lto1 (oraov1)


Basic Information

Item Value
gene id lto1
gene name oraov1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 22402983 ~ 22405876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585991.2
GCTGAACGTTCCTGTCGGCGAACGTAGCCCTATCACAGGCCcctgagcctgtgtagggatgTATTTTGTAGTGGACTGTGATTGAAGAAGTATGATGGTTTTGTATTTTAGATATTTTGTATGATATTGTTTTACCCCTTTTCCGGAATATATTTTTTTCGTTTTTTATTTAATACCCCGTCCAGCTGGTAACGGTAATGCACCATTaacattggatgccaaccgccgttatACCTAATCGAAGGAGAACAAACTCCAACACAGTAGATGGCAGTGATGCGCGAACTAACCGTTGGGCTTTCCAAAGCAATGCTGTAGCCACAAACTGATGTTTGCGGAAGCGAGAGCTGTTGGCTAGGCTATATAGCCAAGTAATATTTGTAATAGGCGACACTCTTTTAATAATCTTCGAAAATGGCCCACAAAAGTGAAGATTTATTTGACTGTATTCTCATGGCGGACGACAGGTTCCATGTAGAGGGGTACCGTGAGGGGTTCGGTGAAGGCACGCGACAAGGAATGATTGATGGTCGGAAACATGGGGCATCACATGGTGCCAAGCTTTCAATGGAGGTTTCCTTCTATTATGGATTTGGAATCACTTGGAAATGCCTTCTTCAAAACAACACAGATGTGAAAGCCAGAAAAAGGCTGAAAGTTTTGGAATCTCTACTTGGGTTGATTCAGAAGTTCCCCCATGAAGAACctcaatatgaacatctccagGAAGACATGGAGAAGGTTCGGGCCAAGTTTAGACAGGTCTGCTCTCTGTTAAATGTGCCAACAGACTTCAGTGATTATGTGAAGTCTGGAGGTTCTGGAGGAATATCCTTCTGAAGGGAACTGGCAACTCTAAAGCCCACGGCTTGAGGATCTGAAGGGGGTTCCTTGAATGCAACCTTTCCTGTGAAGCATTGTGGCTTTGAAGACAAGATAGGAGAACAGTTGAGGAGGAGGAACCTGCAGGTGGCCCTGCCCTTATGTAAACAGGAGGTCCTGAATTGGTCTGTAGTGTAGTTAACTGACTTTTAATGGTGGAGCATAAAGTATGCTATCAGTTGGTATTATGAAGAATTGGTGTTTTCGAATGACAAAGGTTAGGATATCAATTGGTGGGGCATCAGTCTAGTTTTGAAATATGGAGTGCTACTGAGAACACAAAGTGAACAGGAAGTGCTACATAGGCCTAACTGGTGTTCTATAGTCCTTGATGTTTACTGCTTTGTCTGGGTGGTAAGAGAGAGCTGAGTTGCATCATATTATTTTGTAATTCTAATGATTCTAGATAAATGagtgattttcttttttttttatctacactttgaagaagaaaaagaaggttCCAAATGGAACCAATAAGGATTCTATCGCTTGCTTTATATATATGCCCCTAaatgttctatacagaaccccaATGAACAGTTTTTCTAATAGTGTAGGTCAATTTTGAGTGACCTGGTTGAGAATGAGTGATTGCTTAAACTACTGGTTGAtgtgaaataataataaaaagctATTTATTTCAAGTA
>XM_021585992.2
GGCCATAAACTGTACAGCACAAGCGGGGAAGAAAATTGTAATCATTGTGAATTCCGCTGAACGTTCCTGTCGGCGAACGTAGCCCTATCACAGGCCcctgagcctgtgtagggatgTATTTTGTAGTGGACTGTGATTGAAGAAGTATGATGGTTTTGTATTTTAGATATTTTGTATGATATTGTTTTACCCCTTTTCCGGAATATATTTTTTTCGTTTTTTATTTAATACCCCGTCCAGCTGGTAACGGTAATGCACCATTaacattggatgccaaccgccgttatACCTAATCGAAGGAGAACAAACTCCAACACAGTAGATGGCAGTGATGCGCGAACTAACCGTTGGGCTTTCCAAAGCAATGCTGTAGCCACAAACTGATGTTTGCGGAAGCGAGAGCTGTTGGCTAGGCTATATAGCCAAGTAATATTTGTAATAGGCGACACTCTTTTAATAATCTTCGAAAATGGCCCACAAAAGTGAAGATTTATTTGACTGTATTCTCATGGCGGACGACAGGTTCCATGTAGAGGGGTACCGTGAGGGGTTCGGTGAAGGCACGCGACAAGGAATGATTGATGGTCGGAAACATGGGGCATCACATGGTGCCAAGCTTTCAATGGAGGTTTCCTTCTATTATGGATTTGGAATCACTTGGAAATGCCTTCTTCAAAACAACACAGATGTGAAAGCCAGAAAAAGGCTGAAAGTTTTGGAATCTCTACTTGGGTTGATTCAGAAGTTCCCCCATGAAGAACctcaatatgaacatctccagGAAGACATGGAGAAGGTTCGGGCCAAGTTTAGACAGACTTCAGTGATTATGTGAAGTCTGGAGGTTCTGGAGGAATATCCTTCTGAAGGGAACTGGCAACTCTAAAGCCCACGGCTTGAGGATCTGAAGGGGGTTCCTTGAATGCAACCTTTCCTGTGAAGCATTGTGGCTTTGAAGACAAGATAGGAGAACAGTTGAGGAGGAGGAACCTGCAGGTGGCCCTGCCCTTATGTAAACAGGAGGTCCTGAATTGGTCTGTAGTGTAGTTAACTGACTTTTAATGGTGGAGCATAAAGTATGCTATCAGTTGGTATTATGAAGAATTGGTGTTTTCGAATGACAAAGGTTAGGATATCAATTGGTGGGGCATCAGTCTAGTTTTGAAATATGGAGTGCTACTGAGAACACAAAGTGAACAGGAAGTGCTACATAGGCCTAACTGGTGTTCTATAGTCCTTGATGTTTACTGCTTTGTCTGGGTGGTAAGAGAGAGCTGAGTTGCATCATATTATTTTGTAATTCTAATGATTCTAGATAAATGagtgattttcttttttttttatctacactttgaagaagaaaaagaaggttCCAAATGGAACCAATAAGGATTCTATCGCTTGCTTTATATATATGCCCCTAaatgttctatacagaaccccaATGAACAGTTTTTCTAATAGTGTAGGTCAATTTTGAGTGACCTGGTTGAGAATGAGTGATTGCTTAAACTACTGGTTGAtgtgaaataataataaaaagctATTTATTTCAAGTA
>TU2300664
GCGGAAGCGAGAGCTGTTGGCTAGGCTATATAGCCAAGTAATATTTGTAATAGGCGACACTCTTTTAATAATCTTCGAAAATGGCCCACAAAAGTGAAGATTTATTTGACTGTATTCTCATGGCGGACGACAGGTTCCATGTAGAGGGGTACCGTGAGGGGTTCGGTGAAGGCACGCGACAAGGAATGATTGATGGTCGGAAACATGGGGCATCACATGGTGCCAAGCTTTCAATGGAGGTTTCCTTCTATTATGGATTTGGAATCACTTGGAAATGCCTTCTTCAAAACAACACAGATGTGAAAGCCAGAAAAAGGCTGAAAGTTTTGGAATCTCTACTTGGGTTGATTCAGAAGTTCCCCCATGAAGAACctcaatatgaacatctccagGAAGACATGGAGAAGGTTCGGGCCAAGTTTAGACAGACTTCAGTGATTATGTGAAGTCTGGAGGTTCTGGAGGAATATCCTTCTGAAGGGAACTGGCAACTCTAAAGCCCACGGCTTGAGGATCTGAAGGGGGTTCCTTGAATGCAACCTTTCCTGTGAAGCATTGTGGCTTTGAAGACAAGATAGGAGAACAGTTGAGGAGGAGGAACCTGCAGGTGGCCCTGCCCTTATGTAAACAGGAGGTCCTGAATTGGTCTGTAGTGTAGTTAACTGACTTTTAATGGTGGAGCATAAAGTATGCTATCAGTTGGTATTATGAAGAATTGGTGTTTTCGAATGACAAAGGTTAGGATATCAATTGGTGGGGCATCAGTCTAGTTTTGAAATATGGAGTGCTACTGAGAACACAAAGTGAACAGGAAGTGCTACATAGGCCTAACTGGTGTTCTATAGTCCTTGATGTTTACTGCTTTGTCTGGGTGGTAAGAGAGAGCTGAGTTGCATCATATTATTTTGTAATTCTAATGATTCTAGATAAATGagtgattttcttttttttttatctacactttgaagaagaaaaagaaggttCCAAATGGAACCAATAAGGATTCTATCGCTTGCTTTATATATATGCCCCTAaatgttctatacagaaccccaATGAACAGTTTTTCTAATAGTGTAGGTCAATTTTGAGTGACCTGGTTGAGAATGAGTGATTGCTTAAACTACTGGTTGAt

Function

NR:

description
oral cancer-overexpressed protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585991.2 False 1532 mRNA 0.41 5 22402983 22405821
XM_021585992.2 False 1559 mRNA 0.41 5 22402983 22405876
TU2300664 True 1135 TUCP 0.41 5 22403018 22405487
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Neighbor

gene id symbol gene type direction distance location
LOC110506398 dhcr7 coding downstream 195438 22199185 ~ 22207545 (-)
LOC110506227 LOC106587141 coding downstream 270432 22124626 ~ 22132551 (-)
LOC110506396 LOC106587142 coding downstream 280803 22113863 ~ 22122180 (-)
LOC110506394 LOC106562050 coding downstream 291137 22107274 ~ 22111846 (-)
slc7a6os s7a6o coding downstream 297624 22102066 ~ 22105359 (-)
trnaf-gaa-148 NA coding upstream 5377 22411253 ~ 22411325 (-)
ciao2b fa96b coding upstream 6476 22412352 ~ 22415559 (-)
LOC110506409 LOC106562062 coding upstream 48615 22454491 ~ 22472492 (-)
LOC110506407 LOC106562059 coding upstream 77560 22483436 ~ 22563180 (-)
aprt LOC106562063 coding upstream 163198 22569074 ~ 22571989 (-)
G2011060 LOC106562051 non-coding downstream 243988 22153405 ~ 22158995 (-)
G2010976 NA non-coding downstream 393355 22009414 ~ 22009628 (-)
G2010973 NA non-coding downstream 395399 22007377 ~ 22007584 (-)
G2010960 NA non-coding downstream 409421 21993151 ~ 21993562 (-)
G2011232 LOC106587268 non-coding upstream 30170 22436046 ~ 22436537 (-)
G2011236 NA non-coding upstream 35973 22441849 ~ 22442140 (-)
LOC110506416 galns non-coding upstream 189195 22572417 ~ 22599308 (-)
LOC110506413 LOC106562167 non-coding upstream 199718 22605594 ~ 22663238 (-)
G2011333 NA non-coding upstream 214874 22620750 ~ 22620969 (-)
G2009991 NA other downstream 768391 21634279 ~ 21634592 (-)
G2005584 NA other downstream 4168447 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 4203394 18194110 ~ 18199589 (-)
G2005166 NA other downstream 4512902 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 5679301 16720991 ~ 16723682 (-)
G2011712 LOC106587247 other upstream 839908 23245784 ~ 23247139 (-)
G2012712 NA other upstream 1800404 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 2090437 24486973 ~ 24599682 (-)
G2013483 NA other upstream 2444394 24850270 ~ 24850636 (-)
LOC110506491 LOC106562111 other upstream 3269811 25675687 ~ 25681379 (-)

Expression

lto1(oraov1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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lto1(oraov1) Expression in each Bioproject

Bar chart with 21 bars.
lto1(oraov1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network