Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110506517 |
| gene name | LOC106562084 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 26626173 ~ 26907118 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036963766.1 | False | 7490 | mRNA | 0.55 | 42 | 26626173 | 26907118 |
| XM_036963767.1 | False | 7427 | mRNA | 0.55 | 41 | 26626173 | 26907118 |
| XM_036963768.1 | False | 7406 | mRNA | 0.55 | 41 | 26626173 | 26907118 |
| XM_036963769.1 | False | 7406 | mRNA | 0.55 | 41 | 26626173 | 26907118 |
| XM_036963770.1 | False | 7334 | mRNA | 0.55 | 41 | 26626173 | 26907118 |
| XM_036963771.1 | False | 7268 | mRNA | 0.54 | 41 | 26626173 | 26907118 |
| XR_005039779.1 | False | 5310 | mRNA | 0.61 | 36 | 26634262 | 26907118 |
| TU2305604 | True | 947 | lncRNA | 0.34 | 1 | 26626481 | 26627427 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| psmd7 | LOC106587187 | coding | downstream | 284250 | 26336554 ~ 26341923 (-) |
| LOC110506506 | LOC101448035 | coding | downstream | 337486 | 26280732 ~ 26288687 (-) |
| bola3 | bola3 | coding | downstream | 349342 | 26272579 ~ 26276831 (-) |
| LOC110506505 | LOC106562097 | coding | downstream | 356973 | 26238635 ~ 26269200 (-) |
| clec3a | LOC106562113 | coding | downstream | 391150 | 26233109 ~ 26235023 (-) |
| LOC110506519 | zfhx3 | coding | upstream | 26720 | 26933838 ~ 27127646 (-) |
| LOC118944563 | NA | coding | upstream | 281199 | 27188317 ~ 27189379 (-) |
| LOC118944564 | NA | coding | upstream | 363330 | 27270448 ~ 27276437 (-) |
| LOC118944565 | NA | coding | upstream | 437369 | 27344487 ~ 27349649 (-) |
| LOC110506521 | LOC106587327 | coding | upstream | 566431 | 27473549 ~ 27496550 (-) |
| G2015680 | NA | non-coding | downstream | 8007 | 26615925 ~ 26618166 (-) |
| G2015662 | NA | non-coding | downstream | 31543 | 26594060 ~ 26594630 (-) |
| G2015651 | NA | non-coding | downstream | 47377 | 26578569 ~ 26578796 (-) |
| G2015447 | NA | non-coding | downstream | 89961 | 26531288 ~ 26536212 (-) |
| G2015446 | NA | non-coding | downstream | 91994 | 26529118 ~ 26534179 (-) |
| G2015814 | NA | non-coding | upstream | 1543 | 26908661 ~ 26908878 (-) |
| G2015818 | NA | non-coding | upstream | 5930 | 26913048 ~ 26913356 (-) |
| G2015965 | NA | non-coding | upstream | 79192 | 26986310 ~ 26986701 (-) |
| G2015967 | NA | non-coding | upstream | 84487 | 26991605 ~ 26991820 (-) |
| G2015668 | NA | other | downstream | 23914 | 26601779 ~ 26602259 (-) |
| G2014702 | LOC106562103 | other | downstream | 895793 | 25727652 ~ 25730380 (-) |
| LOC110506491 | LOC106562111 | other | downstream | 945275 | 25675687 ~ 25681379 (-) |
| G2013483 | NA | other | downstream | 1775537 | 24850270 ~ 24850636 (-) |
| G2016013 | NA | other | upstream | 178812 | 27085930 ~ 27086265 (-) |
| G2017021 | NA | other | upstream | 1170779 | 28077897 ~ 28078556 (-) |
| polr2m | NA | other | upstream | 1265725 | 28171095 ~ 28173731 (-) |
| G2018044 | rsl24d1 | other | upstream | 1801786 | 28708904 ~ 28712453 (-) |
| G2018139 | cmtr2 | other | upstream | 2007844 | 28914962 ~ 28917197 (-) |
| G2015694 | NA | non-coding | upstream | 4805 | 26632232 ~ 26632437 (-) |
| G2015695 | NA | non-coding | upstream | 5525 | 26632952 ~ 26633228 (-) |
| G2015696 | NA | non-coding | upstream | 6990 | 26634417 ~ 26634789 (-) |
| G2015700 | NA | non-coding | upstream | 14668 | 26642095 ~ 26642330 (-) |
| G2015702 | NA | non-coding | upstream | 20204 | 26647631 ~ 26647889 (-) |
| G2015718 | NA | other | upstream | 57922 | 26685349 ~ 26735236 (-) |
| G2015737 | NA | other | upstream | 151312 | 26778739 ~ 26784661 (-) |
