LOC110506728 (cnep1r1)


Basic Information

Item Value
gene id LOC110506728
gene name cnep1r1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 35688053 ~ 35690950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586555.2
TTACTTGTTTAAACCAATCACTGTACATTTTCCGAAATCAGCCAATCCACGTTAAGGTTTTCGCCTGTTCCCAATTGCCCAGGAGAACTAGCTAGCACGTCAACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAATGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatgaaatgtg
>XM_021586554.2
TAAACCAATCACTGTACATTTTCCGAAATCAGCCAATCCACGTTAAGGTTTTCGCCTGTTCCCAATTGCCCAGGAGAACTAGCTAGCACGTCAACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGGTAGTCAACATGATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAATGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatgaaatgtg
>XM_021586553.2
AACGTGCCTTCACAATTCACTTGAGTCGTTTGTTAGCTTGATTAGCCAGCCGCGGTGACGTAGCTAGCCAGGCTAACCTTTTCTCTTAAAGGACATTCATTTGTAAATTCGTCAAAATACCAAACTCAAGCTAATTACATTTTTGCTGTTTTCCCTCCGCGGGGGTCGACATTAACTTGTACAAAAGAAATGCACACAAAGGCTTGTTAGCTACAATAATTAGCCGGCTTGCTAGCTATGCTGTAAATAGTTAGCATACCGGTAGTTGTTAGCCCCAGAAGACCACCGCTGCACGCTCACCTGGACCGGTAGCGCCAGAACGGTTAACCAATGCAAACGTATCCGCGTACTTTACCCCATTTGATTGATTCTATTTATGTCCAGGTTATCACAAAGGTCGTTAACTATAGGCATGTTTTGCCAGTCCAAACTAAACATAATTCAGTCCCTTTTGGACAGGCGTCCTCGTGAAGATTAAGGTTAACCCTGAAGCTACAATTTACTCTTCCAATAGCAATTCAGTGGAATCGGAGCCTTCACTATGCAGTTGTGCTTAATTTACTTTTTGAAATACTCCATCGGTTCCAAACCAATCAAGCACAGCGCATATAAAGGATATTATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAATGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatgaaatgtg
>TU2315510
AGGAGAACTAGCTAGCACGTCAACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGGTAGTCAACATGATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAATGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatga
>TU2315511
AGGAGAACTAGCTAGCACGTCAACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAATGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatga
>TU2315512
AGGAGAACTAGCTAGCACGTCAACCAGCCGGAGAGAAGAGCAATGAATTCCTTGGAACAGGCCGAAGATCTAAAAGCTTTTGAGAGAAGATTAACAGAATACGTCTCCTGTTTGCAACCTGCAACTGGGAGGTGGCGAAGTAAGTTATTGTAGTTCCAACTCTGTCTAACCATAATGAATGACTCTATTGAAACTGTCTAACTATAATCAATGACTACACTGCAACTGTCAAACCATAATCATTTCAAGAGTAAATGGCCTCCCAGCCTGAGTAATTTGTATTTTCTTGTAAAGAATTCAGGCCCACATTATTCTGGCACTTTTTTTTGTATGGTGATATAATTCAATATCTCACATTGTTTCAGTGATTCTAATAGTGGTCTCTGTTTGTACTGCAACTGGAGCCTGGAACTGGTTGATAGACCCTGACACACAGAAGGTGTCTTTCTTCTCATCGTTGTGGAACCATCCGTTCTTCACCATCAGCTGCATCACTTTGATCGCTCTGTTCTTTGCTGGAATACACAAACGAGTCGTTGCACCATCAATTATTGCAGCTCGCTGTCGGACAGTTTTAGCGGAATACAACATGTCCTGCGATGATACGGGGAAACTAATTCTTAAACCACGGCCACACATCCAATAACCACAAACTTGGAGAGGTGGGGAAAAAAAATTTCTTAATGACTATGTTGATTCCCACTGAAAGACAGACTGACACAAGGACCAGAATCCTGTTTGGAGGATCTGAAACAATGTAAGAAGGAAGGAGATTGGGGAAATACAGAGGGGTGATTATGTTGTGCTCCATTACGTATTAATGAAGGATtgtgaggggagaggacatcAAACGCCTTTTTAACAGCATCTCAGTCAGTGTTATGGTTTCCCTTAAAGCTGCTTCTGGGCTCACACACCCTTTGACATAACTCATTCGCCATGAGTTCAGATGTATTTATTTCTAATGATGACATGCATTTGTTTTAGACAAATCTTTCTATTTTTAAACTAATTGTTATATACCTAATAAATacttgtatga

Function

symbol description
cnep1r1 Predicted to be involved in positive regulation of protein dephosphorylation and positive regulation of triglyceride biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in nuclear membrane. Predicted to be part of Nem1-Spo7 phosphatase complex. Predicted to be active in cytoplasm. Orthologous to human CNEP1R1 (CTD nuclear envelope phosphatase 1 regulatory subunit 1).

NR:

description
PREDICTED: nuclear envelope phosphatase-regulatory subunit 1 isoform X2

GO:

id name namespace
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586555.2 False 902 mRNA 0.42 6 35688053 35690950
XM_021586554.2 False 905 mRNA 0.42 6 35688062 35690950
XM_021586553.2 False 1375 mRNA 0.42 6 35688292 35690950
TU2315510 False 828 TUCP 0.42 6 35688133 35690944
TU2315511 False 816 TUCP 0.42 6 35688133 35690944
TU2315512 True 1042 lncRNA 0.40 5 35688133 35690944

Neighbor

gene id symbol gene type direction distance location
LOC110506120 LOC106562381 coding upstream 275 35685065 ~ 35687778 (+)
gpib LOC106562377 coding upstream 62147 35608206 ~ 35625906 (+)
ss18l2 s18l2 coding upstream 125960 35560782 ~ 35562974 (+)
LOC110506722 LOC106562375 coding upstream 129325 35551539 ~ 35558728 (+)
LOC110506720 LOC106562374 coding upstream 291623 35367891 ~ 35396430 (+)
LOC110506727 LOC106587571 coding downstream 312 35691262 ~ 35698106 (+)
LOC110506730 LOC106587575 coding downstream 9840 35700790 ~ 35733777 (+)
LOC110506731 LOC106587576 coding downstream 45525 35736475 ~ 35812918 (+)
LOC110506733 LOC106562389 coding downstream 221805 35912755 ~ 35950964 (+)
LOC110506121 nod2 coding downstream 303113 35994063 ~ 36014868 (+)
G2024553 LOC106562336 non-coding upstream 4546 35681098 ~ 35683507 (+)
G2024471 NA non-coding upstream 144679 35543175 ~ 35543374 (+)
G2024470 NA non-coding upstream 144920 35542853 ~ 35543133 (+)
G2024437 NA non-coding upstream 237373 35450474 ~ 35450680 (+)
G2024598 brd7 non-coding downstream 128755 35819705 ~ 35820334 (+)
G2024657 NA non-coding downstream 210756 35901706 ~ 35902214 (+)
G2025280 NA non-coding downstream 230330 35921280 ~ 35921506 (+)
G2025281 NA non-coding downstream 231180 35922130 ~ 35922386 (+)
G2025283 NA non-coding downstream 232513 35923463 ~ 35923680 (+)
G2024473 LOC106562390 other upstream 139304 35547972 ~ 35548749 (+)
LOC110506714 LOC106562344 other upstream 690863 34992692 ~ 35036017 (+)
tm2d3 tm2d3 other upstream 791428 34891516 ~ 34896626 (+)
G2022626 NA other upstream 1702208 33982717 ~ 33985845 (+)
LOC110506662 LOC106587514 other upstream 2898844 32702746 ~ 32819040 (+)
G2025422 NA other downstream 368084 36059034 ~ 36059518 (+)
G2027338 LOC106578490 other downstream 2156345 37847295 ~ 37847578 (+)
G2027611 NA other downstream 2527276 38218226 ~ 38219793 (+)
G2027635 NA other downstream 2541586 38232536 ~ 38232938 (+)
G2027708 LOC106562446 other downstream 2733021 38423971 ~ 38424603 (+)

Expression


Co-expression Network