LOC110506684 (LOC106587537)


Basic Information

Item Value
gene id LOC110506684
gene name LOC106587537
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34109965 ~ 34118269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471018.2
actagttaccacagccacagagTCAAAATGGACTATATcgttaaaaaaaaacgtattttgggGCTAAATTTAAGGTGAGGCAtaaagttagcagtgtggttggggttaggtttaaaatcagattgtaCGAATAACAATTGTAAAAATGGGCGGGGTGtagccataattatgactttgtggttgtggtaactagtgacgaccagaGGTTTAATGTACAGCCAAATATACTCCATTCTCTACTATCTCTGGTACAGTTTATCTGTGACAAAATGTCGATGACAACTATGTAGAAGGTTACTCTGATTTTCTGCTCTGTCCTCTGTGTTTTGTTTTTTCTTCCCTAAATAATTTTCCAGAGAGGGAAGAATGATGTAGGGCAGCCCGAGGTTGGTCCTGGGTATTATCCTCCCATGATGCATCGCCTACAGATGCCAGAGGAGTGCCTCGGACAGTGGATGGAGGGGACTCATGACTCTGGGCCCCACAGCCCTGAGGTCCTGGCTAAAGTCAAAGGCATGGGCACACTTCAGATCCGAGGAGCCACTAAATCCAATCTGATCAGCCAGGACATTCCCATCTACGGATTTGGAATCCTACTCCACATCTTCTTCATCATATTCTAGATAAGCTGCACAATGTCCACCCTAGACTGGCTCAGTTAAATGGATAGACAAACTATTTAGAGGCAGGAATGTAGATGATGTAGACTATTACAGTTTTTAACAGCATCCATGTAATACCTATACTAGCTAGGAGTCCAGTGCATCCAGTACATTAGAAGGTGTGCACACCATAAATGCATTGTTGTATTCACAGATGACAACTAGGCCTAAAGGAAAAAGTACTAAACTGGTATGCCGATTTCCTACAATGACATTTGAAGCttggcaggagaggaggaATGATGAGCTGGCCCAGCTTCAGGAGAAGCTGCTGGAGACAGAGGGTGAAGTAGAGGATCTTCTCCAGAAGGAGCAGCACTCCTAACAGCACGACTAGCAGCAAGGTTAGAAGAGCATCCAAGCAGGAGAAGTTACTGCGGAAGCTGAGTAAGATCAGTCGGGTGATGCAGGAGGTACGACTGATGGAGGGGGCCACACCTGAGATGGTGCCCTACGCTGCTGACTGAGAGggctacCATGAGGAGACCTACCcccagtatttttttatttatttacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacagatacaacaacacagagttacacatggagtaaaacaaacatacagtcaataataaagtataaacaattctata
>XR_005039791.1
actagttaccacagccacagagTCAAAATGGACTATATcgttaaaaaaaaacgtattttgggGCTAAATTTAAGGTGAGGCAtaaagttagcagtgtggttggggttaggtttaaaatcagattgtaCGAATAACAATTGTAAAAATGGGCGGGGTGtagccataattatgactttgtggttgtggtaactagtgacgaccagaGGTTTAATGTACAGCCAAATATACTCCATTCTCTACTATCTCTGGTACAGTTTATCTGTGACAAAATGTCGATGACAACTATGTAGAAGGTTACTCTGATTTTCTGCTCTGTCCTCTGTGTTTTGTTTTTTCTTCCCTAAATAATTTTCCAGAGAGGGAAGAATGATGTAGGGCAGCCCGAGGTTGGTCCTGGGTATTATCCTCCCATGATGCATCGCCTACAGATGCCAGAGGAGTGCCTCGGACAGTGGATGGAGGGGACTCATGACTCTGGGCCCCACAGCCCTGAGGTCCTGGCTAAAGTCAAAGGCATGGGCACACTTCAGATCCGAGGAGCCACTAAATCCAATCTGATCAGCCAGGACATTCCCATCTACGGATTTGGAATCCTACTCCACATCTTCTTCATCATATTCTAGATAAGCTGCACAATGTCCACCCTAGACTGGCTCAGTTAAATGGATAGACAAACTATTTAGAGGCAGGAATGTAGATGATGTAGACTATTACAGTTTTTAACAGCATCCATGTAATACCTATACTAGCTAGGAGTCCAGTGCATCCAGTACATTAGAAGGTGTGCACACCATAAATGCATTGTTGTATTCACAGATGACAACTAGGCCTAAAGGAAAAAGTACTAAACTGGTATGCCGATTTCCTACAATGACATTTGAAGCttggcaggagaggaggagtaagTAGACAGCATCACATCATTAATAGCTAGGCCATTGTGAATGACACAATGATGTATATGATGTGCCTTTTATCTCATAGCGCAGTTGATAACAGTCCCATGCACCtgacctccctaacacacaccaTTTAGGTCCTACATTCCGTGATGATTCACCCTGATGAAAGACTAATGCAGGATATAACACACCCTGCGAGGAGAAATGTCATCTGACAAATGAGCTCCTCTCTAACAGTCACCTCTTTCATGACTTTGAGGGCTTATTTTCAATCAACTTCCTCATTGTTTTGATCGTTCCATTTGTCAGGGCCCCTGCAGAATGTATCAGTAGCTCCAATTTAAGCAACTCCATGATAAGGTAGATTAGGATCCTGTCCAACTCACAGGGAGCTTTGTTCCCTGCCTTTGTTAGACCTGGATTAGCAATCAGAAGTAATGTTGTTTCAGCCCAGCAGTGTCTAATACCAATTACTGCATGTATTTTGGATCAGCACTAAGAGGTTTAGCTCCATTCATCAAATGAATGCTAAGGGGGTAGGGGTGGGGGACAATGTGACAGGGACATGCATATAAATCTATTCATGTCCTATGTATCAATGCCACTCTCACCTTCCGTAATTAAGAAACATTGAGTCACAATGGTTGATTCGTTTCCATTCCTGAGTATTGAACGTGTAGTTCTGAACGTGCAGAGTGAATGTTGAATCTCAAGGCTTTCTGCAACATTGGAAAGCAACTCTAGATACGGTGTGTGTTCGTCCATGCATGAGTTTGCTCTTTAAATCCCTGACTGCCATGTTTCCCTCCCAGCAGATGATGAGCTGGCCCAGCTTCAGGAGAAGCTGCTGGAGACAGAGGGTGAAGTAGAGGATCTTCTCCAGAAGGAGCAGCACTCCTAACAGCACGACTAGCAGCAAGGTTAGAAGAGCATCCAAGCAGGAGAAGTTACTGCGGAAGCTGAGTAAGATCAGTCGGGTGATGCAGGAGGTACGACTGATGGAGGGGGCCACACCTGAGATGGTGCCCTACGCTGCTGACTGAGAGggctacCATGAGGAGACCTACCcccagtatttttttatttatttacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacagatacaacaacacagagttacacatggagtaaaacaaacatacagtcaataataaagtataaacaattctata
>TU2314113
GTAAAATCAGGAAGGATGCTGGAGGGttgggtttccactagttaccacagccacagagTCAAAATGGACTATATcgttaaaaaaaaacgtattttgggGCTAAATTTAAGGTGAGGCAtaaagttagcagtgtggttggggttaggtttaaaatcagattgtaCGAATAACAATTGTAAAAATGGGCGGGGTGtagccataattatgactttgtggttgtggtaactagtgacgaccagaGGTTTAATGTACAGCCAAATATACTCCATTCTCTACTATCTCTGGTACAGTTTATCTGTGACAAAATGTCGATGACAACTATGTAGAAGGTTACTCTGATTTTCTGCTCTGTCCTCTGTGTTTTGTTTTTTCTTCCCTAAATAATTTTCCAGAGAGGGAAGAATGATGTAGGGCAGCCCGAGGTTGGTCCTGGGTATTATCCTCCCATGATGCATCGCCTACAGATGCCAGAGGAGTGCCTCGGACAGTGGATGGAGGGGACTCATGACTCTGGGCCCCACAGCCCTGAGGTCCTGGCTAAAGTCAAAGGCATGGGCACACTTCAGATCCGAGGAGCCACTAAATCCAATCTGATCAGCCAGGACATTCCCATCTACGGATTTGGAATCCTACTCCACATCTTCTTCATCATATTCTAGATAAGCTGCACAATGTCCACCCTAGACTGGCTCAGTTAAATGGATAGACAAACTATTTAGAGGCAGGAATGTAGATGATGTAGACTATTACAGTTTTTAACAGCATCCATGTAATACCTATACTAGCTAGGAGTCCAGTGCATCCAGTACATTAGAAGGTGTGCACACCATAAATGCATTGTTGTATTCACAGATGACAACTAGGCCTAAAGGAAAAAGTACTAAACTGGTATGCCGATTTCCTACAATGACATTTGAAGCttggcaggagaggaggaATGATGAGCTGGCCCAGCTTCAGGAGAAGCTGCTGGAGACAGAGGGTGAAGTAGAGGATCTTCTCCAGAAGGAGCAGCACTCCTAACAGCACGACTAGCAGCAAGGTTAGAAGAGCATCCAAGCAGGAGAAGTTACTGCGGAAGCTGAGTAAGATCAGTCGGGTGATGCAGGAGGTACGACTGATGGAGGGGGCCACACCTGAGATGGTGCCCTACGCTGCTGACTGAGAGggctacCATGAGGAGACCTACCcccagtatAAGGAGCCCGGAGGCAGGCGCAGCGGCAGTTCTCATCACCATCCTGGAGGAGCCTGCTGCTGACTCAGATACCCACTGCCGAGGCCCTGGCTGAGGAGGTAGAAGAGGacgcagaggaggaggaggagcagtagCTCTGCCCGCCCCCACCTCCTGAAGGAGGAATGGAAGAAACGGGTAGTAGTCCCACCAGAGTAAAAAAGCTAATCAGATTCAGCGACCACAAAGATGTGTTTCACTACCCTAAGCAGGATACAGTCTATGAATATAGGtatgaagaggagaaggaagagaggaggaagaggagcaagtggatgagacagaggaagaggaggaagaggagcaagtggatgagacagaggaagagggagtagTAGGTGATGAAGACCCACTGATGGAGGCCGAGTCTCTCAGTTTTAGTTGTGATGTCTGTAGTAATCCAGAAGCAGAAGAAGAGATGGAAGAAGAGTACATTCTACTGTCTCAGTCTGAAGAGACAGACATCTTCACCCCACCAGATAGGTCTGGGGAGCTGGGGATTGGGAGTTCTCTCAGGttgaggaacaggagagagagacagagggcagagTCAATGAGGAAACTAGTTCATCCTAAACTTGCCTCTCTAGCCCTTTGACCTTACTGAATGTTCTGAATATTCCCAAGAATGTACCTCTCCTTATGAAAATCCCCGTTTTCTATCCTGTCTCCTTGCGTCCCAAGACAGAATATGCTGTTCAGTGGGTGAATTTTGTGATCCTAACTAAACTACCTAATACCCTAATATTCATTCTGCTTTAAAGAAAACCATTTACCCACAATTCATCATGTCCTTTGATGGTAGACATCAAACTATCTGACTAACTTTATTCCAATATGGCAGTCAAGCATCGTAGAGACCCTGGTGTCCTCTGGGATAGAttgtaaacagagagagagcagggacccACATAAATGAGTAAACAGAGGTAGATCGTTCAAGTCCAGCTTTTGTATCTCAGACTATTAAAGTGGACACATTATATTAAAAGGTCAtatgaaaaatattttttcaaaCCAGCAACTATTAAGCCCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471018.2 False 1335 mRNA 0.44 5 34114509 34118233
XR_005039791.1 False 2151 mRNA 0.43 4 34114509 34118233
TU2314113 True 2275 lncRNA 0.46 6 34109965 34118269
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506676 pde3b coding downstream 186520 33846010 ~ 33927989 (-)
LOC100136595 calc1 coding downstream 298866 33800216 ~ 33815643 (-)
LOC118944422 NA coding downstream 725564 33386852 ~ 33388945 (-)
nucb2a LOC106562318 coding downstream 946281 33159342 ~ 33168228 (-)
LOC110506670 LOC106587508 coding downstream 1188242 32900561 ~ 32926267 (-)
LOC110506685 rbtn1 coding upstream 34443 34152676 ~ 34184095 (-)
LOC110506117 LOC106587539 coding upstream 235540 34353773 ~ 34358034 (-)
LOC110506686 LOC106562363 coding upstream 257953 34376186 ~ 34390655 (-)
LOC110506687 LOC106562362 coding upstream 271416 34389577 ~ 34417992 (-)
LOC110506688 st5 coding upstream 299968 34418201 ~ 34492100 (-)
G2023221 NA non-coding downstream 49999 34051298 ~ 34064510 (-)
G2023172 NA non-coding downstream 123857 33977638 ~ 33990652 (-)
G2023085 NA non-coding downstream 173089 33940525 ~ 33941420 (-)
G2023086 copb non-coding downstream 174797 33937830 ~ 33939712 (-)
G2023088 LOC106587500 non-coding downstream 177635 33936526 ~ 33936874 (-)
G2023273 NA non-coding upstream 10075 34128308 ~ 34128582 (-)
G2023280 NA non-coding upstream 16706 34134939 ~ 34135292 (-)
G2023453 NA non-coding upstream 126651 34244884 ~ 34247712 (-)
G2023513 NA non-coding upstream 220315 34338548 ~ 34338803 (-)
G2023532 NA non-coding upstream 240486 34358719 ~ 34358947 (-)
G2022042 LOC106562320 other downstream 1235738 32875255 ~ 32878771 (-)
G2021975 NA other downstream 1280028 32831627 ~ 32834481 (-)
G2021979 NA other downstream 1295529 32810623 ~ 32818980 (-)
G2021956 NA other downstream 1397596 32716126 ~ 32716913 (-)
LOC110506691 LOC106562361 other upstream 382620 34499589 ~ 34523950 (-)
G2024673 NA other upstream 758189 34876422 ~ 34928381 (-)
G2024949 NA other upstream 1277841 35396074 ~ 35399967 (-)
G2025061 NA other upstream 1377554 35495787 ~ 35497803 (-)
LOC110506721 LOC106562390 other upstream 1430027 35401501 ~ 35548790 (-)

Expression

LOC110506684(LOC106587537) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110506684(LOC106587537) Expression in each Bioproject

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LOC110506684(LOC106587537) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network