LOC110506592 (LOC106587383)


Basic Information

Item Value
gene id LOC110506592
gene name LOC106587383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 29467564 ~ 29536864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963610.1
GACAGATGGTACATACTGTTGGTGCTGCTCTAACTGCTCTGTCATTGATTCAGTAGTAACACAGTCGTCAGTccacagcctgcctgcctgcagagagagagccaaaacaggaagagagaaagagaggacacaaggagagaagaaaagagagtgattgtgagagagagaagcagggaaagCGTCCAGCCATCTTTCTGTCTCCAGTCTGAAAGCCACAGACGCCCTCTTTGTTTGGCGTCCCTGATATGACCCTGTTCAAAAGTGAGCACCACCGCAGCCCACGATACATTAGCATGAGTGGAGAGCTGAAGTCCAGCCGTTCCAGGACCAGCAGCAAGAGACCCAGCAGCAATCCATACGGatctGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGTGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGCACAGACGCAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGAGAATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACTCTGATAAAGACACAGATTGACGGGCTGCTTGACAACCTGGACAGGATGGACACACAGAGGCAGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGCCTGGCCGGGTCACCGTACTCCCCCTCCGCCAGCAGTGGTGAGCGCTCACCCTCCCCCCTGTCCCCCCCACGCCGCTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCCCACGGTAACTGGCttgatgtctgtgtgtggagaatCTCTGAATatgAATAACCACAGCTCTGACCCTGAGGACGAGATGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTCGTCAAGAAGTTGCCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCTAACCAACCAGTTACATTTTATTCTACATCCACATATACATCAAACAGAaatacactactacacactactacacacaccacttTGTGTTCAGAGTTAGCCTCTTTAGGTTCTAAATCatctattcctcctctctctgtctggtaaCGGCAGATATTGTATGTGTGAacagcacacacatacagacacacaggcacacacacacacacacacactgtaattacAGTTTATCAGAAATCAACTCCATGTATCTCCCTTGGCTATTCCCCACTGAGATcagctcaccacacacacacacacacacacacacacacacacacacacacacattttatctGTAGAGTGTAATTATTAACCAGAACAGGAAGGTGAAATCATTTCCATATTTATAATTTTCTTACGCTCTTTTTAGCACGTCTTCATATTTTCCTGAAAAACATTCTGATTACAAATCCGTATAAATTTTACCTGCATATTGAGAGACTGGGTTTTTTGAAATGAGCATACTATAGATGTCACAATCATAGTTTTTCAGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTACCAGAGCATGAGTTCATCAGTTTATACTTGTCCATCAGTTAAAATCCCCCGTATGTCTGTGTAATGTTATCTCCCTGCTGTACCTGCCTGTATTAGGTACGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCAGCCCGGTCCATGTGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCATCATTTTGTTTTagggttttttatttgttaatgtTTTTTAAAGCGAGAAGAAAACAACAATGTTAATTGTTTTATTATAATtctagtggtgttagatgttttGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAA
>XM_036963611.1
AGATGGTACATACTGTTGGTGCTGCTCTAACTGCTCTGTCATTGATTCAGTAGTAACACAGTCGTCAGTccacagcctgcctgcctgcagagagagagccaaaacaggaagagagaaagagaggacacaaggagagaagaaaagagagtgattgtgagagagagaagcagggaaagCGTCCAGCCATCTTTCTGTCTCCAGTCTGAAAGCCACAGACGCCCTCTTTGTTTGGCGTCCCTGATATGACCCTGTTCAAAAGTGAGCACCACCGCAGCCCACGATACATTAGCATGAGTGGAGAGCTGAAGTCCAGCCGTTCCAGGACCAGCAGCAAGAGACCCAGCAGCAATCCATACGGatctGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGTGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGCACAGACGCAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGAGAATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACTCTGATAAAGACACAGATTGACGGGCTGCTTGACAACCTGGACAGGATGGACACACAGAGGCAGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGCCTGGCCGGGTCACCGTACTCCCCCTCCGCCAGCAGTGGTGAGCGCTCACCCTCCCCCCTGTCCCCCCCACGCCGCTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCCCACGatgAATAACCACAGCTCTGACCCTGAGGACGAGATGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTCGTCAAGAAGTTGCCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCTAACCAACCAGTTACATTTTATTCTACATCCACATATACATCAAACAGAaatacactactacacactactacacacaccacttTGTGTTCAGAGTTAGCCTCTTTAGGTTCTAAATCatctattcctcctctctctgtctggtaaCGGCAGATATTGTATGTGTGAacagcacacacatacagacacacaggcacacacacacacacacacactgtaattacAGTTTATCAGAAATCAACTCCATGTATCTCCCTTGGCTATTCCCCACTGAGATcagctcaccacacacacacacacacacacacacacacacacacacacacacattttatctGTAGAGTGTAATTATTAACCAGAACAGGAAGGTGAAATCATTTCCATATTTATAATTTTCTTACGCTCTTTTTAGCACGTCTTCATATTTTCCTGAAAAACATTCTGATTACAAATCCGTATAAATTTTACCTGCATATTGAGAGACTGGGTTTTTTGAAATGAGCATACTATAGATGTCACAATCATAGTTTTTCAGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTACCAGAGCATGAGTTCATCAGTTTATACTTGTCCATCAGTTAAAATCCCCCGTATGTCTGTGTAATGTTATCTCCCTGCTGTACCTGCCTGTATTAGGTACGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCAGCCCGGTCCATGTGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCATCATTTTGTTTTagggttttttatttgttaatgtTTTTTAAAGCGAGAAGAAAACAACAATGTTAATTGTTTTATTATAATtctagtggtgttagatgttttGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAA
>XM_036963612.1
aggtatttatgactgtcataaacctaaccccaggccaacgtcatgacaatgtTAAATAGGGATAGCTGGAAACATAGATGTCTTCCATTTCACATGAAAGGCCTACCGGTATTTAGAATAATAGAAGCCTTTCTGCAAATTGATCAGACCTCGAGCTAAATCATAAAACACAGCTGGGGAAGAGCGTGATGAGATGTACATGTTGACACTTATTACAGATTATTTGAAGATGGCAGAATATGGAGCTCAGAAAATCCAACTGTCTTCAGACGAGGGGAGAAAACCAGAAACAGTTTGGCTGCGGGTAGCTGGAGGAGAATTCATTAGGAATTCACACACACCTcagTCAACAGCATGATTACAGCACTGAGACTCACCAGCCCCCTGCAGAGACAGATAGGACAGAGGGactttagatctGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGTGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGCACAGACGCAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGAGAATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACTCTGATAAAGACACAGATTGACGGGCTGCTTGACAACCTGGACAGGATGGACACACAGAGGCAGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGCCTGGCCGGGTCACCGTACTCCCCCTCCGCCAGCAGTGGTGAGCGCTCACCCTCCCCCCTGTCCCCCCCACGCCGCTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCCCACGGTAACTGGCttgatgtctgtgtgtggagaatCTCTGAATatgAATAACCACAGCTCTGACCCTGAGGACGAGATGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTCGTCAAGAAGTTGCCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCTAACCAACCAGTTACATTTTATTCTACATCCACATATACATCAAACAGAaatacactactacacactactacacacaccacttTGTGTTCAGAGTTAGCCTCTTTAGGTTCTAAATCatctattcctcctctctctgtctggtaaCGGCAGATATTGTATGTGTGAacagcacacacatacagacacacaggcacacacacacacacacacactgtaattacAGTTTATCAGAAATCAACTCCATGTATCTCCCTTGGCTATTCCCCACTGAGATcagctcaccacacacacacacacacacacacacacacacacacacacacacattttatctGTAGAGTGTAATTATTAACCAGAACAGGAAGGTGAAATCATTTCCATATTTATAATTTTCTTACGCTCTTTTTAGCACGTCTTCATATTTTCCTGAAAAACATTCTGATTACAAATCCGTATAAATTTTACCTGCATATTGAGAGACTGGGTTTTTTGAAATGAGCATACTATAGATGTCACAATCATAGTTTTTCAGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTACCAGAGCATGAGTTCATCAGTTTATACTTGTCCATCAGTTAAAATCCCCCGTATGTCTGTGTAATGTTATCTCCCTGCTGTACCTGCCTGTATTAGGTACGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCAGCCCGGTCCATGTGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCATCATTTTGTTTTagggttttttatttgttaatgtTTTTTAAAGCGAGAAGAAAACAACAATGTTAATTGTTTTATTATAATtctagtggtgttagatgttttGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAA

Function

NR:

description
RNA-binding Raly-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963610.1 False 2035 mRNA 0.47 7 29467564 29536864
XM_036963611.1 False 1993 mRNA 0.47 7 29467567 29536864
XM_036963612.1 True 2090 mRNA 0.45 7 29522536 29536864
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506591 LOC106562265 coding upstream 39274 29403452 ~ 29428290 (+)
trnar-acg-113 NA coding upstream 136652 29330840 ~ 29330912 (+)
trnar-acg-112 NA coding upstream 137213 29330279 ~ 29330351 (+)
trnar-acg-111 NA coding upstream 138822 29328670 ~ 29328742 (+)
LOC118944409 NA coding upstream 148012 29313261 ~ 29319777 (+)
uraha LOC106562276 coding downstream 1120 29537984 ~ 29540755 (+)
LOC110506595 pdcd5 coding downstream 4021 29540885 ~ 29551185 (+)
LOC110506596 LOC106562275 coding downstream 14675 29551539 ~ 29555425 (+)
p22-phox p22-phox coding downstream 23211 29560075 ~ 29562083 (+)
tcf25 LOC106587382 coding downstream 26168 29563032 ~ 29598130 (+)
G2017680 NA non-coding upstream 5789 29461544 ~ 29461775 (+)
G2017679 NA non-coding upstream 6564 29460799 ~ 29461000 (+)
G2017676 NA non-coding upstream 9713 29457649 ~ 29457851 (+)
G2017675 NA non-coding upstream 10111 29457147 ~ 29457453 (+)
G2017668 NA non-coding upstream 26937 29440380 ~ 29440627 (+)
LOC110506606 LOC106562262 non-coding downstream 210421 29736045 ~ 29748130 (+)
LOC110506607 NA non-coding downstream 219001 29755256 ~ 29774051 (+)
G2018695 NA non-coding downstream 278171 29815035 ~ 29815261 (+)
G2018737 NA non-coding downstream 306602 29843466 ~ 29843665 (+)
G2018752 NA non-coding downstream 323036 29859900 ~ 29860209 (+)
LOC110506235 LOC106587398 other upstream 419732 29038558 ~ 29047832 (+)
LOC110506577 LOC106562242 other upstream 518488 28945317 ~ 28952574 (+)
cog4 cog4 other upstream 747013 28712737 ~ 28725956 (+)
G2017100 cgnl1 other upstream 1213112 28251849 ~ 28254452 (+)
G2015527 NA other upstream 2822669 26644348 ~ 26644895 (+)
G2018721 NA other downstream 297312 29834176 ~ 29834558 (+)
G2018959 NA other downstream 681735 30218599 ~ 30219119 (+)
G2019067 NA other downstream 860976 30397840 ~ 30398218 (+)
G2019479 NA other downstream 980303 30517167 ~ 30518593 (+)
G2019478 NA other downstream 987771 30524635 ~ 30528408 (+)

Expression

LOC110506592(LOC106587383) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110506592(LOC106587383) Expression in each Bioproject

Bar chart with 21 bars.
LOC110506592(LOC106587383) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network