Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110506664 |
| gene name | sdhaf2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 32823041 ~ 32825749 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sdhaf2 | Predicted to be involved in aerobic respiration; mitochondrial respiratory chain complex II assembly; and protein-FAD linkage. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SDHAF2 (succinate dehydrogenase complex assembly factor 2). |
| description |
|---|
| succinate dehydrogenase assembly factor 2, mitochondrial-like |
| id | description |
|---|---|
| K18168 | SDHAF2, SDH5; succinate dehydrogenase assembly factor 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021586455.2 | True | 1359 | mRNA | 0.44 | 4 | 32823041 | 32825749 |
32,820,000
32,821,000
32,822,000
32,823,000
32,824,000
32,825,000
32,826,000
32,827,000
32,828,000
32,829,000
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506653 | LOC106563521 | coding | downstream | 237402 | 32528233 ~ 32585639 (-) |
| LOC110506651 | LOC106587483 | coding | downstream | 390580 | 32405119 ~ 32432461 (-) |
| LOC110506648 | LOC106563524 | coding | downstream | 485736 | 32323127 ~ 32337305 (-) |
| LOC110506647 | LOC106563526 | coding | downstream | 504324 | 32309014 ~ 32318717 (-) |
| LOC110506643 | LOC106563531 | coding | downstream | 604640 | 32214755 ~ 32218401 (-) |
| LOC110506665 | polr2l | coding | upstream | 4093 | 32829426 ~ 32831115 (-) |
| LOC110506670 | LOC106587508 | coding | upstream | 74812 | 32900561 ~ 32926267 (-) |
| nucb2a | LOC106562318 | coding | upstream | 333593 | 33159342 ~ 33168228 (-) |
| LOC118944422 | NA | coding | upstream | 561103 | 33386852 ~ 33388945 (-) |
| LOC100136595 | calc1 | coding | upstream | 975585 | 33800216 ~ 33815643 (-) |
| G2022016 | LOC106587514 | non-coding | downstream | 13069 | 32809410 ~ 32809972 (-) |
| G2022015 | NA | non-coding | downstream | 13893 | 32808935 ~ 32809148 (-) |
| G2022014 | LOC106587514 | non-coding | downstream | 14596 | 32808137 ~ 32808445 (-) |
| G2022008 | NA | non-coding | downstream | 25831 | 32796943 ~ 32797210 (-) |
| G2021937 | LOC100136564 | non-coding | downstream | 125808 | 32667607 ~ 32697233 (-) |
| G2022053 | NA | non-coding | upstream | 68133 | 32893882 ~ 32894387 (-) |
| G2022062 | NA | non-coding | upstream | 101566 | 32927315 ~ 32927655 (-) |
| G2022071 | NA | non-coding | upstream | 113658 | 32939407 ~ 32939632 (-) |
| G2022091 | NA | non-coding | upstream | 135387 | 32961136 ~ 32961394 (-) |
| G2021979 | NA | other | downstream | 4061 | 32810623 ~ 32818980 (-) |
| G2021956 | NA | other | downstream | 106128 | 32716126 ~ 32716913 (-) |
| G2021837 | NA | other | downstream | 293172 | 32523537 ~ 32529869 (-) |
| G2021464 | LOC106572245 | other | downstream | 534485 | 32288194 ~ 32288556 (-) |
| G2021975 | NA | other | upstream | 5878 | 32831627 ~ 32834481 (-) |
| G2022042 | LOC106562320 | other | upstream | 49506 | 32875255 ~ 32878771 (-) |
| LOC110506691 | LOC106562361 | other | upstream | 1675104 | 34499589 ~ 34523950 (-) |
| G2024673 | NA | other | upstream | 2050673 | 34876422 ~ 34928381 (-) |
