGCCTGAGTTGCTTGACCCCAATAAATCTTCTCAGGAGAGCAGCGAGTCCAGGAAAACCTTCTCCTACCTTGTCACCGGGGCCACAGCCGTGGTGGGTGTCTACACAGCCAAGACCGTGGCCACACAGTTTATCTCTTCCATGAGTGCCTCAGCTGATGTCCTGGCCATGTCCAAGATCGAGGTCAAGCTGGGAGAGATCCCAGAGGGCAAGAATATGACCTTCAAGTGGAGGGGCAAGCCTCTGTTCATCCGCCACCGGACTGAGAAAGAGATCGCCACCGAGGAAGCTGTGGAAATGGCTGTGCTTCGTGACCCCCAGCACGACAAGGACCGCGTCGCCAACCCAAAATGGATCATTGTCATCGGCGTGTGCACCCACCTGGGCTGTGTACCCATCGCCAATGCTGGTGACTATGGCGGATACTACTGCCCCTGCCATGGCTCTCACTACGATGCCTCTGGCCGCATCAGGAAAGGCCCAGCCCCACTCAACCTGGAGGTGCCCTACTATGAGTTCCCAGATGAGGACACAGTAATTGTAGGCTAAATTGTTGGACTGAGATCACAGATCAGTATGTTCGGTATGTTTCTGTCTGACTCATTATCCCATCCATTAGCAGGCATAAACTCTGTTTCAGGGTGGTATATTGTAAGtaataaatgtacattttatcTGATTGAAAACCTCATGTTATTTATTTCCCAATCTCAGctacatctaatactgtaccaaaataCGACCTGGGTTGTAAAATGAATGATGGGGTTTATTTCGCCTTAGCGTGGAATAGCATACTAATAGTAGTGATGTTTTAATAGTGCAGGTACAAGAGGATTGACCCAAAAACATACACCTGCTTACAGACAGTTACCTACAATTGTGTCCGAAGGTGATTCTCAAGGGTTAATGTCATGATTGATGCCTTTATGTTCCATTTCAGAGAGCTACAGGAAAGGTTTTGTCTCAGATTTTGTTGGGACGATTTAGAGTGCTTAGGTAAAGTTGTTTAATGGTAATATTGCGAGGGGTTGTATGTTTTCTTCCTATCGATATCCCTGTTTTTGTTTCGGTCGCCGTCACATAGATTAACGTTACACATTCTATGCAAGAAAGAAAAGGGGTCAGCGGGGGCTGACAAAGGCATTAAATCAATGCTAAAGCAACGGAACAGTCACATTTTTCTATTGATGAGCTATCTGCCTACAGAGTTATGTAAAAATGTATACTCATGTTAAGctaataaatgtttcacagaaaATCCTA

Function

NR:

description
cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO: NA

KEGG:

id description
K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585940.2 True 1631 mRNA 0.47 2 20192660 20197141

Neighbor

gene id symbol gene type direction distance location
hrh3 LOC106562003 coding downstream 282172 19908378 ~ 19910488 (-)
orc6 orc6 coding downstream 300599 19888694 ~ 19892061 (-)
gpt2 gpt2 coding downstream 357520 19823963 ~ 19835140 (-)
cdca9 LOC106562035 coding downstream 371066 19818632 ~ 19821594 (-)
phkb phkb coding downstream 521064 19611688 ~ 19671596 (-)
LOC110506374 LOC106562011 coding upstream 285218 20482359 ~ 20486561 (-)
zgc:162297 LOC106562013 coding upstream 292808 20489949 ~ 20493240 (-)
LOC110506379 LOC106562036 coding upstream 798118 20995259 ~ 21033710 (-)
LOC118944467 NA coding upstream 1004371 21201512 ~ 21203697 (-)
si:ch211-186j3.6 LOC106562040 coding upstream 1179294 21376435 ~ 21596616 (-)
G2007835 NA non-coding downstream 203291 19989076 ~ 19989369 (-)
G2007821 NA non-coding downstream 227411 19965033 ~ 19965249 (-)
G2007793 NA non-coding downstream 254773 19932246 ~ 19937887 (-)
G2007792 shcbp1 non-coding downstream 261273 19928532 ~ 19931387 (-)
G2007786 NA non-coding downstream 271414 19920944 ~ 19921246 (-)
G2008237 NA non-coding upstream 10242 20207383 ~ 20207719 (-)
G2008373 NA non-coding upstream 204897 20402038 ~ 20402276 (-)
G2008379 NA non-coding upstream 218229 20415370 ~ 20415609 (-)
G2008385 NA non-coding upstream 224248 20421389 ~ 20421603 (-)
G2008392 NA non-coding upstream 239017 20436158 ~ 20436494 (-)
G2005584 NA other downstream 1958124 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 1993071 18194110 ~ 18199589 (-)
G2005166 NA other downstream 2302579 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3468978 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 4233095 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1437138 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 2205877 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 3048643 23245784 ~ 23247139 (-)
G2012712 NA other upstream 4009139 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4299172 24486973 ~ 24599682 (-)

Expression


Co-expression Network