Item | Value |
---|---|
gene id | LOC110506433 |
gene name | LOC106587247 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048590.1 |
NCBI id | CM023244.2 |
chromosome length | 51113553 |
location | 23180806 ~ 23266802 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
amyloid beta A4 precursor protein-binding family A member 2-like isoform X1 |
id | description |
---|---|
K20055 | APBA2, X11L; amyloid beta A4 precursor protein-binding family A member 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021586033.2 | False | 3470 | mRNA | 0.55 | 14 | 23180806 | 23266802 |
XM_021586036.2 | False | 3434 | mRNA | 0.55 | 13 | 23180806 | 23266802 |
XM_021586034.2 | False | 3449 | mRNA | 0.55 | 14 | 23180835 | 23266802 |
XM_036964550.1 | True | 3417 | mRNA | 0.55 | 13 | 23241016 | 23266802 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110506431 | LOC106562156 | coding | upstream | 3597 | 23175882 ~ 23177209 (+) |
pkd1l3 | LOC106587158 | coding | upstream | 26900 | 23147547 ~ 23153906 (+) |
LOC118944393 | LOC106562175 | coding | upstream | 33902 | 23143221 ~ 23146904 (+) |
LOC110506426 | LOC106562187 | coding | upstream | 64839 | 23104352 ~ 23115967 (+) |
sult5a1 | LOC106562189 | coding | upstream | 126095 | 23052241 ~ 23054711 (+) |
LOC110506436 | NA | coding | downstream | 2136 | 23268093 ~ 23271945 (+) |
LOC110506437 | LOC106562151 | coding | downstream | 53279 | 23320081 ~ 23473212 (+) |
LOC110506438 | LOC106587243 | coding | downstream | 207404 | 23474206 ~ 23648203 (+) |
LOC110506439 | casc4 | coding | downstream | 382268 | 23649070 ~ 23680333 (+) |
LOC110506441 | LOC106562148 | coding | downstream | 414082 | 23680884 ~ 23706352 (+) |
G2010843 | NA | non-coding | upstream | 41750 | 23138394 ~ 23139056 (+) |
G2010838 | NA | non-coding | upstream | 54347 | 23126233 ~ 23126459 (+) |
G2010835 | NA | non-coding | upstream | 58085 | 23122494 ~ 23122721 (+) |
G2010810 | NA | non-coding | upstream | 96082 | 23081796 ~ 23084724 (+) |
G2011735 | NA | non-coding | downstream | 31720 | 23298522 ~ 23304215 (+) |
G2011798 | NA | non-coding | downstream | 155366 | 23422168 ~ 23422430 (+) |
G2011729 | NA | non-coding | downstream | 162710 | 23429512 ~ 23430382 (+) |
G2011804 | NA | non-coding | downstream | 180861 | 23447663 ~ 23448402 (+) |
G2010795 | NA | other | upstream | 119130 | 23061179 ~ 23061676 (+) |
G2010496 | NA | other | upstream | 737370 | 22443118 ~ 22443436 (+) |
G2010267 | NA | other | upstream | 1113565 | 22058096 ~ 22067241 (+) |
G2009770 | NA | other | upstream | 1341565 | 21838703 ~ 21839241 (+) |
G2009769 | NA | other | upstream | 1342648 | 21837723 ~ 21838158 (+) |
G2011803 | NA | other | downstream | 180459 | 23447261 ~ 23512801 (+) |
G2012007 | NA | other | downstream | 616400 | 23883202 ~ 23886340 (+) |
LOC110506448 | NA | other | downstream | 764172 | 24030968 ~ 24037129 (+) |
G2012820 | NA | other | downstream | 1063573 | 24330375 ~ 24330718 (+) |
LOC110506460 | LOC106562133 | other | downstream | 1450932 | 24717649 ~ 24729611 (+) |