nucb2a (LOC106562318)


Basic Information

Item Value
gene id nucb2a
gene name LOC106562318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 33159342 ~ 33168228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586463.2
TTTTATCCAATGGCAACTACCCAATTTAGCTGGCATGCCATGTTGTCAATGTAGGATTTCATTCACTTGCTATCTGACACTGTAAACAAACGCCTGCTGGCATCAAGGAGGGAACGAGGATAAATGATCAGCTCCGGAGGagactagttagctagctaaattagcttGACAGGGTTTCAACTAGATAGCACAGCCACAACGTACAAATTGGCTATAATGTAAAGATTAATGAAAACAGAATTGGTGTTAATGTAAGGTTAGGCGTACGGTTAGCCCTGTGGTTaaagttaggtttaaaatctaattttaagaagagacattttagaaataggcggggtttacgACTTTGTGACTGTAGTAACGACCGTTTTGACGGATTCCGATCAAAAAATGTCTTGGAGCCAGGTATTCCACACCAGCTGCCTTGTGCTTCTGGTACATCTGCTCTGCCTGGAGGCAGTGCCCATCAGTCTGGACAAGACCAAGGTGAACCAGCCGGAGGACAAAGCCTCAGAGCCACCACCAAGTGTGGACACTGGACTCCACTATGACCGTTATCTCAGGGAAGTCATTGATTTTCTGGAAAAAGACCAGCATTTCAGAGAGAAGCTCCATAACACTGATATGGAGGACATCAAGATGGGGAAGCTGGCCAAAGAGCTGGACTTTGTCAGCCACCATGTAAGGACACAACTGGACGAGCTAAAAAGGCAGGAGGTTAGCCGGCTACGGACACTGATCAAAGCCAAGCAAGACATTGAAGGAGGGAACGATATGGCAGTAGACCACCAAGCTCTGCTGAAACAGTTTGAGTACCTGAACCACATGAATCCTCACACCTTTGAAGTGGAGGATCTGGACAGACTCATCAAATCAGCCACAAACGATCTGGAGAACTATGACAAGGAGCGCCATGAGGAGTTCAAGAAGTACGAGATGACGAAAGACCATGAGCGAAGGGAACACCTCAAGACTCTAGACGATGaagggaggaagaaggaggaagaACATTACGAGGAGATGAAGAAGAAACATGCAGACCATCCCAAAGTCAACCATCCAGGCAGCCAGAATCAGTTCAAAGAGGTGTGGGAGGAAGCAGATGGTCTTGACCCTGAAGATTTTGACCCCAAGACCTTTTTCAAGCTGCATGATTCCAATGGAGATGGCTTCTTCGATGAGCAGGAATTGGAGGCATTGTTTACGAAGGAGCTGGAGAAGATCTATGATCCTACCAATGAAGAGGACGATAtggtggagatggaggaggagcgCCTGCGTATGAGAGAGCACGTCATGAACGAGGTGGACACCAACAAAGACAGACTGGTCTCCTTAGAAGAGTTCCTGATTGCCACAAAGAAGAAGGAATTCCTGGAACCAGATAGTTGGGAGACCTTAGAGCAGAACCAGGCCTACACAGACGAGGAGATGAGGGAGTTTGAGGAGCACCTGGCCCAGCAGGAAGAGGACCTCAACCAGAAAGCATCAGACCTCCAGAAACAGAGGGATGAGTTGGAGAGGCAACAGGAACAGCTCAACTCACAGAAAGTAGAGCTTCAGCAGGCAGTAGAACACATGGAACggttgaaaacccagaaagttgAGCCCCCTCCAGAGGTTCATGTAGAAGGGAATGCTATCCCAGAGCCACAAGGAGAGTACCATCCTTTGCCCCTGGGCCACCAAGATATGTCCCAAAACCACCCGGGTATGAAGCAAGACAACCACCTCCAGAACCAAATACCCCACAACACCCAGGATTTGTCCCAACCACGACTCCAAGATCTGCCCCCAGGCCATCAGGCAGTGCCATAGGGCCAACATTACTTACCATAAGGCCCCCATCAGAACCAGCCCACTCAACCCCAGCTGCCAGAtaaaactctatagacaacaCCTCTGGCTCCATGGCCTCCCACCCACAGACCTTTACAGTACTTATATACCTCCAGTCCAGTGTGCAGAGGTCCCTCCATATGGGCATGTGTACCCCGTTATCCTGAAAGAGTTAACTGAAAACCAGCTGGAGAACACAGGAGGCGTTTACAGTATCTCTGCCCACTTGTGGATTTCAATTTGAGCCTCCAAGGCCTAGAAATGTTTTATACGTTTGCAGTCAGGGAATTTGTGTTAGAGTGCATATATGGTATGTGATGTATGGATTGGTCATAATTGATCATTACTTAAAATGCAGAGCTTTGGTGGAATGGTTTTGGTAGTGTCAATGTCTATATATTTTGGAACATTGTTTTTAATTAGTGATGTCAGGTCACTTCACCTGAATAATGATAATGTTGTGAAATGTACGGATTCCTGAAAAGGCTCCATTTCAAAAGGCACTGAAAATGGCATTGGGAGCATTATGAACAGTAAAGACAACTGTCTCATGgaacagaatataatatacaAATCTT
>XM_021586464.2
ATTTTATCCAATGGCAACTACCCAATTTAGCTGGCATGCCATGTTGTCAATGTAGGATTTCATTCACTTGCTATCTGACACTGTAAACAAACGCCTGCTGGCATCAAGGAGGGAACGAGGATAAATGATCAGCTCCGGAGGagactagttagctagctaaattagcttGACAGGGTTTCAACTAGATAGCACAGCCACAACGTACAAATTGGCTATAATGTAAAGATTAATGAAAACAGAATTGGTGTTAATGTAAGGTTAGGCGTACGGTTAGCCCTGTGGTTaaagttaggtttaaaatctaattttaagaagagacattttagaaataggcggggtttacgACTTTGTGACTGTAGTAACGACCGTTTTGACGGATTCCGATCAAAAAATGTCTTGGAGCCAGGTATTCCACACCAGCTGCCTTGTGCTTCTGGTACATCTGCTCTGCCTGGAGGCAGTGCCCATCAGTCTGGACAAGACCAAGGTGAACCAGCCGGAGGACAAAGCCTCAGAGCCACCACCAAGTGTGGACACTGGACTCCACTATGACCGTTATCTCAGGGAAGTCATTGATTTTCTGGAAAAAGACCAGCATTTCAGAGAGAAGCTCCATAACACTGATATGGAGGACATCAAGATGGGGAAGCTGGCCAAAGAGCTGGACTTTGTCAGCCACCATGTAAGGACACAACTGGACGAGCTAAAAAGGCAGGAGGTTAGCCGGCTACGGACACTGATCAAAGCCAAGCAAGACATTGAAGGAGGGAACGATATGGCAGTAGACCACCAAGCTCTGCTGAAACAGTTTGAGTACCTGAACCACATGAATCCTCACACCTTTGAAGTGGAGGATCTGGACAGACTCATCAAATCAGCCACAAACGATCTGGAGAACTATGACAAGGAGCGCCATGAGGAGTTCAAGAAGTACGAGATGACGAAAGACCATGAGCGAAGGGAACACCTCAAGACTCTAGACGATGaagggaggaagaaggaggaagaACATTACGAGGAGATGAAGAAGAAACATGCAGACCATCCCAAAGTCAACCATCCAGGCAGCCAGAATCAGTTCAAAGAGGTGTGGGAGGAAGCAGATGGTCTTGACCCTGAAGATTTTGACCCCAAGACCTTTTTCAAGCTGCATGATTCCAATGGAGATGGCTTCTTCGATGAGCAGGAATTGGAGGCATTGTTTACGAAGGAGCTGGAGAAGATCTATGATCCTACCAATGAAGAGGACGATAtggtggagatggaggaggagcgCCTGCGTATGAGAGAGCACGTCATGAACGAGGTGGACACCAACAAAGACAGACTGGTCTCCTTAGAAGAGTTCCTGATTGCCACAAAGAAGAAGGAATTCCTGGAACCAGATAGTTGGGAGACCTTAGAGCAGAACCAGGCCTACACAGACGAGGAGATGAGGGAGTTTGAGGAGCACCTGGCCCAGCAGGAAGAGGACCTCAACCAGAAAGCATCAGACCTCCAGAAACAGAGGGATGAGTTGGAGAGGCAACAGGAACAGCTCAACTCACAGAAAGTAGAGCTTCAGCAGGCAGTAGAACACATGGAACggttgaaaacccagaaagttgAGCCCCCTCCAGAGGTTCATGAAGGGAATGCTATCCCAGAGCCACAAGGAGAGTACCATCCTTTGCCCCTGGGCCACCAAGATATGTCCCAAAACCACCCGGGTATGAAGCAAGACAACCACCTCCAGAACCAAATACCCCACAACACCCAGGATTTGTCCCAACCACGACTCCAAGATCTGCCCCCAGGCCATCAGGCAGTGCCATAGGGCCAACATTACTTACCATAAGGCCCCCATCAGAACCAGCCCACTCAACCCCAGCTGCCAGAtaaaactctatagacaacaCCTCTGGCTCCATGGCCTCCCACCCACAGACCTTTACAGTACTTATATACCTCCAGTCCAGTGTGCAGAGGTCCCTCCATATGGGCATGTGTACCCCGTTATCCTGAAAGAGTTAACTGAAAACCAGCTGGAGAACACAGGAGGCGTTTACAGTATCTCTGCCCACTTGTGGATTTCAATTTGAGCCTCCAAGGCCTAGAAATGTTTTATACGTTTGCAGTCAGGGAATTTGTGTTAGAGTGCATATATGGTATGTGATGTATGGATTGGTCATAATTGATCATTACTTAAAATGCAGAGCTTTGGTGGAATGGTTTTGGTAGTGTCAATGTCTATATATTTTGGAACATTGTTTTTAATTAGTGATGTCAGGTCACTTCACCTGAATAATGATAATGTTGTGAAATGTACGGATTCCTGAAAAGGCTCCATTTCAAAAGGCACTGAAAATGGCATTGGGAGCATTATGAACAGTAAAGACAACTGTCTCATGgaacagaatataatatacaAATCTT

Function

NR:

description
PREDICTED: nucleobindin-2-like isoform X2

GO: NA

KEGG:

id description
K20371 NUCB; nucleobindin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586463.2 False 2417 mRNA 0.47 13 33159342 33168227
XM_021586464.2 True 2415 mRNA 0.47 13 33159342 33168228
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506670 LOC106587508 coding downstream 233075 32900561 ~ 32926267 (-)
LOC110506665 polr2l coding downstream 328227 32829426 ~ 32831115 (-)
LOC110506664 sdhaf2 coding downstream 333593 32823041 ~ 32825749 (-)
LOC110506653 LOC106563521 coding downstream 573703 32528233 ~ 32585639 (-)
LOC110506651 LOC106587483 coding downstream 726881 32405119 ~ 32432461 (-)
LOC118944422 NA coding upstream 218624 33386852 ~ 33388945 (-)
LOC100136595 calc1 coding upstream 633106 33800216 ~ 33815643 (-)
LOC110506676 pde3b coding upstream 677782 33846010 ~ 33927989 (-)
LOC110506684 LOC106587537 coding upstream 946281 34109965 ~ 34118269 (-)
LOC110506685 rbtn1 coding upstream 984448 34152676 ~ 34184095 (-)
G2022150 NA non-coding downstream 16549 33142557 ~ 33142793 (-)
G2022141 NA non-coding downstream 24497 33134589 ~ 33134845 (-)
G2022140 NA non-coding downstream 50698 33108440 ~ 33108644 (-)
G2022139 NA non-coding downstream 79916 33079132 ~ 33079426 (-)
G2022133 NA non-coding downstream 102382 33056428 ~ 33056960 (-)
G2022722 NA non-coding upstream 1226 33169454 ~ 33169745 (-)
G2022726 NA non-coding upstream 5136 33173364 ~ 33173670 (-)
G2022728 LOC107586033 non-coding upstream 11505 33179733 ~ 33183283 (-)
G2022813 NA non-coding upstream 149682 33317910 ~ 33319072 (-)
G2022939 NA non-coding upstream 361139 33529367 ~ 33532946 (-)
G2022042 LOC106562320 other downstream 280571 32875255 ~ 32878771 (-)
G2021975 NA other downstream 324861 32831627 ~ 32834481 (-)
G2021979 NA other downstream 340362 32810623 ~ 32818980 (-)
G2021956 NA other downstream 442429 32716126 ~ 32716913 (-)
LOC110506691 LOC106562361 other upstream 1332625 34499589 ~ 34523950 (-)
G2024673 NA other upstream 1708194 34876422 ~ 34928381 (-)
G2024949 NA other upstream 2227846 35396074 ~ 35399967 (-)
G2025061 NA other upstream 2327559 35495787 ~ 35497803 (-)

Expression

nucb2a(LOC106562318) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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nucb2a(LOC106562318) Expression in each Bioproject

Bar chart with 21 bars.
nucb2a(LOC106562318) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network