LOC110506498 (LOC106587194)


Basic Information

Item Value
gene id LOC110506498
gene name LOC106587194
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 26142212 ~ 26150532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586145.2
GGTACGGGAATCAAATAACAGTGAGACGTCAGATGGCTGCGCAAATACTTGGAATTCCGGTTCCGTCGTTGGCTATTCCGTAAACTTTGACAAGCAGAAAGTTGTATTTATATGATAGGCTACAACAGTCTCAATAGCTTGAATACCCAGTAATAAACTGGAAATGGCTTCTTCGCCACAGAAATCACCTTCTTCTCCCAAATCCCCGACTCCAAAATCACCACCTTCAAGAAAAAAAGATGACTCTTTCCTCGGAAAACTTGGGGGAACTTTGGCCAGAAGAAAAAAGGCAAAAGAAGTGTCTGAGCTCCAGGAGGAGGGGATGAATGCCATCAACCTGCCGCTCAGTCCCATCCCCTTTGAGCTGGACCCAGAGGACACCATGCTGGAGGAGAATGAGGTCCGCACCATGGTTGACCCTAACTCCAGAAATGACCCCAAACTGCAAGAACTGATGAAGGTACTCATAGACTGGATCAATGATGTGCTGGTGGGGGAGAGAATCATTGTCAAAGACCTGGCTGAAGACCTCTACGATGGGCAGGTTCTGCAGAAACTATTTGAGAAGCTGGAGGGTGAGCGGCTGAATGTGGCTGAGGTGACCCAGTCTGAGATAGCCCAGAAGCAGAAGTTGCAGACAGTTCTGGAGAAGATCAACGACACTCTGAAGGTCTCAATCAGAAACATCAAATGGACCATTGACTCTGTCCATGCTAAAAGCATCGTGGCCATTCTCCATTTATTGGTGGCGCTGTCTCAGCACTGCCGCGCCCCCATCCGCCTACCTGATCATGTGTCCATTCAAGTTGTGGTTGTACAGAAACGGGAGGGGATCCTGCAGTCTCGCCAGGTTCAGGAAGAGATCACAGGGAACACGGAGGCTCTATCAGGAAGACATGAACGAGATGCGTTTGACACTTTGTTTGACCATGCACCAGACAAGCTGAATGTGGTGAAAAAGACTCTGATCACCTTTGTGAACAAGTACTTGAACAAGTTGAACCTGGAGGTGTCTGAATTGGACACACAGTTTGCTGATGGTGTGTACCTGGTGTTGCTGATGGGACTGCTTGAGGGCTACTTTGTTCCTCTCTTCAACTTCTTCCTAACGCCAGAGCATTTTGACCAAAAGGTGCACAATGTGGCTTTCTCCTTTGAGCTGATGCAAGATGGAGGCCTGGAGAAACCCAAGCCACGGGCAGAGGATATTGTGAACTGTGACCTGAAGTCTACTCTGAGGGTACTCTACAACCTCTTCACCAAATACAGAAATGTGGAATAAAGACGAGAGCTTCACCGTTCATTCAGTTATATCGACGTATCTATCAAGCAAATGCCCTGTTTAGATGTATATTTCAGGGCAAACACGATGCATCTAATAGGGAGAGCACACCTGTGTTAGCTTTGTCCTGCTGAAGGCTCACTAAAACACAAGTACAGCACAGTATGTTGTAAAGTGTTTGGATATGAAAAGACAGATATATTTCAGTATTATTGAAGGTTAACTTAATGAGTTATTGATTATGCCGTCGTATTGTTGAGTCATTGCCATGTTGAATTGTTCTTGCCCATGTCATTCCGGGCCGACACCGTTTGAAGTCTACTTGGATTCACATGAAGGATCAGAATATTGATGTATTGAATGTATGACAGCTGAGTTTGTGCTTATCAAAGTATTGACTTCCATCTTTTGAAAGAAATCAGAAGTTTTGAATTGACTCAGAAGGTTTTTGGTTGTTGTGCTTAAAGCAGTGGGACCACATACAGTGCACACTATTCATTTATATACTGCCACGCTGCATATGTTTACCTTTGTTTGCTTTGTCTACTTTTATATATTTTAATACTGGTCATTGTACTTTAAATATAGTCTACCTGTAGTGGTATTTTGGCTCATCATTTACCAAAGATAGTATTTTAGATACATTATTTGAAGCTGTTAGATTCTTTAAAATATTTTCTACTTATGCAAAGCATGATGTAtggctaattttgaatatttgttTATAATCTATTCATAAAAAAAGGGTTGCAAAGTAAAA

Function

NR:

description
PREDICTED: alpha-parvin

GO: NA

KEGG:

id description
K06275 PARV; parvin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586145.2 True 2042 mRNA 0.43 13 26142212 26150532
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506490 LOC106587195 coding downstream 6667 26074715 ~ 26135545 (-)
LOC110506489 LOC106562108 coding downstream 70018 26070052 ~ 26072194 (-)
LOC110506482 LOC106562106 coding downstream 132467 25991642 ~ 26009745 (-)
LOC118944449 NA coding downstream 196211 25896302 ~ 25946001 (-)
LOC110506095 LOC106562105 coding downstream 401496 25733189 ~ 25740716 (-)
LOC110506499 LOC106587193 coding upstream 5465 26155997 ~ 26200337 (-)
LOC110506502 LOC106562100 coding upstream 57423 26207955 ~ 26230654 (-)
clec3a LOC106562113 coding upstream 82577 26233109 ~ 26235023 (-)
LOC110506505 LOC106562097 coding upstream 88103 26238635 ~ 26269200 (-)
bola3 bola3 coding upstream 122194 26272579 ~ 26276831 (-)
G2014895 NA non-coding downstream 106854 26035126 ~ 26035358 (-)
G2014892 NA non-coding downstream 110032 26031902 ~ 26032180 (-)
G2014856 NA non-coding downstream 164038 25977968 ~ 25978174 (-)
G2014831 NA non-coding downstream 202175 25939692 ~ 25940037 (-)
G2014764 NA non-coding downstream 310002 25829741 ~ 25832210 (-)
G2015219 NA non-coding upstream 46358 26196890 ~ 26197279 (-)
G2015226 NA non-coding upstream 53194 26203726 ~ 26205138 (-)
G2015354 NA non-coding upstream 256944 26407476 ~ 26407695 (-)
G2015358 LOC106562090 non-coding upstream 275448 26425980 ~ 26430254 (-)
G2014702 LOC106562103 other downstream 411832 25727652 ~ 25730380 (-)
LOC110506491 LOC106562111 other downstream 461314 25675687 ~ 25681379 (-)
G2013483 NA other downstream 1291576 24850270 ~ 24850636 (-)
LOC110506455 LOC106562138 other downstream 1645404 24486973 ~ 24599682 (-)
G2012712 NA other downstream 1920134 24206280 ~ 24222078 (-)
G2015668 NA other upstream 451247 26601779 ~ 26602259 (-)
G2015718 NA other upstream 534817 26685349 ~ 26735236 (-)
G2015737 NA other upstream 628207 26778739 ~ 26784661 (-)
G2016013 NA other upstream 935398 27085930 ~ 27086265 (-)

Expression

LOC110506498(LOC106587194) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110506498(LOC106587194) Expression in each Bioproject

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LOC110506498(LOC106587194) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network