Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118944577 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 33179871 ~ 33180002 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005039929.1 | True | 132 | mRNA | 0.41 | 1 | 33179871 | 33180002 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506114 | LOC106562317 | coding | upstream | 21216 | 33148817 ~ 33158655 (+) |
| LOC110506669 | ext2 | coding | upstream | 279399 | 32879217 ~ 32900472 (+) |
| LOC110506667 | LOC106562320 | coding | upstream | 301082 | 32836026 ~ 32878789 (+) |
| LOC110506663 | LOC106562322 | coding | upstream | 350027 | 32825663 ~ 32829844 (+) |
| LOC110506662 | LOC106587514 | coding | upstream | 360831 | 32702746 ~ 32819040 (+) |
| LOC118944571 | NA | coding | downstream | 1485 | 33181487 ~ 33181709 (+) |
| LOC118944584 | NA | coding | downstream | 2008 | 33182010 ~ 33182137 (+) |
| LOC110506673 | LOC106587517 | coding | downstream | 16131 | 33196133 ~ 33344864 (+) |
| LOC110506675 | sox6 | coding | downstream | 174726 | 33354728 ~ 33556537 (+) |
| LOC110506679 | LOC106587531 | coding | downstream | 632549 | 33812551 ~ 33845325 (+) |
| G2022153 | NA | non-coding | upstream | 34589 | 33144920 ~ 33145282 (+) |
| G2022147 | NA | non-coding | upstream | 39224 | 33140438 ~ 33140647 (+) |
| G2022142 | NA | non-coding | upstream | 40703 | 33136517 ~ 33139168 (+) |
| G2022136 | NA | non-coding | upstream | 104996 | 33074631 ~ 33074875 (+) |
| G2022135 | NA | non-coding | upstream | 118277 | 33061297 ~ 33061594 (+) |
| G2022161 | LOC106613263 | non-coding | downstream | 4644 | 33184646 ~ 33185118 (+) |
| G2022162 | NA | non-coding | downstream | 7283 | 33187285 ~ 33187585 (+) |
| G2022163 | NA | non-coding | downstream | 7655 | 33187657 ~ 33187896 (+) |
| G2022183 | NA | non-coding | downstream | 138807 | 33318809 ~ 33320032 (+) |
| G2022259 | NA | non-coding | downstream | 157505 | 33337507 ~ 33337851 (+) |
| LOC110506661 | LOC106563545 | other | upstream | 479735 | 32685823 ~ 32700136 (+) |
| G2021675 | NA | other | upstream | 517631 | 32661223 ~ 32662240 (+) |
| G2021178 | LOC106563531 | other | upstream | 963708 | 32214763 ~ 32216163 (+) |
| G2019882 | NA | other | upstream | 2243558 | 30893278 ~ 30936313 (+) |
| G2022626 | NA | other | downstream | 802715 | 33982717 ~ 33985845 (+) |
| tm2d3 | tm2d3 | other | downstream | 1711545 | 34891516 ~ 34896626 (+) |
| LOC110506714 | LOC106562344 | other | downstream | 1816217 | 34992692 ~ 35036017 (+) |
| G2024473 | LOC106562390 | other | downstream | 2367970 | 35547972 ~ 35548749 (+) |
| LOC110506728 | cnep1r1 | other | downstream | 2508131 | 35688053 ~ 35690950 (+) |
