Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110506738 |
| gene name | tox3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 36499890 ~ 36564258 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tox3 | Predicted to enable chromatin DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in rhombomere 3 and rhombomere 5. Orthologous to human TOX3 (TOX high mobility group box family member 3). |
| description |
|---|
| TOX high mobility group box family member 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021586571.2 | True | 4574 | mRNA | 0.46 | 7 | 36499890 | 36564258 |
36,490,000
36,500,000
36,510,000
36,520,000
36,530,000
36,540,000
36,550,000
36,560,000
36,570,000
36,580,000
36,590,000
36,600,000
36,610,000
36,620,000
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506737 | LOC106587587 | coding | downstream | 340359 | 36144492 ~ 36159531 (-) |
| LOC110506734 | LOC106562388 | coding | downstream | 518940 | 35978091 ~ 35980950 (-) |
| LOC110506732 | brd7 | coding | downstream | 678998 | 35813003 ~ 35820892 (-) |
| sdr42e1 | LOC106562336 | coding | downstream | 815240 | 35681082 ~ 35684650 (-) |
| LOC110506725 | LOC106562378 | coding | downstream | 819225 | 35640874 ~ 35680665 (-) |
| LOC110511520 | LOC106587590 | coding | upstream | 206631 | 36770889 ~ 36783965 (-) |
| LOC110506740 | LOC106562403 | coding | upstream | 229028 | 36793286 ~ 36913660 (-) |
| LOC110506741 | LOC106587594 | coding | upstream | 350516 | 36914774 ~ 36923482 (-) |
| LOC110506744 | LOC106562437 | coding | upstream | 740592 | 37304850 ~ 37308246 (-) |
| LOC118944515 | NA | coding | upstream | 1235139 | 37798150 ~ 37800786 (-) |
| G2025860 | NA | non-coding | downstream | 81821 | 36417852 ~ 36418069 (-) |
| G2025825 | NA | non-coding | downstream | 106415 | 36393244 ~ 36393475 (-) |
| G2025817 | NA | non-coding | downstream | 110318 | 36389370 ~ 36389572 (-) |
| G2025790 | NA | non-coding | downstream | 128058 | 36371594 ~ 36371832 (-) |
| G2025778 | NA | non-coding | downstream | 136364 | 36363320 ~ 36363526 (-) |
| G2026081 | NA | non-coding | upstream | 11412 | 36575670 ~ 36575870 (-) |
| G2026083 | NA | non-coding | upstream | 12331 | 36576589 ~ 36576934 (-) |
| G2026093 | NA | non-coding | upstream | 21273 | 36585531 ~ 36585847 (-) |
| G2026128 | NA | non-coding | upstream | 41533 | 36605791 ~ 36606006 (-) |
| G2026141 | NA | non-coding | upstream | 49485 | 36613743 ~ 36614174 (-) |
| G2025757 | NA | other | downstream | 156456 | 36343156 ~ 36343434 (-) |
| LOC110506721 | LOC106562390 | other | downstream | 951133 | 35401501 ~ 35548790 (-) |
| G2025061 | NA | other | downstream | 1002087 | 35495787 ~ 35497803 (-) |
| G2024949 | NA | other | downstream | 1099923 | 35396074 ~ 35399967 (-) |
| G2024673 | NA | other | downstream | 1571509 | 34876422 ~ 34928381 (-) |
| G2026993 | NA | other | upstream | 856153 | 37420411 ~ 37421037 (-) |
| G2027052 | NA | other | upstream | 926594 | 37490852 ~ 37491416 (-) |
| LOC110506753 | LOC106587607 | other | upstream | 1773595 | 38334242 ~ 38373760 (-) |
| LOC110506757 | LOC106562446 | other | upstream | 1916344 | 38411123 ~ 38504156 (-) |
