ogfod1 (LOC106587419)


Basic Information

Item Value
gene id ogfod1
gene name LOC106587419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 28757369 ~ 28767322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586268.2
CACCGAAAAGACTCGGAACCACTAACGTCCTGCTGTGTTATGACGCAATTTAACCGCGACTCATTTATACAAAAATGAATTGTAAACGACAGCGAGATAGCGAGAATGCCGAGAAAGGAAAGAAGAGAAATAAACGCGAAGAGAGAGCAGAACTTTCTGCACTACTCGAGGACGAAGATGTGAAAAGGGAAGTGAAGGAATCATGGTCACAGCGAGCGCAGTACTCTCATGATGTTCTGTTGTGTCATGATGATGAGTTGGAGGGGAGGCGTGTTGCCTTTATCCTCTACCTTGTCCCTCCATGGGAGAGCAGTGATGGAGGAACCCTGGATCTCTTCAGCACAGATGaTCACTTCCAGCCCCATAGTGTGGTGAAGTCTCTGGTGCCCAGCTGGAACACTCTGATTCTCTTTGAGGTTTCACCCATCTCCTTCCACCAGgttgcagaggtgttgtcagaggaTAAGTGTCGTCTCTCTCTGAGTGGCTGGTTTCACGGGCCATCTTTGGAGCGACCCCCTCGTCACATCGAGCCCCCCCTCCCAAGGAGCCCCCACCTTcccagagatGAGACACTGCTGCTAGAGTGGCTGAATCCACTGTATCTGGATGTTGACTACCAGTCACAGGTTCAGCAAGAGTTTGAGGACAGCTCTGAGATCCAGCTCAAGAATTTCCTCAAAGAGGAGAAGTTTAAGGAGGTGAGTGAAGCACTGCGATTGACTGATGTCCAGTGGACCAAGCAAGGTCCTCCCAACAGGAGATGTTATGAAGTGGCTTCGTTAGAGTCCTTCCCCCAGTGTgtgagtgcatgctgggagttgcTGTGCTCGGAGGCTTTCTTCCTGCTTCTGTCCAACTTCACTGGCCTGAGACTGCACTACCTCAGCCCTAGTGATGAagacgaggaggaagagaaggaccaagaagatgaggaagagggagaagcCACAGGGTCATCTGGGGACACACCATCAGCTAATAAGAATAACAAAGAGCCGAGCACACCGGTGTGTGTTGGAGAGCTGCGTCGCTGGGCTCACGGGGACTACACACTACTGCATGATGGAGACGCATCGAAAGCGGAGTACGCCCTTGACCTACTGCTGCCCCTGAGCTGTCCTGACTGGCAGACCGAGTTTGGGGGCTTCACCTCTTACATTGCTaatgaagaggatgaggagCTCCTGATGGTGTATCCAGAGGAGAACTCCCTGGCTCTTGTCTACAGGGACAAAGAGACTCTCAAATTTGTCAAACATATCAATCACAGAAGCTCCACTCTACCTATTGGTGATTCTTGTAGGAGAGCAGTTTATGACTTCTCCTTTGTGTATTATGAATgagtttttgtgtgtatgtgttgaggtGTATGTGTTTGTAATATAACACCACTGTGAGGGGTGGTCGGTCTACTCTAAAGCCTCATGATGTCATGTGTTCTTCATTAAAGTGAACAGGCAGGGATACCCTGTTACCATGATTACCTGGTTTTGGTTGGCAGCCACAGagtaaaacagattttttttaaattgtctaCAGTGACAGCATTTGGTAGTATTTTGTGTTCATTATCTTGTGTCATTATTGTTGCCCTGTATGGCTGAGTTGGTAAAGCATGGCGTtagcaacgccagggttgtgggttagttTCCCGGGGCTACCCAGCCGTAAAATATATGCACACATGACtgcaagtcgctttggataaaagcatctgctaaatggaatataatattattattatatattgcTAGTTTATTTGTATGTGTCTGTAGTATGTGTTCAAACTATCTTACAGTATTCATGCTGTCACTGTAAAAATGAATCTGTCTGCAAGGAAAGTAAACTCCAGAGCAGTGATTGAACATTAGAGAACCAAAtccacacacactcgcacaacCACCACTCCGATGTTAAAATTCTTCACTTGGATATCAAACTGAATAACAAATTAGTAATAACAGCTAAATGTTTGGCAGACCTATGATTTCACTaatctttttacattttttttttttggcccatcCCCTCTTACAATTTTTGTTGTTACATTTACATATGACTCATTTTACATACATGGCACTTTTTTTACACAGTAGTTACATagcaaaatattgttattttaaaTACATTGCATAGTACTTAAACACATCGTATACATTATATCGTTTTTAGTCACCTTAGTGAAAATATTGAAACAATTGTTGCAATCTGACTTAAATTTCGACAAAGGATGGAGCTACATACTGTAGTTATTGATTGTTACACCAGATATTGTGATTTAACCAGAAGCTTTTGGTATCCATTACTGGGAGTTACAGGTTAGGTACTGTTTGGTGTAGCACAGAGAATTTTCGACCAACTTTAACATGGCGACACTGTCTTCGTTCTCGATTCGGGCAAACATATCTTCTAAAATGTCTGTGTCCAATTGCAAGTGGTGCGAAAATTACCCaatattaaaataaatattttgctcCATTAAGTAAT
>XM_021586267.2
ATGAACCGGCTCACCGAAAAGACTCGGAACCACTAACGTCCTGCTGTGTTATGACGCAATTTAACCGCGACTCATTTATACAAAAATGAATTGTAAACGACAGCGAGATAGCGAGAATGCCGAGAAAGGAAAGAAGAGAAATAAACGCGAAGAGAGAGCAGAACTTTCTGCACTACTCGAGGACGAAGATGTGAAAAGGGAAGTGAAGGAATCATGGTCACAGCGAGCGCAGTACTCTCATGGGGACCTGGAGCTGGACTGCCACCCTTTCCCTCACTTGCTCATCAGGAACTTCATCCAGGGTGACAGCTTTACAGAGAACCTACAGAGGGAGCTTCTGGACCTCAACTTCCATGAGAAGTCCAACGACCTGTACAAATTTAATCAGTCAGACGACCTGAAAAAGAGAAAAGAGCCTCACATCACAGGCTTGAGGGCAGCACTATTTGGGCTGTTTCGATCCTGGCTGGGGGAAGTGTTGGGGGTAGAACTGGAGCCCATAGTGGATGTTTCCTGTGCCAAGTACCAATACACTGATGTTCTGTTGTGTCATGATGATGAGTTGGAGGGGAGGCGTGTTGCCTTTATCCTCTACCTTGTCCCTCCATGGGAGAGCAGTGATGGAGGAACCCTGGATCTCTTCAGCACAGATGaTCACTTCCAGCCCCATAGTGTGGTGAAGTCTCTGGTGCCCAGCTGGAACACTCTGATTCTCTTTGAGGTTTCACCCATCTCCTTCCACCAGgttgcagaggtgttgtcagaggaTAAGTGTCGTCTCTCTCTGAGTGGCTGGTTTCACGGGCCATCTTTGGAGCGACCCCCTCGTCACATCGAGCCCCCCCTCCCAAGGAGCCCCCACCTTcccagagatGAGACACTGCTGCTAGAGTGGCTGAATCCACTGTATCTGGATGTTGACTACCAGTCACAGGTTCAGCAAGAGTTTGAGGACAGCTCTGAGATCCAGCTCAAGAATTTCCTCAAAGAGGAGAAGTTTAAGGAGGTGAGTGAAGCACTGCGATTGACTGATGTCCAGTGGACCAAGCAAGGTCCTCCCAACAGGAGATGTTATGAAGTGGCTTCGTTAGAGTCCTTCCCCCAGTGTgtgagtgcatgctgggagttgcTGTGCTCGGAGGCTTTCTTCCTGCTTCTGTCCAACTTCACTGGCCTGAGACTGCACTACCTCAGCCCTAGTGATGAagacgaggaggaagagaaggaccaagaagatgaggaagagggagaagcCACAGGGTCATCTGGGGACACACCATCAGCTAATAAGAATAACAAAGAGCCGAGCACACCGGTGTGTGTTGGAGAGCTGCGTCGCTGGGCTCACGGGGACTACACACTACTGCATGATGGAGACGCATCGAAAGCGGAGTACGCCCTTGACCTACTGCTGCCCCTGAGCTGTCCTGACTGGCAGACCGAGTTTGGGGGCTTCACCTCTTACATTGCTaatgaagaggatgaggagCTCCTGATGGTGTATCCAGAGGAGAACTCCCTGGCTCTTGTCTACAGGGACAAAGAGACTCTCAAATTTGTCAAACATATCAATCACAGAAGCTCCACTCTACCTATTGGTGATTCTTGTAGGAGAGCAGTTTATGACTTCTCCTTTGTGTATTATGAATgagtttttgtgtgtatgtgttgaggtGTATGTGTTTGTAATATAACACCACTGTGAGGGGTGGTCGGTCTACTCTAAAGCCTCATGATGTCATGTGTTCTTCATTAAAGTGAACAGGCAGGGATACCCTGTTACCATGATTACCTGGTTTTGGTTGGCAGCCACAGagtaaaacagattttttttaaattgtctaCAGTGACAGCATTTGGTAGTATTTTGTGTTCATTATCTTGTGTCATTATTGTTGCCCTGTATGGCTGAGTTGGTAAAGCATGGCGTtagcaacgccagggttgtgggttagttTCCCGGGGCTACCCAGCCGTAAAATATATGCACACATGACtgcaagtcgctttggataaaagcatctgctaaatggaatataatattattattatatattgcTAGTTTATTTGTATGTGTCTGTAGTATGTGTTCAAACTATCTTACAGTATTCATGCTGTCACTGTAAAAATGAATCTGTCTGCAAGGAAAGTAAACTCCAGAGCAGTGATTGAACATTAGAGAACCAAAtccacacacactcgcacaacCACCACTCCGATGTTAAAATTCTTCACTTGGATATCAAACTGAATAACAAATTAGTAATAACAGCTAAATGTTTGGCAGACCTATGATTTCACTaatctttttacattttttttttttggcccatcCCCTCTTACAATTTTTGTTGTTACATTTACATATGACTCATTTTACATACATGGCACTTTTTTTACACAGTAGTTACATagcaaaatattgttattttaaaTACATTGCATAGTACTTAAACACATCGTATACATTATATCGTTTTTAGTCACCTTAGTGAAAATATTGAAACAATTGTTGCAATCTGACTTAAATTTCGACAAAGGATGGAGCTACATACTGTAGTTATTGATTGTTACACCAGATATTGTGATTTAACCAGAAGCTTTTGGTATCCATTACTGGGAGTTACAGGTTAGGTACTGTTTGGTGTAGCACAGAGAATTTTCGACCAACTTTAACATGGCGACACTGTCTTCGTTCTCGATTCGGGCAAACATATCTTCTAAAATGTCTGTGTCCAATTGCAAGTGGTGCGAAAATTACCCaatattaaaataaatattttgctcCATTAAGTAAT
>XM_036964079.1
ATGAACCGGCTCACCGAAAAGACTCGGAACCACTAACGTCCTGCTGTGTTATGACGCAATTTAACCGCGACTCATTTATACAAAAATGAATTGTAAACGACAGCGAGATAGCGAGAATGCCGAGAAAGGAAAGAAGAGAAATAAACGCGAAGAGAGAGCAGAACTTTCTGCACTACTCGAGGACGAAGATGTGAAAAGGGAAGTGAAGGAATCATGGTCACAGCGAGCGCAGTACTCTCATGGGGACCTGGAGCTGGACTGCCACCCTTTCCCTCACTTGCTCATCAGGAACTTCATCCAGGGTGACAGCTTTACAGAGAACCTACAGAGGGAGCTTCTGGACCTCAACTTCCATGAGAAGTCCAACGACCTGTACAAATTTAATCAGTCAGACGACCTGAAAAAGAGAAAAGAGCCTCACATCACAGGCTTGAGGGCAGCACTATTTGGGCTGTTTCGATCCTGGCTGGGGGAAGTGTTGGGGGTAGAACTGGAGCCCATAGTGGATGTTTCCTGTGCCAAGTACCAATACACTGATGTTCTGTTGTGTCATGATGATGAGTTGGAGGGGAGGCGTGTTGCCTTTATCCTCTACCTTGTCCCTCCATGGGAGAGCAGTGATGGAGGAACCCTGGATCTCTTCAGCACAGATGaTCACTTCCAGCCCCATAGTGTGGTGAAGTCTCTGGTGCCCAGCTGGAACACTCTGATTCTCTTTGAGGTTTCACCCATCTCCTTCCACCAGGAGACACTGCTGCTAGAGTGGCTGAATCCACTGTATCTGGATGTTGACTACCAGTCACAGGTTCAGCAAGAGTTTGAGGACAGCTCTGAGATCCAGCTCAAGAATTTCCTCAAAGAGGAGAAGTTTAAGGAGGTGAGTGAAGCACTGCGATTGACTGATGTCCAGTGGACCAAGCAAGGTCCTCCCAACAGGAGATGTTATGAAGTGGCTTCGTTAGAGTCCTTCCCCCAGTGTgtgagtgcatgctgggagttgcTGTGCTCGGAGGCTTTCTTCCTGCTTCTGTCCAACTTCACTGGCCTGAGACTGCACTACCTCAGCCCTAGTGATGAagacgaggaggaagagaaggaccaagaagatgaggaagagggagaagcCACAGGGTCATCTGGGGACACACCATCAGCTAATAAGAATAACAAAGAGCCGAGCACACCGGTGTGTGTTGGAGAGCTGCGTCGCTGGGCTCACGGGGACTACACACTACTGCATGATGGAGACGCATCGAAAGCGGAGTACGCCCTTGACCTACTGCTGCCCCTGAGCTGTCCTGACTGGCAGACCGAGTTTGGGGGCTTCACCTCTTACATTGCTaatgaagaggatgaggagCTCCTGATGGTGTATCCAGAGGAGAACTCCCTGGCTCTTGTCTACAGGGACAAAGAGACTCTCAAATTTGTCAAACATATCAATCACAGAAGCTCCACTCTACCTATTGGTGATTCTTGTAGGAGAGCAGTTTATGACTTCTCCTTTGTGTATTATGAATgagtttttgtgtgtatgtgttgaggtGTATGTGTTTGTAATATAACACCACTGTGAGGGGTGGTCGGTCTACTCTAAAGCCTCATGATGTCATGTGTTCTTCATTAAAGTGAACAGGCAGGGATACCCTGTTACCATGATTACCTGGTTTTGGTTGGCAGCCACAGagtaaaacagattttttttaaattgtctaCAGTGACAGCATTTGGTAGTATTTTGTGTTCATTATCTTGTGTCATTATTGTTGCCCTGTATGGCTGAGTTGGTAAAGCATGGCGTtagcaacgccagggttgtgggttagttTCCCGGGGCTACCCAGCCGTAAAATATATGCACACATGACtgcaagtcgctttggataaaagcatctgctaaatggaatataatattattattatatattgcTAGTTTATTTGTATGTGTCTGTAGTATGTGTTCAAACTATCTTACAGTATTCATGCTGTCACTGTAAAAATGAATCTGTCTGCAAGGAAAGTAAACTCCAGAGCAGTGATTGAACATTAGAGAACCAAAtccacacacactcgcacaacCACCACTCCGATGTTAAAATTCTTCACTTGGATATCAAACTGAATAACAAATTAGTAATAACAGCTAAATGTTTGGCAGACCTATGATTTCACTaatctttttacattttttttttttggcccatcCCCTCTTACAATTTTTGTTGTTACATTTACATATGACTCATTTTACATACATGGCACTTTTTTTACACAGTAGTTACATagcaaaatattgttattttaaaTACATTGCATAGTACTTAAACACATCGTATACATTATATCGTTTTTAGTCACCTTAGTGAAAATATTGAAACAATTGTTGCAATCTGACTTAAATTTCGACAAAGGATGGAGCTACATACTGTAGTTATTGATTGTTACACCAGATATTGTGATTTAACCAGAAGCTTTTGGTATCCATTACTGGGAGTTACAGGTTAGGTACTGTTTGGTGTAGCACAGAGAATTTTCGACCAACTTTAACATGGCGACACTGTCTTCGTTCTCGATTCGGGCAAACATATCTTCTAAAATGTCTGTGTCCAATTGCAAGTGGTGCGAAAATTACCCaatattaaaataaatattttgctcCATTAAGTAAT

Function

NR:

description
prolyl 3-hydroxylase OGFOD1 isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K24029 OGFOD1, TPA1; prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586268.2 False 2493 mRNA 0.44 10 28757369 28767311
XM_021586267.2 False 2798 mRNA 0.45 13 28757369 28767322
XM_036964079.1 True 2669 mRNA 0.44 12 28757369 28767322

Neighbor

gene id symbol gene type direction distance location
LOC110506559 LOC106562229 coding downstream 978 28744813 ~ 28756391 (-)
gnao1b LOC106562227 coding downstream 18026 28726744 ~ 28739343 (-)
LOC110506551 NA coding downstream 87269 28668540 ~ 28670100 (-)
LOC110506552 NA coding downstream 101942 28653532 ~ 28655427 (-)
tex9 tex9 coding downstream 363619 28388072 ~ 28393750 (-)
cpsf5 cpsf5 coding upstream 422 28767744 ~ 28772715 (-)
acd LOC106562231 coding upstream 7583 28774905 ~ 28782415 (-)
LOC110506560 LOC106562232 coding upstream 15244 28782566 ~ 28790323 (-)
LOC110506562 LOC106562233 coding upstream 23693 28791015 ~ 28802011 (-)
LOC110506563 LOC106562234 coding upstream 35560 28802882 ~ 28815359 (-)
G2018084 NA non-coding downstream 36018 28721117 ~ 28721351 (-)
G2018044 rsl24d1 non-coding downstream 44916 28708904 ~ 28712453 (-)
G2018071 NA non-coding downstream 60922 28696137 ~ 28696447 (-)
G2018037 NA non-coding downstream 86641 28661509 ~ 28670728 (-)
G2018061 NA non-coding upstream 19743 28787065 ~ 28845081 (-)
G2018119 NA non-coding upstream 84567 28851889 ~ 28855192 (-)
G2018118 NA non-coding upstream 88032 28855354 ~ 28858871 (-)
G2018057 LOC106562238 non-coding upstream 106758 28874080 ~ 28875769 (-)
G2018128 NA non-coding upstream 122056 28889378 ~ 28889593 (-)
polr2m NA other downstream 583793 28171095 ~ 28173731 (-)
G2017021 NA other downstream 678813 28077897 ~ 28078556 (-)
G2016013 NA other downstream 1671104 27085930 ~ 27086265 (-)
G2015737 NA other downstream 1972708 26778739 ~ 26784661 (-)
G2018139 cmtr2 other upstream 147640 28914962 ~ 28917197 (-)
G2018367 NA other upstream 523313 29290635 ~ 29291601 (-)
G2018415 NA other upstream 618736 29386058 ~ 29386388 (-)
G2018508 NA other upstream 762584 29529906 ~ 29530613 (-)
LOC110506621 LOC106562298 other upstream 1826477 30556981 ~ 30604748 (-)

Expression

ogfod1(LOC106587419) Expression in all Baseline Samples

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ogfod1(LOC106587419) Expression in each Bioproject

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ogfod1(LOC106587419) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network