LOC110506665 (polr2l)


Basic Information

Item Value
gene id LOC110506665
gene name polr2l
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 32829426 ~ 32831115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586456.2
CAGTATTGAGGGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGTGAGTCGATAACTACTTTATTGTTTGAGTCTCTATTTAGCCATGATATAAAACACATTGGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAACTCA
>XM_036963163.1
ATGAATGAGGCGCAGCGCATTCAATCAAACCTTTCTAGAACCCCCTGTAACGTTGCAGTCCCTGAACATGCCCCAGTATTGAGGGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAACTCA
>TU2312674
GGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAACTCATTTTAACAGCCTTTTTTAATCAGTTCAAATTTGATACAAAagaagggggaagaggggaaaaaaaacactgCACAATTCaacatacaaaaaaaatgtacctCTGCTTTGTGCATGTCGGTGTGGCAAACAACAAAAGTTGCAGCCACGACCCTGAAACCGTCAATTTATAATcaaaaaataaaatgacaaaGACAGGAACACTGAGAAAGAGGGGGTTGGTGATGGCTGAGATCAGAAgattatgataaggtaaaatgcTTGGTGGCTGCTGAGTACCAGGGAAATGTGAACGGGGGACTATGGACATTCATTTTGTCTCACCATCAGTTCATCCATTATCCCAGACTTTTAAGCAGCTTGGTTCAGAAATAAAGTCCTGCCTCCCCTCCTACTCAGCCTGACGGAGACAAAGACCG
>TU2312673
GGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAAC
>TU2312675
GGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGTGAGTCGATAACTACTTTATTGTTTGAGTCTCTATTTAGCCATGATATAAAACACATTGGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAAC

Function

symbol description
polr2l Predicted to enable zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in tRNA transcription by RNA polymerase III; transcription by RNA polymerase I; and transcription by RNA polymerase II. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2L (RNA polymerase II, I and III subunit L).

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586456.2 False 647 mRNA 0.44 3 32829842 32831042
XM_036963163.1 False 660 mRNA 0.46 3 32829842 32831115
TU2312674 False 993 lncRNA 0.44 3 32829426 32831032
TU2312673 False 574 lncRNA 0.46 3 32829845 32831032
TU2312675 True 634 lncRNA 0.44 3 32829845 32831032
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506664 sdhaf2 coding downstream 4093 32823041 ~ 32825749 (-)
LOC110506653 LOC106563521 coding downstream 244203 32528233 ~ 32585639 (-)
LOC110506651 LOC106587483 coding downstream 397381 32405119 ~ 32432461 (-)
LOC110506648 LOC106563524 coding downstream 492537 32323127 ~ 32337305 (-)
LOC110506647 LOC106563526 coding downstream 511125 32309014 ~ 32318717 (-)
LOC110506670 LOC106587508 coding upstream 69446 32900561 ~ 32926267 (-)
nucb2a LOC106562318 coding upstream 328227 33159342 ~ 33168228 (-)
LOC118944422 NA coding upstream 555737 33386852 ~ 33388945 (-)
LOC100136595 calc1 coding upstream 970219 33800216 ~ 33815643 (-)
LOC110506676 pde3b coding upstream 1014895 33846010 ~ 33927989 (-)
G2022016 LOC106587514 non-coding downstream 19870 32809410 ~ 32809972 (-)
G2022015 NA non-coding downstream 20694 32808935 ~ 32809148 (-)
G2022014 LOC106587514 non-coding downstream 21397 32808137 ~ 32808445 (-)
G2022008 NA non-coding downstream 32632 32796943 ~ 32797210 (-)
G2021937 LOC100136564 non-coding downstream 132609 32667607 ~ 32697233 (-)
G2022053 NA non-coding upstream 62767 32893882 ~ 32894387 (-)
G2022062 NA non-coding upstream 96200 32927315 ~ 32927655 (-)
G2022071 NA non-coding upstream 108292 32939407 ~ 32939632 (-)
G2022091 NA non-coding upstream 130021 32961136 ~ 32961394 (-)
G2022109 NA non-coding upstream 149786 32980901 ~ 32981243 (-)
G2021979 NA other downstream 10862 32810623 ~ 32818980 (-)
G2021956 NA other downstream 112929 32716126 ~ 32716913 (-)
G2021837 NA other downstream 299973 32523537 ~ 32529869 (-)
G2021464 LOC106572245 other downstream 541286 32288194 ~ 32288556 (-)
G2021975 NA other upstream 512 32831627 ~ 32834481 (-)
G2022042 LOC106562320 other upstream 44140 32875255 ~ 32878771 (-)
LOC110506691 LOC106562361 other upstream 1669738 34499589 ~ 34523950 (-)
G2024673 NA other upstream 2045307 34876422 ~ 34928381 (-)

Expression

LOC110506665(polr2l) Expression in all Baseline Samples

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LOC110506665(polr2l) Expression in each Bioproject

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LOC110506665(polr2l) Expression in each Sample
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Co-expression Network