LOC110506438 (LOC106587243)


Basic Information

Item Value
gene id LOC110506438
gene name LOC106587243
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 23474206 ~ 23648203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963964.1
CGACCAAAGAACAGCGTGTAGCTAGCTGCATCTCCTCCCGCCGCGGGTAGTTTGCTGTCGTCTGTGAAAACCCTGCGCCTGTGTGAAATAGCATACCCACGGCCACGCTCTCTCTGCATGTAACCTGCTGCGCGTTTGACAGTGGAATACTAGCCTACATAAAAGGGTGACATTATTCCCGTTTCATTTCAGCTATACGTTTTTACTTGCCGATGTTCTTTAAAATGTATCCTGTAGCAATGAAAATAAGGAAGTATAATGAATCCTCGTGGACTATGATTTGATGGACCATTTCTCAAGCTTTTCCTCGAAAACCCGGTTACCTTACCTAATAGCTCGTTATCCTGTGTTTTTGCGGAATCGATTTGGGTAGCAGCACAAGAAAGTCACTACGCATCTCATCCATCACACTGTTGTAGCCTTCAGAATAACAGGCATTTACACATCTGCATCTTGGGATAATTAATGCAATTTAATGGAGTCTCTTTCAAAGGAACCATTTAGTAGGACTGGTGTTATATGCTTTTTGGACACCGTTGCTTATCAAGCTTAACGTTTGGACATCGGTTACTTGCTTTGCTGTTAGGTACCACTTTTGGATGCTGATGGAAATAGCTTAACCCTATTTTTTCGATAGCTGATACATCAACTGTTTTCTTCGTGATAATGCCAGTCCAAGCAATGCCCCGAGGTCGTTCGCTCAGCCCCGCGTCCCTGTCCCGTAGCCTCTCCAGACTCAGGGAGTTTCGGACTCGGACTCGGATCATGCTTTCTCTCGGAGTTTCTCAGATGGTTTTGGGAAGTCTGATTTTGGCAGTCAGTTTTGCCGCTCTGGCCCTCACTACCTCACCAAGGGTCAGACATTCGTGTCCATTTTGGGCAGGTTTCTCTGTGCTGCTGTCTGGACTGATAGGAGTGGTGTCATGGAAGAGGCCTCTCTCTCTGGTGATCACCTTCTTCATGCTGCTGTCGGCGGTATGTGTGATGCTCAACCTGGCTGGCTCCATCCTGTCCTGCCAGAACGCTCAGTTGGTCAACTCCCTGGAGGACTGTCAGCTGATAAAGTTTGAcagtgacggtgtgtgtgtgtgctgtgaacTGCAGCACCAGAGCTCCAGCTGCAACAACCTCGGAGAGACGCTCAAACTGAACCCACTGAGCGACTGCGACACCATACGCCAACACCTCAAGGAGCTCCTGTTTAGTGTGTGCGCCCTGAATGTCATCTCCACCATCGTCTGTGCCCTGGCCACTGCCATGTGCTGCATGCAGATGGTCTCCACTGATGTGCTACAGATCtTCATGCCACACAGAGCACGAGCCCTGAGCGCTGACTGCATGACCCCCCACGGCACCATCCTGCACCAGAACCTTGACTTTGACGAGTTCAtcccacccatccctccaccaccctactacccCCCAGAGTACACCTGCACCCCGGTGATGGACGGGCAGAGAAGTCTACATCTGGACTTTCCACACTCCCCTTTCAGTGCCATCTATGGAGTACCCATCAACAGCCCTGGGACACTCTACCCCTCTGAGTTGCCCCCGTCATACGAGTCTGTggtggggatggggatggggcagACCCCTGCCAGTCAGGTCACTACCAGCATTGATCAGCAGGCCACTGAGTCCAGCCTCTGTGAGAGAAACACCACAGCTGGTCTCAGTACTCAGGCCTCGGTGGACAGTGCCTCTCTAATGGTATCAGAGGAGGTGGCAGAAATTCCAGACCACAGTTGCTCCTCAGAGGATCTCTGTTCCCTGGAGGTGCAGGGCTCTGACTCCTCTCCCTATGGCACGCTGCACACCGCCCCCACTGATGGCAGCTGTATCAGTCTAGAGCTCAGTGCCCGCTTCTCCCACCACCACCGCGGCCCGGCCCGGCTCGACGACACTGGCTACAGCGAGTCCTCCCACACCCAGGACTCCATACCCCACTCTCCAGACTGGTCCATAGAGAACAGCAACATACTGGAGCACGAGGAGCCCAAGGGAGGAGTAAAGCTACACGCAAACCTCAGAGAACGAGCCAGTAGGAAGCAGCTGATTCTTCCTGTCCCTcctactcctccctccctgccctctgcctccccctctgcaGCCACAGCCTCCGTAGAGGCAGCCTCAGCAGCCCAGAGCCTCCCTGCCTGCCCCTCCCCGTCCACCCCTGCCCGGCCCCGTGGCTCCCGGCTGTGCTTCAGTGTGTGgtccccatcctcctcttcctccccggCCTCGCAGCCCCCTTCTACCTCAGCGCCCGCAGAGCGACCCCGCATGCTCCGGTCTGGCAGGAGGTATCGCAAGCTGGCTCGCATCGTACGCTCCACCAGCGACCCCATCTCCTGTACCTCCATAACTGGAAGTGACAGCTGTGGCAGCCCCTCTGCAAGCGACCCTCCTCCTGAAGATTCTCCTCAGACTTCACCAGAGCAAGAGTCCACAGAGGTGGCAGCTCCTCCCCACGCCGCTGCCAAAGTCAGCACCCGCAGTGGTAGAAAGCAGAAGGAGGGGAGGAAAGTGGACATCCGCCTCAAACCGCGAGCCCTGCACACGGTCTCCAACGAGCGTCCACACTCTCTGGCTGACCTCAAGACGTATAAAGACACCAAAATCCTGGTGGCCAAATTCCTGGAGCACTCCAGCTGCAGTCTACCTCCAGAGGTCCAGCAGGTGGTCAACAGCATCAAGTGATGACACAATCACAACGCATCATCGGCAGCCCAAGGAAGCGTGCCCATGAAGACTTGCACCTACAAAGCTGTGGGGCCTTGAGTTCCCCTTCCTCATCCCTGCGCCGTCCACCTACAGCACCAGGGCCTCCC
>XM_021586042.2
AGAACAGCGTGTAGCTAGCTGCATCTCCTCCCGCCGCGGGTAGTTTGCTGTCGTCTGTGAAAACCCTGCGCCTGTGTGAAATAGCATACCCACGGCCACGCTCTCTCTGCATGTAACCTGCTGCGCGTTTGACAGTGGAATACTAGCCTACATAAAAGGGTGACATTATTCCCGTTTCATTTCAGCTATACGTTTTTACTTGCCGATGTTCTTTAAAATGTATCCTGTAGCAATGAAAATAAGGAAGTATAATGAATCCTCGTGGACTATGATTTGATGGACCATTTCTCAAGCTTTTCCTCGAAAACCCGGTTACCTTACCTAATAGCTCGTTATCCTGTGTTTTTGCGGAATCGATTTGGGTAGCAGCACAAGAAAGTCACTACGCATCTCATCCATCACACTGTTGTAGCCTTCAGAATAACAGGCATTTACACATCTGCATCTTGGGATAATTAATGCAATTTAATGGAGTCTCTTTCAAAGGAACCATTTAGTAGGACTGGTGTTATATGCTTTTTGGACACCGTTGCTTATCAAGCTTAACGTTTGGACATCGGTTACTTGCTTTGCTGTTAGGTACCACTTTTGGATGCTGATGGAAATAGCTTAACCCTATTTTTTCGATAGCTGATACATCAACTGTTTTCTTCGTGATAATGCCAGTCCAAGCAATGCCCCGAGGTCGTTCGCTCAGCCCCGCGTCCCTGTCCCGTAGCCTCTCCAGACTCAGGGAGTTTCGGACTCGGACTCGGATCATGCTTTCTCTCGGAGTTTCTCAGATGGTTTTGGGAAGTCTGATTTTGGCAGTCAGTTTTGCCGCTCTGGCCCTCACTACCTCACCAAGGGTCAGACATTCGTGTCCATTTTGGGCAGGTTTCTCTGTGCTGCTGTCTGGACTGATAGGAGTGGTGTCATGGAAGAGGCCTCTCTCTCTGGTGATCACCTTCTTCATGCTGCTGTCGGCGGTATGTGTGATGCTCAACCTGGCTGGCTCCATCCTGTCCTGCCAGAACGCTCAGTTGGTCAACTCCCTGGAGGACTGTCAGCTGATAAAGTTTGAcagtgacggtgtgtgtgtgtgctgtgaacTGCAGCACCAGAGCTCCAGCTGCAACAACCTCGGAGAGACGCTCAAACTGAACCCACTGAGCGACTGCGACACCATACGCCAACACCTCAAGtTCATGCCACACAGAGCACGAGCCCTGAGCGCTGACTGCATGACCCCCCACGGCACCATCCTGCACCAGAACCTTGACTTTGACGAGTTCAtcccacccatccctccaccaccctactacccCCCAGAGTACACCTGCACCCCGGTGATGGACGGGCAGAGAAGTCTACATCTGGACTTTCCACACTCCCCTTTCAGTGCCATCTATGGAGTACCCATCAACAGCCCTGGGACACTCTACCCCTCTGAGTTGCCCCCGTCATACGAGTCTGTggtggggatggggatggggcagACCCCTGCCAGTCAGGTCACTACCAGCATTGATCAGCAGGCCACTGAGTCCAGCCTCTGTGAGAGAAACACCACAGCTGGTCTCAGTACTCAGGCCTCGGTGGACAGTGCCTCTCTAATGGTATCAGAGGAGGTGGCAGAAATTCCAGACCACAGTTGCTCCTCAGAGGATCTCTGTTCCCTGGAGGTGCAGGGCTCTGACTCCTCTCCCTATGGCACGCTGCACACCGCCCCCACTGATGGCAGCTGTATCAGTCTAGAGCTCAGTGCCCGCTTCTCCCACCACCACCGCGGCCCGGCCCGGCTCGACGACACTGGCTACAGCGAGTCCTCCCACACCCAGGACTCCATACCCCACTCTCCAGACTGGTCCATAGAGAACAGCAACATACTGGAGCACGAGGAGCCCAAGGGAGGAGTAAAGCTACACGCAAACCTCAGAGAACGAGCCAGTAGGAAGCAGCTGATTCTTCCTGTCCCTcctactcctccctccctgccctctgcctccccctctgcaGCCACAGCCTCCGTAGAGGCAGCCTCAGCAGCCCAGAGCCTCCCTGCCTGCCCCTCCCCGTCCACCCCTGCCCGGCCCCGTGGCTCCCGGCTGTGCTTCAGTGTGTGgtccccatcctcctcttcctccccggCCTCGCAGCCCCCTTCTACCTCAGCGCCCGCAGAGCGACCCCGCATGCTCCGGTCTGGCAGGAGGTATCGCAAGCTGGCTCGCATCGTACGCTCCACCAGCGACCCCATCTCCTGTACCTCCATAACTGGAAGTGACAGCTGTGGCAGCCCCTCTGCAAGCGACCCTCCTCCTGAAGATTCTCCTCAGACTTCACCAGAGCAAGAGTCCACAGAGGTGGCAGCTCCTCCCCACGCCGCTGCCAAAGTCAGCACCCGCAGTGGTAGAAAGCAGAAGGAGGGGAGGAAAGTGGACATCCGCCTCAAACCGCGAGCCCTGCACACGGTCTCCAACGAGCGTCCACACTCTCTGGCTGACCTCAAGACGTATAAAGACACCAAAATCCTGGTGGCCAAATTCCTGGAGCACTCCAGCTGCAGTCTACCTCCAGAGGTCCAGCAGGTGGTCAACAGCATCAAGTATGTCATCAAGTCTGACGAGAGACACATGGAGGAAGCTATATTCAGTGCCAATGTCATAGATCAGGTGATGACACAATCACAACGCATCATCGGCAGCCCAAGGAAGCGTGCCCATGAAGACTTGCACCTACAAAGCTGTGGGGCCTTGAGTTCCCCTTCCTCATCCCTGCGCCGTCCACCTACAGCACCAGGGCCTCCCAACCCCCCTGCTTCCGTGGactcctctccctcaccctctgaaCGCACTCAAAGCCTTTTGTGTAGAGAGACCATCCTTTGACTGCCCTCCCTCCCCACCAAGGACTCAACCTCTATTTCTATCTCATAGTGCCCTGTGAGACTGTGCCAAGACTTTAGCAGAAACAAACTCAGTAGGTCATGTCTGGAGTGGATTGGCTTCTGTTCTCTCTATCTCATATCAAAAACAGCAGAATGTTATCTTCTCCCTCAGGGGACTTTTTAACAGTCTCAACCCTGTAAACACACTTGTAAGCCAACTAAATGGAGACGTCGTGATGAAAAACTAGTGCTCTACTTTATGAAAAGGAAAGAAAAACAACTTTGTATTAAAACTGTGAACTGGACCGTTTTGGGATGGTACTAGCTCCAGCAgactttgtggattttgattggCTGAATACTGTGTGCCACTGCAGGACAGAGAACGTTACAAAAGTGGATTATTTAACTTACCTCAATGTGTTACAGTTCTTATCAGTGTTACAATAAAATATGACTTTCTA
>XM_021586041.2
AACAGCGTGTAGCTAGCTGCATCTCCTCCCGCCGCGGGTAGTTTGCTGTCGTCTGTGAAAACCCTGCGCCTGTGTGAAATAGCATACCCACGGCCACGCTCTCTCTGCATGTAACCTGCTGCGCGTTTGACAGTGGAATACTAGCCTACATAAAAGGGTGACATTATTCCCGTTTCATTTCAGCTATACGTTTTTACTTGCCGATGTTCTTTAAAATGTATCCTGTAGCAATGAAAATAAGGAAGTATAATGAATCCTCGTGGACTATGATTTGATGGACCATTTCTCAAGCTTTTCCTCGAAAACCCGGTTACCTTACCTAATAGCTCGTTATCCTGTGTTTTTGCGGAATCGATTTGGGTAGCAGCACAAGAAAGTCACTACGCATCTCATCCATCACACTGTTGTAGCCTTCAGAATAACAGGCATTTACACATCTGCATCTTGGGATAATTAATGCAATTTAATGGAGTCTCTTTCAAAGGAACCATTTAGTAGGACTGGTGTTATATGCTTTTTGGACACCGTTGCTTATCAAGCTTAACGTTTGGACATCGGTTACTTGCTTTGCTGTTAGGTACCACTTTTGGATGCTGATGGAAATAGCTTAACCCTATTTTTTCGATAGCTGATACATCAACTGTTTTCTTCGTGATAATGCCAGTCCAAGCAATGCCCCGAGGTCGTTCGCTCAGCCCCGCGTCCCTGTCCCGTAGCCTCTCCAGACTCAGGGAGTTTCGGACTCGGACTCGGATCATGCTTTCTCTCGGAGTTTCTCAGATGGTTTTGGGAAGTCTGATTTTGGCAGTCAGTTTTGCCGCTCTGGCCCTCACTACCTCACCAAGGGTCAGACATTCGTGTCCATTTTGGGCAGGTTTCTCTGTGCTGCTGTCTGGACTGATAGGAGTGGTGTCATGGAAGAGGCCTCTCTCTCTGGTGATCACCTTCTTCATGCTGCTGTCGGCGGTATGTGTGATGCTCAACCTGGCTGGCTCCATCCTGTCCTGCCAGAACGCTCAGTTGGTCAACTCCCTGGAGGACTGTCAGCTGATAAAGTTTGAcagtgacggtgtgtgtgtgtgctgtgaacTGCAGCACCAGAGCTCCAGCTGCAACAACCTCGGAGAGACGCTCAAACTGAACCCACTGAGCGACTGCGACACCATACGCCAACACCTCAAGGAGCTCCTGTTTAGTGTGTGCGCCCTGAATGTCATCTCCACCATCGTCTGTGCCCTGGCCACTGCCATGTGCTGCATGCAGATGGTCTCCACTGATGTGCTACAGATCtTCATGCCACACAGAGCACGAGCCCTGAGCGCTGACTGCATGACCCCCCACGGCACCATCCTGCACCAGAACCTTGACTTTGACGAGTTCAtcccacccatccctccaccaccctactacccCCCAGAGTACACCTGCACCCCGGTGATGGACGGGCAGAGAAGTCTACATCTGGACTTTCCACACTCCCCTTTCAGTGCCATCTATGGAGTACCCATCAACAGCCCTGGGACACTCTACCCCTCTGAGTTGCCCCCGTCATACGAGTCTGTggtggggatggggatggggcagACCCCTGCCAGTCAGGTCACTACCAGCATTGATCAGCAGGCCACTGAGTCCAGCCTCTGTGAGAGAAACACCACAGCTGGTCTCAGTACTCAGGCCTCGGTGGACAGTGCCTCTCTAATGGTATCAGAGGAGGTGGCAGAAATTCCAGACCACAGTTGCTCCTCAGAGGATCTCTGTTCCCTGGAGGTGCAGGGCTCTGACTCCTCTCCCTATGGCACGCTGCACACCGCCCCCACTGATGGCAGCTGTATCAGTCTAGAGCTCAGTGCCCGCTTCTCCCACCACCACCGCGGCCCGGCCCGGCTCGACGACACTGGCTACAGCGAGTCCTCCCACACCCAGGACTCCATACCCCACTCTCCAGACTGGTCCATAGAGAACAGCAACATACTGGAGCACGAGGAGCCCAAGGGAGGAGTAAAGCTACACGCAAACCTCAGAGAACGAGCCAGTAGGAAGCAGCTGATTCTTCCTGTCCCTcctactcctccctccctgccctctgcctccccctctgcaGCCACAGCCTCCGTAGAGGCAGCCTCAGCAGCCCAGAGCCTCCCTGCCTGCCCCTCCCCGTCCACCCCTGCCCGGCCCCGTGGCTCCCGGCTGTGCTTCAGTGTGTGgtccccatcctcctcttcctccccggCCTCGCAGCCCCCTTCTACCTCAGCGCCCGCAGAGCGACCCCGCATGCTCCGGTCTGGCAGGAGGTATCGCAAGCTGGCTCGCATCGTACGCTCCACCAGCGACCCCATCTCCTGTACCTCCATAACTGGAAGTGACAGCTGTGGCAGCCCCTCTGCAAGCGACCCTCCTCCTGAAGATTCTCCTCAGACTTCACCAGAGCAAGAGTCCACAGAGGTGGCAGCTCCTCCCCACGCCGCTGCCAAAGTCAGCACCCGCAGTGGTAGAAAGCAGAAGGAGGGGAGGAAAGTGGACATCCGCCTCAAACCGCGAGCCCTGCACACGGTCTCCAACGAGCGTCCACACTCTCTGGCTGACCTCAAGACGTATAAAGACACCAAAATCCTGGTGGCCAAATTCCTGGAGCACTCCAGCTGCAGTCTACCTCCAGAGGTCCAGCAGGTGGTCAACAGCATCAAGTATGTCATCAAGTCTGACGAGAGACACATGGAGGAAGCTATATTCAGTGCCAATGTCATAGATCAGGTGATGACACAATCACAACGCATCATCGGCAGCCCAAGGAAGCGTGCCCATGAAGACTTGCACCTACAAAGCTGTGGGGCCTTGAGTTCCCCTTCCTCATCCCTGCGCCGTCCACCTACAGCACCAGGGCCTCCCAACCCCCCTGCTTCCGTGGactcctctccctcaccctctgaaCGCACTCAAAGCCTTTTGTGTAGAGAGACCATCCTTTGACTGCCCTCCCTCCCCACCAAGGACTCAACCTCTATTTCTATCTCATAGTGCCCTGTGAGACTGTGCCAAGACTTTAGCAGAAACAAACTCAGTAGGTCATGTCTGGAGTGGATTGGCTTCTGTTCTCTCTATCTCATATCAAAAACAGCAGAATGTTATCTTCTCCCTCAGGGGACTTTTTAACAGTCTCAACCCTGTAAACACACTTGTAAGCCAACTAAATGGAGACGTCGTGATGAAAAACTAGTGCTCTACTTTATGAAAAGGAAAGAAAAACAACTTTGTATTAAAACTGTGAACTGGACCGTTTTGGGATGGTACTAGCTCCAGCAgactttgtggattttgattggCTGAATACTGTGTGCCACTGCAGGACAGAGAACGTTACAAAAGTGGATTATTTAACTTACCTCAATGTGTTACAGTTCTTATCAGTGTTACAATAAAATATGACTTTCTA

Function

NR:

description
protein FAM189A1-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963964.1 False 2837 mRNA 0.55 12 23474206 23647659
XM_021586042.2 False 3333 mRNA 0.53 11 23474213 23648203
XM_021586041.2 True 3439 mRNA 0.53 12 23474215 23648203
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506437 LOC106562151 coding upstream 994 23320081 ~ 23473212 (+)
LOC110506436 NA coding upstream 202261 23268093 ~ 23271945 (+)
LOC110506433 LOC106587247 coding upstream 207404 23180806 ~ 23266802 (+)
LOC110506431 LOC106562156 coding upstream 296997 23175882 ~ 23177209 (+)
pkd1l3 LOC106587158 coding upstream 320300 23147547 ~ 23153906 (+)
LOC110506439 casc4 coding downstream 867 23649070 ~ 23680333 (+)
LOC110506441 LOC106562148 coding downstream 32681 23680884 ~ 23706352 (+)
LOC110506442 LOC106587240 coding downstream 67827 23716030 ~ 23721956 (+)
LOC110506444 eif3j coding downstream 76215 23724418 ~ 23728853 (+)
LOC110506448 NA coding downstream 382765 24030968 ~ 24037129 (+)
G2011804 NA non-coding upstream 25804 23447663 ~ 23448402 (+)
G2011729 NA non-coding upstream 43824 23429512 ~ 23430382 (+)
G2011798 NA non-coding upstream 51776 23422168 ~ 23422430 (+)
G2011735 NA non-coding upstream 169991 23298522 ~ 23304215 (+)
G2011915 NA non-coding downstream 12568 23660771 ~ 23661139 (+)
G2011958 NA non-coding downstream 128450 23776653 ~ 23794202 (+)
G2011975 NA non-coding downstream 167121 23815324 ~ 23815588 (+)
G2011990 NA non-coding downstream 204884 23853087 ~ 23853383 (+)
G2011992 NA non-coding downstream 206288 23854491 ~ 23854710 (+)
G2010795 NA other upstream 412530 23061179 ~ 23061676 (+)
G2010496 NA other upstream 1030770 22443118 ~ 22443436 (+)
G2010267 NA other upstream 1406965 22058096 ~ 22067241 (+)
G2009770 NA other upstream 1634965 21838703 ~ 21839241 (+)
G2009769 NA other upstream 1636048 21837723 ~ 21838158 (+)
G2012007 NA other downstream 234999 23883202 ~ 23886340 (+)
G2012820 NA other downstream 682172 24330375 ~ 24330718 (+)
LOC110506460 LOC106562133 other downstream 1069531 24717649 ~ 24729611 (+)
G2013403 NA other downstream 1169130 24817333 ~ 24818101 (+)

Expression

LOC110506438(LOC106587243) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110506438(LOC106587243) Expression in each Bioproject

Bar chart with 20 bars.
LOC110506438(LOC106587243) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network