LOC110506374 (LOC106562011)


Basic Information

Item Value
gene id LOC110506374
gene name LOC106562011
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 20482359 ~ 20486561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585947.2
GTCCCGTCATTCACCGCGGTCATAGTTTTTACCAACACTCATGATACACAAACATTAACACATCATCGAAGTGCGAGATCTGACGGGAGAGCAGCTACCATGGCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCATTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCtcagatcatcatggagctgccTCCCCACCAGCAGCAGAGACTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCCCTGGTCGTGGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCCGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACACCGTAGAACATTTGTACTCAGATTCAACTCAAGCTTATTCCTGGAGACTGAAAGAACCTTTTTATACTGTCGGTTCACTGAAAGAGGCCTTGTGAGAGTTACACTGAGACTCATGTCAGACCTGTCATGTTACCTAATATCTGATCATGTCCATTTAATATCCTTTGATGAAGCGCTGAAATGACATTTACGCCACTTTTTTTAAACGTCATTTTCGTTATCCCCAGCCCGATACCAGTGTCTGCATATGTGAAAACTGCACATTTCTACAAAACAAATATAAAGTTAAAAGTTCTACCCAATGACGCCATCAAaagtaaaacatatttaaaaaccGTGCTTTTCAGGCACTAGGAGATTCCCAGTGATGTGAGGAGCAAGAAAACACCCTCCCTCTGGCTAGAAACTTGTTGAAAACCACTGTTTTGAAAACCACTGTTTTGAAAACCACTgttttgaaaatcactgttttgTTACTTTTAATGCTACCATGTGATGTTACAGAGaagcatttttgtatttttttttgcaccttatctttttaaccacagatcatagaaactTGCTGTTTTCACATACTGTGTGTAGACACTGTTATGGTTTcggagataatgaatatgaggtgGAAGAGTGGCTGAATTGCACTTTAATGTacacatttgttttgttttagttGCGAAATTGTTATCTCTGAATGTCGCGGTATGATTGAAACGTATCTTATACGAACAGTCCAGCAATTAACCAGAAAGGTGTACTTTATTTATATTGTAGTGCATAATTGGTTGCTGAAATTTTGCGTTGAAATGTACACATTGAATATTGTTGGTCATTTATAATTGACATGATTTGCAACAAATGCAAGACAATGAAAAAAGGACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGTGATTCATGCAATGTGAATATTGTAAGAGATGAGTACTTCGGAGAAACCGGCCTTGATACTTCTGGCGCATAAAATGGTGATAAGTGCCACCTAGTCCTAGAATGAACTAATTGGGAAAATCTTGTAGTGCTCTTGTACTAAAGTGTTTGTATGAAAATCATGATAAATGAAATAAAGGACAACGGGGACGTGTATGATCACCACAA
>XM_021585949.2
ATCTCTTCTAGTATTAAATTGGGAGAGCAGCTACCATGGCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCATTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCtcagatcatcatggagctgccTCCCCACCAGCAGCAGAGACTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCCCTGGTCGTGGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCCGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACACCGTAGAACATTTGTACTCAGATTCAACTCAAGCTTATTCCTGGAGACTGAAAGAACCTTTTTATACTGTCGGTTCACTGAAAGAGGCCTTGTGAGAGTTACACTGAGACTCATGTCAGACCTGTCATGTTACCTAATATCTGATCATGTCCATTTAATATCCTTTGATGAAGCGCTGAAATGACATTTACGCCACTTTTTTTAAACGTCATTTTCGTTATCCCCAGCCCGATACCAGTGTCTGCATATGTGAAAACTGCACATTTCTACAAAACAAATATAAAGTTAAAAGTTCTACCCAATGACGCCATCAAaagtaaaacatatttaaaaaccGTGCTTTTCAGGCACTAGGAGATTCCCAGTGATGTGAGGAGCAAGAAAACACCCTCCCTCTGGCTAGAAACTTGTTGAAAACCACTGTTTTGAAAACCACTGTTTTGAAAACCACTgttttgaaaatcactgttttgTTACTTTTAATGCTACCATGTGATGTTACAGAGaagcatttttgtatttttttttgcaccttatctttttaaccacagatcatagaaactTGCTGTTTTCACATACTGTGTGTAGACACTGTTATGGTTTcggagataatgaatatgaggtgGAAGAGTGGCTGAATTGCACTTTAATGTacacatttgttttgttttagttGCGAAATTGTTATCTCTGAATGTCGCGGTATGATTGAAACGTATCTTATACGAACAGTCCAGCAATTAACCAGAAAGGTGTACTTTATTTATATTGTAGTGCATAATTGGTTGCTGAAATTTTGCGTTGAAATGTACACATTGAATATTGTTGGTCATTTATAATTGACATGATTTGCAACAAATGCAAGACAATGAAAAAAGGACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGTGATTCATGCAATGTGAATATTGTAAGAGATGAGTACTTCGGAGAAACCGGCCTTGATACTTCTGGCGCATAAAATGGTGATAAGTGCCACCTAGTCCTAGAATGAACTAATTGGGAAAATCTTGTAGTGCTCTTGTACTAAAGTGTTTGTATGAAAATCATGATAAATGAAATAAAGGACAACGGGGACGTGTATGATCACCA
>XM_021585946.2
GTGATGGGGACAACTATGTCGTTATGTAAAGGGAGAGCAGCTACCATGGCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCATTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCtcagatcatcatggagctgccTCCCCACCAGCAGCAGAGACTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCCCTGGTCGTGGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCCGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACACCGTAGAACATTTGTACTCAGATTCAACTCAAGCTTATTCCTGGAGACTGAAAGAACCTTTTTATACTGTCGGTTCACTGAAAGAGGCCTTGTGAGAGTTACACTGAGACTCATGTCAGACCTGTCATGTTACCTAATATCTGATCATGTCCATTTAATATCCTTTGATGAAGCGCTGAAATGACATTTACGCCACTTTTTTTAAACGTCATTTTCGTTATCCCCAGCCCGATACCAGTGTCTGCATATGTGAAAACTGCACATTTCTACAAAACAAATATAAAGTTAAAAGTTCTACCCAATGACGCCATCAAaagtaaaacatatttaaaaaccGTGCTTTTCAGGCACTAGGAGATTCCCAGTGATGTGAGGAGCAAGAAAACACCCTCCCTCTGGCTAGAAACTTGTTGAAAACCACTGTTTTGAAAACCACTGTTTTGAAAACCACTgttttgaaaatcactgttttgTTACTTTTAATGCTACCATGTGATGTTACAGAGaagcatttttgtatttttttttgcaccttatctttttaaccacagatcatagaaactTGCTGTTTTCACATACTGTGTGTAGACACTGTTATGGTTTcggagataatgaatatgaggtgGAAGAGTGGCTGAATTGCACTTTAATGTacacatttgttttgttttagttGCGAAATTGTTATCTCTGAATGTCGCGGTATGATTGAAACGTATCTTATACGAACAGTCCAGCAATTAACCAGAAAGGTGTACTTTATTTATATTGTAGTGCATAATTGGTTGCTGAAATTTTGCGTTGAAATGTACACATTGAATATTGTTGGTCATTTATAATTGACATGATTTGCAACAAATGCAAGACAATGAAAAAAGGACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGTGATTCATGCAATGTGAATATTGTAAGAGATGAGTACTTCGGAGAAACCGGCCTTGATACTTCTGGCGCATAAAATGGTGATAAGTGCCACCTAGTCCTAGAATGAACTAATTGGGAAAATCTTGTAGTGCTCTTGTACTAAAGTGTTTGTATGAAAATCATGATAAATGAAATAAAGGACAACGGGGACGTGTATGATCACCA
>XM_021585950.2
TTAACAGGATGTGGGCTTGTCCTAAACAAATGTCCCGTCATTCACCGCGGTCATAGTTTTTACCAACACTCATGATACACAAACATTAACACATCATCGAAGTGCGAGATCTGACGCTACCATGGCTCCACGTATGGATGATGTCATGCAACTATGCTGTGACCTGTCTGCAAATCAGCAGATAAAAGCAGCAGTGAAGAATTCTGGGAAAGGATCAGCAGTGGCAGGAGGGACTGCATTTTTAGGAGGTCTTCTAGGTGGTCCCCCAGGGATTGCTGTTGGTGGTGCATTAGGTGGCCTGTTGGGATGGTGGATGACCAGTGGACAGTTCAGACCTCTCCCtcagatcatcatggagctgccTCCCCACCAGCAGCAGAGACTCTATGCTGATATCATGGCCGTTTTGGGCTCACTGGACTGGACAGACCTGGCCCAGCTGACCGCCCTGGTCGTGGGGAATGCTACTCTCCAGCAGCAGGTCACTGCTGCCCTACTCCGTTATATCACAAAGGAACTGAGAGCAGAGGTGAGATATGGGGACTGATCTACACAGACTGAATATCTGGAGGAACACCGTAGAACATTTGTACTCAGATTCAACTCAAGCTTATTCCTGGAGACTGAAAGAACCTTTTTATACTGTCGGTTCACTGAAAGAGGCCTTGTGAGAGTTACACTGAGACTCATGTCAGACCTGTCATGTTACCTAATATCTGATCATGTCCATTTAATATCCTTTGATGAAGCGCTGAAATGACATTTACGCCACTTTTTTTAAACGTCATTTTCGTTATCCCCAGCCCGATACCAGTGTCTGCATATGTGAAAACTGCACATTTCTACAAAACAAATATAAAGTTAAAAGTTCTACCCAATGACGCCATCAAaagtaaaacatatttaaaaaccGTGCTTTTCAGGCACTAGGAGATTCCCAGTGATGTGAGGAGCAAGAAAACACCCTCCCTCTGGCTAGAAACTTGTTGAAAACCACTGTTTTGAAAACCACTGTTTTGAAAACCACTgttttgaaaatcactgttttgTTACTTTTAATGCTACCATGTGATGTTACAGAGaagcatttttgtatttttttttgcaccttatctttttaaccacagatcatagaaactTGCTGTTTTCACATACTGTGTGTAGACACTGTTATGGTTTcggagataatgaatatgaggtgGAAGAGTGGCTGAATTGCACTTTAATGTacacatttgttttgttttagttGCGAAATTGTTATCTCTGAATGTCGCGGTATGATTGAAACGTATCTTATACGAACAGTCCAGCAATTAACCAGAAAGGTGTACTTTATTTATATTGTAGTGCATAATTGGTTGCTGAAATTTTGCGTTGAAATGTACACATTGAATATTGTTGGTCATTTATAATTGACATGATTTGCAACAAATGCAAGACAATGAAAAAAGGACCCTGATCACTCCTCTTGTAAGTGTGCCTGGGATCTCAAGTGATTCATGCAATGTGAATATTGTAAGAGATGAGTACTTCGGAGAAACCGGCCTTGATACTTCTGGCGCATAAAATGGTGATAAGTGCCACCTAGTCCTAGAATGAACTAATTGGGAAAATCTTGTAGTGCTCTTGTACTAAAGTGTTTGTATGAAAATCATGATAAATGAAATAAAGGACAACGGGGACGTGTATGATCACCA

Function

NR:

description
protein C19orf12 homolog

GO: NA

KEGG:

id description
K23168 MPAN; protein MPAN

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585947.2 False 1681 mRNA 0.42 3 20482359 20486530
XM_021585949.2 False 1614 mRNA 0.41 3 20482362 20485874
XM_021585946.2 False 1624 mRNA 0.42 3 20482362 20486377
XM_021585950.2 True 1700 mRNA 0.42 3 20482362 20486561

Neighbor

gene id symbol gene type direction distance location
LOC110506369 LOC106562006 coding downstream 285218 20192660 ~ 20197141 (-)
hrh3 LOC106562003 coding downstream 571871 19908378 ~ 19910488 (-)
orc6 orc6 coding downstream 590298 19888694 ~ 19892061 (-)
gpt2 gpt2 coding downstream 647219 19823963 ~ 19835140 (-)
cdca9 LOC106562035 coding downstream 660765 19818632 ~ 19821594 (-)
zgc:162297 LOC106562013 coding upstream 3388 20489949 ~ 20493240 (-)
LOC110506379 LOC106562036 coding upstream 508698 20995259 ~ 21033710 (-)
LOC118944467 NA coding upstream 714951 21201512 ~ 21203697 (-)
si:ch211-186j3.6 LOC106562040 coding upstream 889874 21376435 ~ 21596616 (-)
LOC118944445 NA coding upstream 1197825 21684386 ~ 21686159 (-)
G2008417 NA non-coding downstream 6489 20475604 ~ 20475870 (-)
G2008409 NA non-coding downstream 19845 20462115 ~ 20462514 (-)
G2008398 NA non-coding downstream 36810 20445307 ~ 20445549 (-)
G2008397 NA non-coding downstream 39262 20442797 ~ 20443097 (-)
G2008392 NA non-coding downstream 45865 20436158 ~ 20436494 (-)
G2008465 NA non-coding upstream 16166 20502727 ~ 20502969 (-)
G2008481 NA non-coding upstream 40529 20527090 ~ 20527852 (-)
G2008482 NA non-coding upstream 41401 20527962 ~ 20528172 (-)
G2008490 NA non-coding upstream 63846 20550407 ~ 20550652 (-)
G2008498 NA non-coding upstream 69630 20556191 ~ 20556469 (-)
G2005584 NA other downstream 2247823 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 2282770 18194110 ~ 18199589 (-)
G2005166 NA other downstream 2592278 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3758677 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 4522794 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1147718 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 1916457 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 2759223 23245784 ~ 23247139 (-)
G2012712 NA other upstream 3719719 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 4009752 24486973 ~ 24599682 (-)

Expression


Co-expression Network