LOC110506670 (LOC106587508)


Basic Information

Item Value
gene id LOC110506670
gene name LOC106587508
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 32900561 ~ 32926267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586461.2
CAACATAATCACTCCGGAGATGTCTTGACTTAAAGTCCACACAGCTCTAGTGTATATCGGGGAGATCTGGGTTGCATCTTCTGAAGAAAGACGCATTTTTGTTACTCCTCTAAACCTTAAGGGGAGTTTTTAGCTTTTGGTCAGCGAGTGGTTCCTGGAAAACATCTGAATCGTTTTATAACCAAACACAGCTGCCGcgccagtgtatgtgtgtgtgcgtgacagtgtgtatgtgtgtgttcatccgtatgtggaagagggagagagagtgagggtatcTGTTTGCTTCCTTTTCCAAAacggaaagaaagaaaaaagtttGGTCGTCTTTTTCTCCCAGTAACTTTTTTTAGGCATGAACGCCGAGACGTGCGTCTCATACTGCGATATGACATCCATGGATTCATATTATAGCCCCTCTGCACCGCAAGGTAGGGATCATCCGACGAACCCGTTTAGGACATTCCAAGTAAGTGACACCAAATACAGCCCCACTTTCCTGCCAAACAAAGGTCAGGCTTACGGAGAAAAGTCTCGGAGCCCATTCCAACAGGAGTGTCAGTCATTGGATGCCACCGCTGGAGAAGGCACCTTTAACAAATACCACCTCTTCATGCAGAGGTCTTCTTGCAAAACCCCCCCCGAAGGAGGCAAACTGCACCAAGAAAGTGGACACAACGGAGCGCTCATTCCCTGCTATGgTAAAGACAGCTCAGGACTGACAGACTCTGACCTGACCCCGAACTCTGACCCCTCTGGGATGGACGGCAGCTACCTTAGTGTGAAGGATCAAGGCGTGAAGGGCCCCTCGGACCGACCAGGCTCGGACATGGCCGGCCCCATGGACAAGGGCGAGGGTGAGAGCAACAAGGGCAAGAAGAGGCGTAACCGCACCACCTTCACCAGCTACCAACTGGAGGAGCTGGAGAAGGTCTTCCAGAAGACCCACTACCCAGATGTGTACGCCCGCGAGCAGCTGGCCCTCCGGACTGACCTGACCGAGGCCCGGGTACAGGTGTGGTTCCAGAATCGCCGAGCCAAATGGAGGAAGAGGGAGCGCTTTGGTCAGATGCAGCAGGTCAGGACACACTTCTCCACGGCGTACGAGCTGCCTCTTCTAGCCAGACCTGAGAACTATGCACagATACAGAACCCATCATGGATTGGTGGCGGCAGCGGAGCGTCTCCTGTACCAGGCTGTGTAGTGCCCTGTGACTCAGTCACATCCTGTATGACCCCTCACCCTCACTCCGGCAGCGGCGTATCTGACTTCCTGGGCGTCCCGAACCCTGGGGGTCACATGGGACAGACACACATGGGCAGCCTGTTTGGGGGTCCTGGCATGGGGCCAGGGATCAACGGGTACGATCTGAACAGCATGGACCCAGACCGCAAGTCCTCCAGCATCGCCGCCTTGCGTATGAAGGCCAAGGAGCACAGTGCAGCCATCTCCTGGGCAACATGATGCCTCAACAGCAGCAGGACAGGGGCCTCTGGGAACCCCACCACGTCCAATCCAAGCCAAAGCAGAGAGGGGGGCCAGTCTGTGCTACTATAACAGAAATATTGATAATCTAAAATTATAATGATGATAAAAGCCATAGCAAATTgctgaagaggagagaaaagagacaaaTCTGGACAGTGCACTTCTTTATTTTGTGTCTCTGATGGGAGAGACCAGTGGACATCAGAGATGAACaacagtcattcagtcagtcagtcaggtagttAAAGCATGAGGTGAGAGGCAGGAAATCAAGAATCAGACCTATCCTTAAAGAGACAAATGAATTGGTTGCTTGTTGGAAACAATGTgctggttatacagtagctataaaccataacacaacaaaaataacaaaaaaagccGAATAGATTTGAACCAATCCCTGCACTTAttcagttaatacaggtaatgctGTTTGTACAGATATTGAGATGCGTCTGCTAACACACCTGCTAGTGAGAGTCAACAAAGCTTTTTCTGTTCAGGTGTTATTATACTTTCTTGTTTTCCGGTATTTAAATTTGAAGTGTGTATTTCTTTATTCATTTTGATCCTGGTTTTGTCCCAGAATCCCTTGTCCCTTTCTGTCAGACTGTGTGCAACTATTCTCTCCACATAAACTGCAAACTGATATTCACATATTTACGTACATTCGGCCTGATTTGGGTCTGTGTGTACATTTGGGTTTCCTAAGGTCATTTTGGTCAGCTTCACTTCAAGGAGAGGGGTGTAGGTAACGGTCAAGCCCATAGCCGATCCATCTCCGTCAGACTAACTGAAAGAATGCTGATAAAATCAGTCATATACTTCAGTTTTGGAAAGAGGTAAACCATTTCAAAGGTAGCTTACTGTTTCTGGTATGCATGGTCAGCACCAGCATAGTTTAGGTTGGTGCTACCTTCCAACACTTAAATGTCAGATATAAATCCAGGTTTGTTTAAGTGCGGGCAGACAGAGAGCCCTACTTGCACCGCTGATGAGCCATCACTGAGCCAGAGAGGGACGGGGACGAGGAagtggtgtgtgtgggtatgAGAGAGGTGCACAGCAGGCCTGCTGGGGGCTACAGGGTCTGGGAGCACCAGACAGGCTCAGCTCTGTTTGCAGGAGGAGATTCAAAGTGGACATGCCATTTCCTCCCTTGGCATTTCCTCACCTCACATTTCCACCTAGGGAGTTACAGGAAAAGTGCCCTCCAGTCCCATTGCCAGAAATAACACCCAGCGGCAGCCTTGAACAGCAGAGAGGCAGTGTAGATTATATAGACAGTTTTTGAGGGAGGATAATAAAATGGTGACTAATGCCGTCAATGTTGACCACTATCTCTTTTCATGCAAAGCCTCACTATAGTGGGATGGAATTGTCAATGGAGAACCTTTGGTGCTTTTGTTAGACATATTACTTTCTCTCCACACAAAATAAGCCGTCAGTCAGTTTTATACTGGGAACCCCAGGTCTCTTTCCACTTGGAGAAGACTTGTGAAGTGAATCCCTGTGAAACAGTTTGTTGAGGCAGAGGAGGGCTGTGAATTGGCTGCAGGTCATGATGGACTTGGGGGAACGTGTACTGCACAACTTTATTCCATCTCTCACTCACTGTTTATTTTCCTCTTGGAGAGAGCCGTCAGTAGGCACTTAGCAGCTCCACTCTGTTCCAAAACCAATGTGCTCTTATGCATCTCTTAGTCCCAGATGCAATGTATGTATGGCCTTTCGCTGTTAGAGACACATGTAAGTTCAATGCTGAATTTCCTGACGGTGTGTAAAGAATGTGGAGAGGCTACGTCCCATGAGAGAGGTGTCAGAGTAGCAGGCTGTCATAAAGACTGGATAGCACTCTAGCAGAGCTCTGAAAGACCTTATTTCCATGTTTGCATCAACATGATCACTTTACCAATGACAGTAGAGGTATGTTGTTAGAAATTCCTCATTCTCCGCAGTCAGCTGTCCTCCTGACAGCTTTAGTATGACGACTTGAGTTGAGCAGGCTGAATTTTGAGCCTGGCTTCATTAACTCTTTGGCATGGGGTCTGAGCAGGACCATTTCAAGAAAAACCACCAGCATGCCAGGATGAGGATCCGATTACAGCCCCCCGGCAACAAACAGATTCCCCCCCCTCCTAGCCACCCCCCAGCAACAAACAGATTCCCCCCCCTCCTAGCCACCCCCCAGCAACAAACAGATCCCTCCCCCTATAGTCCCCCGTCCcatccctggcaacaaacagattCCCCTGTCCCACCCcttatagccccccccccccagggaacAACCGGATCCCCAGTCCCTGCACCTTAGTGTGGACATGGAACAATGTGGGGGGCAAACTGTATTCCGTGCTTTCAATGGCTCCATGTCACGATTCGCGGAGGTGACAGCAATAGTAGACGTGTTCCATCATCTTATGCATTATGAGCTTTCTGTTTTCCCAAAGGTTCCCATTTGGATCAAGTCAAAACAAAAGGTCTCATAGATTTGAAGCCAAATATGATACCCCATGCACCTTAAGCAGAGAATCCATTTCTAATTCTGTAACACAAGCCTCATTATTTCCCCTTTCACTCGGTAGCTCTGCTAGGATATTGTGGTATGTACGATCCAGGATGAACTGTCAGTATCTACACTAGGTAGCTCTGCTAGGATATTGTGGTATGTAAGATCCAGGATGACCTGTCAGCATCTACAGTAGGTAGCTCTGCTAGGATATTGTGGTATGTAAGATCCAGGATGAACTGTCAGCATCTACAAACAATGGGTCAGAAACCCTTTCCAAATGACGACTCAGATTGGATCCAGTTATACATGGCAGTTCAAGCCTAATGCATGAACATACTGCTGACAACACGGCTTGTCTCTGTGTTTGGAGGTGCTCTTCTGAGATTTGGAGATGGGGCCCCTGTGCTCTCATAGGCCGCTCTAAGGGGTTGCTGGGAGTGCGAACAGGCCACGGCGTTCCGGTGTTCTGGGAAAAGAACAGTGCACACAGCTGCGCTCAGGGGATAAATGCAAAACAAACATGCCTTGCACATGCTTCTCCTCAGCTGTCATGGCTCCATTTTCAAAGAAGCCCCCACACTGCACTAgggctctccctctcgctcctctAGCCGAATGCCTGCCCCTCCGGCACTACGGCCATACACAGCTGCACAGCCAGGCTGCAGCCTTTTTAATTAACACTGGGACATCTGTGGACAGGGATTCTTTCTGGGATTGtgtgacagaacagacagagccGCCAGTGGCCCTGTGCTTCAGGTTGGCCTATAGCTGTCTCTGACTAGGGCTTGTAGGGTTTACAGTGCTGGGTTGGGTGCTTCTCAGAGCTCAAACACACATGAAGCTCAGGTCGACACAGAGTTGATTTGTTTACCTTTTTCGACATGTTTTTGAAAACGTTTTAAGTTCTTTATTTATAGACATGTTCTGTTATCTGCAGTTCTCTATGAATTGAGAAGGACAAAACCGAAAGCTCAGTGTTAAAGACTGCAGAAACGTAGAAGCCCATATGAAGCCTTCTTGGATGAATCACAGGTTAATATGTAAATATTCTCTTTCTCATCTACCCTAATCGAGGCACAGCTTGCCTTAGGGCCTTAACTGATTAGATATGCAGAATTTAAGTAGTTGCGAAACAGCTTGTATATCAGCTAATCCTGTTGTAGCCTGCAGGGGTCCCAGTCTGTCCCTCGGTGATGATGTCACCTTTCACACCACCCCTATCATTTCTAATACTACTGAAGCAGGGCAATAAAAATAAGTAAATACTTATTATAATATAaaactgtgtgttgtgtgtgcatgtaaaaaaaacaatgttttaatgTAAATTGGACTGATTTACAGTAATTTACAAAGACCCTTGAAATGTTACTAATTTGATGTAAAGTATTGCTTTATCTTTGTGAGATACTTGTGGGTTGGTTTTTGAGTGATCCTTCTGAAGGGGGTGGGTGTTCTTGGTTTTTGAGTGATCCTTCTGAAGGGGGTGGGTGTTCTTGGTTTGAGTTTCCAAGTATTTTGAAAGGTTTTTGTGGCTTTAAGCTATATTGTACGCCTTTTTAATTAATGATGGTATACTTTTACTTGTGTTCATGTTCTCATATATACTTTGTGTGAGTTACTATAGTACAGTAAGTTATTGCACTTACATCATATTTTAGAAA

Function

NR:

description
homeobox protein aristaless-like 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09451 ALX4; homeobox protein aristaless-like 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586461.2 True 5677 mRNA 0.47 4 32900561 32926267
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506665 polr2l coding downstream 69446 32829426 ~ 32831115 (-)
LOC110506664 sdhaf2 coding downstream 74812 32823041 ~ 32825749 (-)
LOC110506653 LOC106563521 coding downstream 314922 32528233 ~ 32585639 (-)
LOC110506651 LOC106587483 coding downstream 468100 32405119 ~ 32432461 (-)
LOC110506648 LOC106563524 coding downstream 563256 32323127 ~ 32337305 (-)
nucb2a LOC106562318 coding upstream 233075 33159342 ~ 33168228 (-)
LOC118944422 NA coding upstream 460585 33386852 ~ 33388945 (-)
LOC100136595 calc1 coding upstream 875067 33800216 ~ 33815643 (-)
LOC110506676 pde3b coding upstream 919743 33846010 ~ 33927989 (-)
LOC110506684 LOC106587537 coding upstream 1188242 34109965 ~ 34118269 (-)
G2022053 NA non-coding downstream 6174 32893882 ~ 32894387 (-)
G2022016 LOC106587514 non-coding downstream 90589 32809410 ~ 32809972 (-)
G2022015 NA non-coding downstream 91413 32808935 ~ 32809148 (-)
G2022014 LOC106587514 non-coding downstream 92116 32808137 ~ 32808445 (-)
G2022062 NA non-coding upstream 1048 32927315 ~ 32927655 (-)
G2022071 NA non-coding upstream 13140 32939407 ~ 32939632 (-)
G2022091 NA non-coding upstream 34869 32961136 ~ 32961394 (-)
G2022109 NA non-coding upstream 54634 32980901 ~ 32981243 (-)
G2022110 NA non-coding upstream 55102 32981369 ~ 32981633 (-)
G2022042 LOC106562320 other downstream 21790 32875255 ~ 32878771 (-)
G2021975 NA other downstream 66080 32831627 ~ 32834481 (-)
G2021979 NA other downstream 81581 32810623 ~ 32818980 (-)
G2021956 NA other downstream 183648 32716126 ~ 32716913 (-)
LOC110506691 LOC106562361 other upstream 1574586 34499589 ~ 34523950 (-)
G2024673 NA other upstream 1950155 34876422 ~ 34928381 (-)
G2024949 NA other upstream 2469807 35396074 ~ 35399967 (-)
G2025061 NA other upstream 2569520 35495787 ~ 35497803 (-)

Expression

LOC110506670(LOC106587508) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110506670(LOC106587508) Expression in each Bioproject

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LOC110506670(LOC106587508) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
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Co-expression Network