LOC110506122


Basic Information

Item Value
gene id LOC110506122
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 36193479 ~ 36194049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110506122
ATGGAGTCCAAAAACAAGAGTTTCCAACCGTGGCGGGACTACATTAAATTAGTGGACCTAGTGCAGGAGATGCAGTTAGTCAAGTTCACCTCAGAACCGACAACCATTGACTGTCATGACTCTGGGATATGCTCCGCCATGGTGGAATTTGAAGAGTTTCCGCCGTGAGCCTTGCTGTCACAGATAACACCTGTGGCGACACCACCCCTACGGCACGAAATGGAACCACGGGAGTCTGAAATCGTACCCTTGCGTAAAGGTGCTCCTTTATGTCCATGCAGCACCAAGGGTCCAGAGCCCCCAACAGCAGCTTCAAGACCCTCTCAGATCACCTGAGGGCAAGTTCTGCAGCTTCTGCAAACACAATGGTGAGTCTGAGTCTGTGTTTGTGTCCCACAGCCTCAAGGACCAGGATGGGGACGTGATGTGCCCGTACCTGCAGCTGTATGTCTGCCCTCTCTGCAGGGCCACCGGGGCCCAAGCCCACACCAAGCACCATTGTCCCTGGGTCGAaacctcgacggccctgaaagaacttcattggactctatgtaacctGGAAACCACATAG

Function

NR:

description
LOW QUALITY PROTEIN: nanos homolog 1-like

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110506122 True 571 mRNA 0.53 1 36193479 36194049

Neighbor

gene id symbol gene type direction distance location
LOC110506735 LOC106562387 coding upstream 151032 36011326 ~ 36042447 (+)
LOC110506121 nod2 coding upstream 178611 35994063 ~ 36014868 (+)
LOC110506733 LOC106562389 coding upstream 242515 35912755 ~ 35950964 (+)
LOC110506731 LOC106587576 coding upstream 380561 35736475 ~ 35812918 (+)
LOC110506730 LOC106587575 coding upstream 459702 35700790 ~ 35733777 (+)
LOC118944405 LOC107550285 coding downstream 607831 36801880 ~ 36815681 (+)
LOC110506743 fto coding downstream 827526 37021575 ~ 37243475 (+)
LOC110506746 irx5 coding downstream 1524171 37718220 ~ 37724879 (+)
LOC110506747 LOC106587615 coding downstream 1780036 37974085 ~ 37979762 (+)
LOC100135793 LOC100135793 coding downstream 1864477 38058526 ~ 38085611 (+)
G2025571 NA non-coding upstream 2068 36191144 ~ 36191411 (+)
G2025568 NA non-coding upstream 7007 36186170 ~ 36186472 (+)
G2025564 NA non-coding upstream 9907 36183325 ~ 36183572 (+)
G2025557 NA non-coding upstream 13980 36179268 ~ 36179499 (+)
G2025530 NA non-coding upstream 32648 36160624 ~ 36160831 (+)
G2025591 NA non-coding downstream 14202 36208251 ~ 36208453 (+)
G2025622 NA non-coding downstream 43571 36237620 ~ 36237924 (+)
G2025624 NA non-coding downstream 43984 36238033 ~ 36238347 (+)
G2025629 NA non-coding downstream 47040 36241089 ~ 36241562 (+)
G2025725 NA non-coding downstream 124463 36318512 ~ 36318750 (+)
G2025422 NA other upstream 133961 36059034 ~ 36059518 (+)
LOC110506728 cnep1r1 other upstream 502535 35688053 ~ 35690950 (+)
G2024473 LOC106562390 other upstream 644730 35547972 ~ 35548749 (+)
LOC110506714 LOC106562344 other upstream 1196289 34992692 ~ 35036017 (+)
tm2d3 tm2d3 other upstream 1296854 34891516 ~ 34896626 (+)
G2027338 LOC106578490 other downstream 1653246 37847295 ~ 37847578 (+)
G2027611 NA other downstream 2024177 38218226 ~ 38219793 (+)
G2027635 NA other downstream 2038487 38232536 ~ 38232938 (+)
G2027708 LOC106562446 other downstream 2229922 38423971 ~ 38424603 (+)
LOC110506777 LOC106592882 other downstream 3615050 39809065 ~ 39815331 (+)

Expression

LOC110506122 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC110506122 Expression in each Bioproject

Bar chart with 6 bars.
LOC110506122 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Co-expression Network