LOC110506612 (LOC106587369)


Basic Information

Item Value
gene id LOC110506612
gene name LOC106587369
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 29993772 ~ 29996508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586357.2
TTTTGCCTGTTTcacagcggtgtgtgtgtgtgtagtatagtaCCGGTGCAAACCACCAGAGAAGCCAAGCAGCGTTCATTTGTAGTAGGATATAACGTTACCGTCGTGACCAACATACAACATTAATGCACTGTAACATTCACGAAAAGTGACCTTTATGTAGGTAGCTAGTTATAAGAGACTCGATTACCGTAGTCAACCTGGCAGagctgtcactgtctctctgttgtaTCGGGTATGATATCCGTTGGCTAGTTGTCAAGCTAGCAGTCTCCAGACCATCCTTATACAATTAGCTAGTTTAGTGTTTATCTCGAAATAAGAATGAGTATTAAATTGACAACTCAGGCTTATTGCAAGATGCTTTTGCATGCTGCTAAATATCCTCATTGCGCCGTGaacggattactggttgctgagaaacagaaggagaagaaAAAAGACAGCCACTCCACTCCAATCCTCTGTGTGGATTGTATACCACTATTCCACGGCACACTTGCATTGGCACCTATGCTGGAAGTGGCACTTACATTGATTGACACGTGGTGTAAAGAGAATAAATATGTCATAGCTGGGTATTACCAAGCCAACGAGCGCACAAAGGACTTCAGACCTAACCAGTTTGCTGAAAAAGTTGGGGCCAGGATTGCAGAGAACTTCAGCGAAGCAGCAATGATTATGGTGGACAGCACCAGATTCACCATGGGCTGCTATGAGCCCATATTAACCATCTATGACCACCATGAAAACAAGTGGAAATGCAGGGACTGTAATGCagACTGCTTTGAGGACTGGTGTGAGGCTCAGAAGATCACGTCGGCTCTGCTGGAAGGCAGGTCCTACGAGAGCCTGATCGACTTCGACAATCACCTAGACGACCTCAGGAATGACTGGACCAACCCTGAGATCAACAAGTCTGTGCTGCACCTGTGCTAAGCCTCCAAGTCGAGTGACTGCACTGCACTAGACAAAGGCATTGCGGCCAAAACGGCGTTGGACGTGCTAATACTACTGTAGCGCAGGAATGCTAAGTCTTTGTTCCTAGTGAATTGCTCTCACAGGGAAGAGAGCTTTCGGAGCACTGGCCAGTCTATTTTTATGGGCAAACAGGACACAGGTACCATTGGGATCTTTGATCCCGTAGTAGGGAGGATCAAGACCTTGGTGTCATTCAATGCAACGTGTTAATTTTCTTTCTCATGGTTTTTGTATGCTAATAATTAATGAAGATGTATGTGTAATTCTGAATGGTAGGGAATCATGAATATCATTTATTTTGACTTATTGAATACTTTAGGTTCTTCAGAAATAGTGTTACAGAGATGATAGACATAAATTATTGTTCTGAGATGTGACTTATTGAAATATTACAGAATTGTAATCAACGAGATATGTTGTTTTATTTCACTACCTATTAAGTCTTAATGTTTATATTCTCAGAGAACTGTTTTCCTCCTGTTTTTCTTATAAGAGATAGCTTAGTATTTATTTGTTAAAAGATGATCTGATTCTTTACTTTAATTGCTGAAATAAATTATGTTATTGGATAGGTAATAAACTGTAAGTCACTCGGGA

Function

NR:

description
ER membrane protein complex subunit 8-like

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586357.2 True 1578 mRNA 0.42 5 29993772 29996508

Neighbor

gene id symbol gene type direction distance location
LOC110506610 LOC107388308 coding upstream 3253 29989755 ~ 29990519 (+)
LOC110506607 NA coding upstream 219721 29755256 ~ 29774051 (+)
LOC110506606 LOC106562262 coding upstream 245642 29736045 ~ 29748130 (+)
LOC110506604 LOC106562279 coding upstream 257995 29718524 ~ 29735777 (+)
trnav-cac-86 NA coding upstream 290588 29703112 ~ 29703184 (+)
LOC110506613 psf2 coding downstream 4545 30001053 ~ 30004097 (+)
LOC110506615 LOC106587442 coding downstream 482047 30478555 ~ 30481821 (+)
LOC110506620 cmc2 coding downstream 555001 30551509 ~ 30556040 (+)
LOC100136122 LOC100169858 coding downstream 1818133 31814641 ~ 31822927 (+)
LOC110506638 LOC106562311 coding downstream 2083407 32079915 ~ 32087772 (+)
G2018798 LOC106587370 non-coding upstream 13088 29978984 ~ 29980684 (+)
G2018821 NA non-coding upstream 42386 29950536 ~ 29951386 (+)
G2018816 NA non-coding upstream 47966 29945549 ~ 29945806 (+)
G2018810 NA non-coding upstream 54096 29939141 ~ 29939676 (+)
G2018807 NA non-coding upstream 57509 29936060 ~ 29936263 (+)
G2018883 NA non-coding downstream 91836 30088344 ~ 30089506 (+)
G2018897 NA non-coding downstream 106866 30103374 ~ 30104646 (+)
G2018933 NA non-coding downstream 182977 30179485 ~ 30179836 (+)
G2018934 NA non-coding downstream 183509 30180017 ~ 30180230 (+)
G2018935 NA non-coding downstream 185215 30181723 ~ 30181958 (+)
G2018721 NA other upstream 159214 29834176 ~ 29834558 (+)
LOC110506235 LOC106587398 other upstream 945940 29038558 ~ 29047832 (+)
LOC110506577 LOC106562242 other upstream 1044696 28945317 ~ 28952574 (+)
cog4 cog4 other upstream 1273221 28712737 ~ 28725956 (+)
G2017100 cgnl1 other upstream 1739320 28251849 ~ 28254452 (+)
G2018959 NA other downstream 222091 30218599 ~ 30219119 (+)
G2019067 NA other downstream 401332 30397840 ~ 30398218 (+)
G2019479 NA other downstream 520659 30517167 ~ 30518593 (+)
G2019478 NA other downstream 528127 30524635 ~ 30528408 (+)
G2019882 NA other downstream 896770 30893278 ~ 30936313 (+)

Expression

LOC110506612(LOC106587369) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110506612(LOC106587369) Expression in each Bioproject

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LOC110506612(LOC106587369) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network