LOC110506120 (LOC106562381)


Basic Information

Item Value
gene id LOC110506120
gene name LOC106562381
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 35685065 ~ 35687778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110506120
ATGGGCATTCCAgctcttttcaTGTGTTATGAAAATACACTCCTCTTTGCTTGGGTGCTAAAAGAGATGTGTTATAATCCAGTAACACTGGGTTCAAGAGTCTACAACAACACCATAAACCAGTTCGGCCCAAAAGACTCTCACCTCATCAACAAGGTAGTTATTGATGGGACTGCTTACATTGCAGACGTGAGCTTTGGGGTATCCTCCCAAATATGGCACCCTCTTGAGCTCGTCTCCGGGAAGGACCAGCCACAATCCCCTGACGTCTTCCGTCTCATACAAGATGGAGACCTGTGGAAGTTGGAGAAGACTGGTCGAAAGCCTCTGGTTCTCAATGAGGCCTTTGCCAACTCGCCTCTGGTACACAAGAGCCCAACCAAGAAGATCTAAGGCTTCACCCTGGTTCCCCGTGGGTTTGATCAGTTCCTAGAGACTTCCCACTGCCTTCAGACAGATCCAAAGTCTCTATTCACCAACAAGTTCATCTGCTCACTGCAGACGGCTACAGGATTCAGAGCTCTAATTGTCTGGACCTTCAGTGAGGTCACCTACAACAACCAGGATGGTTTTGATGTTTTCGATATGAAAGATATATCTGTTGATGATGTGGATAAAGTGATGAACGAAATGTTTAATGTGTAGTTAGCAAACAAGCTGGTTCCCATAAACAACAAAGCTGGCTACACTATTTAAGAACTTGATTGCATGTAACATTTCATTTTTAATG

Function

NR:

description
arylamine N-acetyltransferase, pineal gland isozyme NAT-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110506120 True 730 mRNA 0.45 2 35685065 35687778

Neighbor

gene id symbol gene type direction distance location
gpib LOC106562377 coding upstream 59159 35608206 ~ 35625906 (+)
ss18l2 s18l2 coding upstream 122972 35560782 ~ 35562974 (+)
LOC110506722 LOC106562375 coding upstream 126337 35551539 ~ 35558728 (+)
LOC110506720 LOC106562374 coding upstream 288635 35367891 ~ 35396430 (+)
LOC110506717 LOC106562373 coding upstream 334855 35141567 ~ 35350210 (+)
LOC110506728 cnep1r1 coding downstream 275 35688053 ~ 35690950 (+)
LOC110506727 LOC106587571 coding downstream 3484 35691262 ~ 35698106 (+)
LOC110506730 LOC106587575 coding downstream 13012 35700790 ~ 35733777 (+)
LOC110506731 LOC106587576 coding downstream 48697 35736475 ~ 35812918 (+)
LOC110506733 LOC106562389 coding downstream 224977 35912755 ~ 35950964 (+)
G2024553 LOC106562336 non-coding upstream 1558 35681098 ~ 35683507 (+)
G2024471 NA non-coding upstream 141691 35543175 ~ 35543374 (+)
G2024470 NA non-coding upstream 141932 35542853 ~ 35543133 (+)
G2024437 NA non-coding upstream 234385 35450474 ~ 35450680 (+)
G2024598 brd7 non-coding downstream 131927 35819705 ~ 35820334 (+)
G2024657 NA non-coding downstream 213928 35901706 ~ 35902214 (+)
G2025280 NA non-coding downstream 233502 35921280 ~ 35921506 (+)
G2025281 NA non-coding downstream 234352 35922130 ~ 35922386 (+)
G2024473 LOC106562390 other upstream 136316 35547972 ~ 35548749 (+)
LOC110506714 LOC106562344 other upstream 687875 34992692 ~ 35036017 (+)
tm2d3 tm2d3 other upstream 788440 34891516 ~ 34896626 (+)
G2022626 NA other upstream 1699220 33982717 ~ 33985845 (+)
LOC110506662 LOC106587514 other upstream 2895856 32702746 ~ 32819040 (+)
G2025422 NA other downstream 371256 36059034 ~ 36059518 (+)
G2027338 LOC106578490 other downstream 2159517 37847295 ~ 37847578 (+)
G2027611 NA other downstream 2530448 38218226 ~ 38219793 (+)
G2027635 NA other downstream 2544758 38232536 ~ 38232938 (+)

Expression


Co-expression Network