LOC118944445


Basic Information

Item Value
gene id LOC118944445
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 21684386 ~ 21686159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039786.1
CGACAACAGGCTTTTTGCCAGACTTCAAACTTACGTCTAGCCTACTACTTCAAGATCACAACTTGAGGAACTTAGAACAATTCAGAGTTGTGAAATCAATGCTGCATTGTGTCATGCATATCAGTAATACAGCCCACACCCTGCAAGTTGACGTCTTTCATAACCAAACCTGATCAAGCGAGACACTTTGTTTACTTTAAGTCTTCTGTGGTCTCATTCATTTCAAAAAGTATTAGATTTCTACTTGAACTTTGTCGTAAGATTTGACGGTGTGCTTACATTCGATGCATAAACTACCTTGCTTACGCAGGTTCTAATAAGCCATTTATCATTTACGCACCTGTGATCTATAAATCTCAAATTGACTTAGAATTGATGGCACCTGAACGTGCCTTACAATCAGCGATTTCCCCTAAAAGAATGCTAGCACAAATTAGTCTTTAGTCAGGAATAgccgctgcagtgaacgaggtggggCAGCAAGACAGAACTGTGGCTGATGTGAAAGAAATGGTCTGACCTTAAACTGCAAGGGGGGAAACATAGCCATACATAACCGCAGCATTAAGGCAACGGGAGGGGGGCCTGGCACGCCGGAGCTCTCCCAAATGGACCAGTGCATCGGGGCAATCAGTGGTTAAAGCGCATACACTGGCACATACCCCGATGGCGacagtaaatgtttttttttttttaaggtgttTCTTCTATTTGAGCTCTTCTGCTTTATTTTTCATATGGTTTAATCCCAATTTTTACATCGGAAACGGTGAAGTCGGCACGCGAATCCCCTAGGACTGCATCTGTAAAGTCTGCTTCCAACTCTCAAACATGTAGATCCCcagaacgcagctcactttccagatcacctgaattctgatcacctgttcacacacctgtatgtcattatcacacactatttagttcagttctttgcaccccatcattgtgcgGTATTATTTGTTTTGTGACACTTCTATTCGGAGCTCTGTTTTCCCCGGTAATCTAAAGCCTCCCGAGTATGATAGTGAAGCAGGCAAAAACTAGCGACGCATTTTGCCTAGTCCCTGCCTGTACTTTCGGATATACTGTTATCAGCCTGTTGCCTGATCTCCCAGACGATGTTACTAGCCTTTTCTCTGCTTGTACTGtttgttgcctttttggaccccctgtgtatggccttctgcctgcccctagacccagctacctgcctcctcctgtggtcctttacaaaaacacctgctgcgccctgcgcttgaaaccagctgtctcccatcgtgttcattacagcATCACTGGATAACGAAATGGAGGAAGCTGTGTTGCAGCCTGTGCGTCGGTTGAGGGTGGCCCCTCCACCAAGGGAGAAAGTGTGTGAGGCTCCCAAATCAGCAGGTGCTAAATGTTTGGCCACAGGTGTGGAGGGTCTGTGTGCCGGTTCCCAATCCGCGAGGCCCAGGTTCCCAAGCATCGCAGATGCCATGAGTGAGGGAATGTTTGGCCTACAGGGGTTGAGGGTCTGTCCACGTCTACAGTTTGTGTGTTGACCACCTCAGTCCTGCAAACCCAGAGTGTTGGACGCATTGGTTGGGCAGATTGTGACTGAAGTTGGAAGAATACACAGGGTTTTACTTCATTTACATAATGCAATTGATGAATGTTTTCCACTacgttaataaaaaaaaaactatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039786.1 True 1695 mRNA 0.46 2 21684386 21686159

Neighbor

gene id symbol gene type direction distance location
si:ch211-186j3.6 LOC106562040 coding downstream 87770 21376435 ~ 21596616 (-)
LOC118944467 NA coding downstream 480689 21201512 ~ 21203697 (-)
LOC110506379 LOC106562036 coding downstream 650676 20995259 ~ 21033710 (-)
zgc:162297 LOC106562013 coding downstream 1191146 20489949 ~ 20493240 (-)
LOC110506374 LOC106562011 coding downstream 1197825 20482359 ~ 20486561 (-)
mtss1lb LOC106587150 coding upstream 5289 21691448 ~ 21759635 (-)
LOC110506388 LOC106587148 coding upstream 161871 21848030 ~ 21910477 (-)
LOC110506389 LOC106562045 coding upstream 269217 21955376 ~ 22031243 (-)
slc7a6os s7a6o coding upstream 415907 22102066 ~ 22105359 (-)
LOC110506394 LOC106562050 coding upstream 421115 22107274 ~ 22111846 (-)
G2009958 NA non-coding downstream 281 21683577 ~ 21684105 (-)
G2010010 NA non-coding downstream 23650 21660514 ~ 21660736 (-)
G2009989 NA non-coding downstream 51153 21633008 ~ 21633233 (-)
G2009977 NA non-coding downstream 69520 21614659 ~ 21614866 (-)
G2009975 NA non-coding downstream 70963 21612999 ~ 21613423 (-)
G2009953 NA non-coding upstream 1496 21687655 ~ 21688681 (-)
G2010078 NA non-coding upstream 82030 21768189 ~ 21768417 (-)
G2010079 NA non-coding upstream 82746 21768905 ~ 21769127 (-)
G2010080 NA non-coding upstream 85357 21771516 ~ 21771856 (-)
G2010081 NA non-coding upstream 87326 21773485 ~ 21813315 (-)
G2009991 NA other downstream 49794 21634279 ~ 21634592 (-)
G2005584 NA other downstream 3449850 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 3484797 18194110 ~ 18199589 (-)
G2005166 NA other downstream 3794305 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 4960704 16720991 ~ 16723682 (-)
lto1 oraov1 other upstream 716859 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 1559625 23245784 ~ 23247139 (-)
G2012712 NA other upstream 2520121 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 2810154 24486973 ~ 24599682 (-)
G2013483 NA other upstream 3164111 24850270 ~ 24850636 (-)

Expression


Co-expression Network