LOC110506139 (slc12a1)


Basic Information

Item Value
gene id LOC110506139
gene name slc12a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40680421 ~ 40736226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963880.1
AGAGTGGTTGGTAGAACCGCTGGTTCAGCCAATGGCTGAGTCCCAGGCAGAGCCCAGCATAGGGGCCAGGAGGATATAAAGCTGGGGTGGCAGAGCCAACCTCAGCCTATATGACAGGTCTATAGGTCAGCTCTGGACCTACACAAGGATTTAACTAAACAGAATCAGATGAACCAACACTAGTCTGTCGTACCAGCGCTCCAAACCCATAGCTGCCGATTGCTTCTCATACTTAGACAGTCTCTAGGCCCTGACCAGAGGACTGAAGGACCTCAGTATTCCTTTTCTGTAGTGTTTGACCTGTAGAAGCCAGTAGGTGTGAGGAGCCTGTATTTACAGCCAGTCTGATGGAGAATGATGCCTATGACAGGATCGGGGACGAACCCCCTAACTACGAGGAGACGTCTTTCTCCGGTGGTACCACCTCTAACGGTAATGGGACCGGTAACGGAGAGCACCGggctgtccgtccgtccgtggtCAGTGCGTTTGGTCATGACACGCTGGACCGCGTGCCCAACATCGACTTCTACCGGAATGCTGGGAGTGTGAGCGGTAACCGTGCGGTCCGACCGTCCCTGCAGGAGCTCCACGATGTCTTCcagaagaATGGAAGGATCTCAGTGACGAACAcggtggaggacagagagggcagcGACGGGACGCCGTCAGACGATGTGGAGTCTGTCATTCCCCTGGACAACAAAGATGGAACCGTGAGGTTTGGCTGGATAAAGGGAGTCCTGGTGAGATGTATGTTGAACATCTGGGGTGTGATGCTGTTCATCCGTCTGTCCTGGGTGTTTGGACAGGCCGGCTGGGGTCTGGGCATTGTGGTCATTGCTCTGAGCTGTGTGGTGACCACCGTCACAGGTCTCTCCATGTCTGCTATCTGCACCAATGGAGTGGTACGAGGAGGAGGGGCGTACTACCTGATATCACGTAGTCTGGGACCAGAGTTTGGCGGTTCCATTGGTCTCATCTTCGCCTTCGCTAACGCTGTTGCCGTGGCGATGTACGTGGTGGGCTTCGCAGAGACTGTGGTTGACCTACTCAAGGAAAACAATGCCATTATGATAGATGAGCTGAATGACATCAGGATCATCGGCTGTATCTCGGTGGTACTGCTGCTGGGGATCTCAGTGGCCGGGATGGAGTGGGAGGCCAAGGCCCAGATCGGTTTGCTGATCATCCTCCTGGTAGCCATCGTCAACGTCTTCGTAGGAACTGGCATCCCAGCCTCCACCGACAAGAAGTCTAAAGGATTCTTTAACTACGACGCCAAAATATTTATGGAGAACTTACCGCCGGACTTCCGAGATGGAGAGACGTTCTTCTCTGTGTTCGCCATCTTCTTCCCTGCTGCCACGGGTATCCTGGCTGGagctaacatctctggagacctgaagGATCCCCAGGATGCTCTCCCTAAAGGAACCCTGCTGGCCATCCTCATCACTGGAGTCACATACCTGGGAGTTGCCCTCTGTGTCTCTGCCACGGTGGTGCGTGATGCAACAGGAAACATCAACGACACCATTGCCACAGGGATGGACATGTTCTGTAACGGTAGCAACACTGCTGCCTGTGAGCAGGGATGGAACTTCTCCTCCTGTGATGTCAGCAGCTGCAAGTTTGGCTCCATGAACAACTTCCAGGTGATGACCATGGTGTCAGGGTTCGGTCCTCTCATCACAGCAGGAACCTTCTCTGCCACCCTCTCCTCCGCCCTCGCCTCCCTCGTCAGCGCACCCAAAGTCTTCCAGgCTCTGTGTAAAGACAACATCTACACTGCACTGAAGTTCTTCGCCAAGGGACACGGCAAGAACAACGAGCCAATCAGAGGCTACGTTCTGACTTTCATCATCGCTGTCGCCTTCATAATCATCGccgaTCTGAACGTCATTGCGCCCATCATCTCCAACTTCTTCCTGGCATCGTACGCCCTCATCAACTTCTCCTGCTTCCACGCTTCATACGCTAAGTCACCAGGCTGGAGGCCAGCGTACAGGTACTACAACATGTGGTTGTCTCTGTTTGGAGCGGTGCTCTGCTGTGGTGTGATGTTTGTCATCAACTGGTGGGCTGCTCTCCTCACCTACGCAATCGAGATCTTCCTATATGTCTACGTCACTGTCAAGAAGCCAAATGTGAACTGGGGCTCGTCCACTCAGGCCGTGACGTTTGTCAGCGCGGTCAACAACGCTCTGTCACTGACCGGAGTAGAGGACCATGTTAAGAACTTCAGAcctcagtgtatggtgctgacaGGAGCACCTAAGAACAGACCGGCACTCCTGGACCTGGCTCATTGTTTCACTAAGAACTACGGACTCTGTCTCACATGTGAAGTCTTTGTGGGCCCCAGAACAGAGACATTGACAGATGTGAACGCTGGAATGGAGAAGAACCAGATGTGGCTgaataagaagaagagaaaagCCTTCTATGCTGCAGTGGCCTGTGACTCCTTCAGACAGGGAACTGAGAACCTCATGCAGGCATCAGGTCTGGGTCGTCTGAAACCCAACATTCTGATGATGGGCTTCAAGAAGGACTGGAGGACAGCAGACACAGCCGGCGTACAGAGCTATGTAGGAGTACTGCACGATGCATTTGACTTTGAGTACGGAACCGTGGTACTAAGGATGAACCAGGGACTGGACATCTCACACATCATAAAGGCTCAGGaggagatggagagagaagccCAGGAGCAGAAGGATCTGGAGAAAGAAGAGCTGGCTGAGGAGAATAAGGGGAAATCCATCTTCAGGAAGTCACGGAACTTATCTACACAAGGCCTCACTTCCAGAGCATCAGTGACGACCCCCCAGTCTCCCCAGGTAGTGGTAGTGAATGAAAGGCTGGTGTCCAACAGCACTCAGTTCCAGAGGAAACAGGGCAAAGGAACCATCGATGTCTGGTGGATGTTTGATGACGGAGgtcTAACCCTACTGCTGCCCTACATCCTGACAACCCGTAAGAAGTTCAAAGACTGCAAGATGAGGATCTTCATCGCTGGCCAGCCGGGACGTGTCGAGCAGGACAGGCATGAGATGAAGTCTCTGCTGGAGAAGTTCAGGATCAAATATGCAGACATCCACGTCATCGACGACATCACCCAAAACCCCAACTCTAACAGCTGGAAGATGTTTGAGGACATGATTGAGCCGTTCCGTCTTCACGAGGGGTCAAAGAGCACCACTCTGGCCGAGGCTCTGAGGAAAGACAACCCCTGGAAGATCTCTGACGCCGAGCTGGACACCTTCGAGGAAAAGaccAACCTCCAGGTCAGGCTGAATGAACTACTGCAGGAGAACTCCCGAGCTGCCAACCTCATCATAGTGAGTATGCCCATCGCCCGTCTAGGCTCAGTCTCTGACCACCTCTACATGGCCTGGTTGGACATCCTCACCAAGAACCTCCCTCCCACCATGTTGATCAGAGGCAACCACAAGAGCGTCCTCACCTTCTACTCATAGACCGACCCTCTCAGCAGTCACTAGATGGCCACAAGGGACAACCAAGGCACTTTCATCAATATCCAGGAGTTAGTTGCTATCAGTTTAAATGAAAAGGTGATGGTTAGAGATAAGGTTATGGGAAAGGTTAAAGGTTAGAAAGTGAGGCTCTTCCGTCTTGTCTAGCATGACCAAATAGTGATGACAcaacacagacatatggactcAGGGATATATGGGCACAAGGACCGGACACTGCCTGGGATGGGTCAATTACACTGCCTGGGATGGGTCAATTACACTGCCAATGCCTATGCTGCCCCCCGTTGGAATTGTACATGTGGTGCATAATTAGGGGTCCAAACCCTGAATCGGGCTGGAAAACtcgtattattatatatattagtCATGtaacagatgctcttatccagagcaacttacagttagtgtTCTTGTTAAGgatattattattctgacatattattattattattccaatTTTAAGAGAGCTATAGTGCTTAAATAGTTTGACCTATAGAGACCAAACTTGGAGGGATGGTGTAAATTGGTGACCCAATACATCTGGTAAATCTTTGGTATTTGACACAGAGTGGGACTGGGATGTTAGATAACAGACTGGTCCCAGGCTAGTTGGAGCCCCCTGCTGGCTATGCATCTCAACACGGTATACTTTTTCCTTAAATGTGCACTTGTCCACTACCCAgatagtggtcctctgtagcacagttggtagagcatggtgcttgcaatgccaggatagtgggtttgatatCTGGGACCATTcatatgtaaaacatttttggCAAGCATGACAGTAAGTTTCTTTAGATATAAGTGTCTGATAAATGGCATAAATGATATTAGTCTAAGAGCAAAAGATTGAGTCAAGACCAGAACCTGTAGTTCATACATACAGACTCCTCCATAGTTCTCAACCCTGAGGCCGGCATGGGCTAGTCCCTTCGTCTTGTACATGCCAACCCATGGCGGcccaggttcaaatcccaccactgctgCTTTCAGATAGACATCCCTAAACACAGAGTTGGTGTTGTGGCTAAATTTGATGACTTAAATAAGGGCAAAATATTTGAGGAAGAGTCAAAAGGCTTGGGCCCAGGTCATTGCTGCTTGCAGCTAGCCTATATGTATAATTCTTCTTTTGGGGGAACAACAGATgatacacactgtacacaaaacattaagaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcgatcAGTATAGATGaacgggaggagacaggttaaagaaggatttttaagccttgtgacaattgagacatgtattgtgtatgagtgccattcagagggtgaatggccaagacaaaatatttaagtgcctttgaacggggtatggcagtaggtgtcaggtgcaccagtttgtgtcaagaactgtaatgctgttgggtttttcacactcaacagtttcccatgtgtatcaagaaaggtccaccaccctaaggacatccagccaacttgacacaactgtggaaaacattggagtcaacatgggccagcattcctgtggaacgctaattgaggctgttctgcgaGCAACtcaaggtgtccttaatgttttgtacactgtgtatgtaGGCTAGTATACACAAATATGATGGTGTTCTAGGAAATGAACATTATAGCAAACAAATGACCTATGCAAAAAGTGatcaatatataaataaataaataaatatatatatatatatatatattcaaatgCTACTAGCGGCGTTGAtaacttgatttaaaaaaaataagattaGTTTGATATCCattgaaaaatactgtatactactTTGTATAGATGTGTATATTCCACACAAGTAGCTACTAGTTGAGTGTCTCGGGAAATAATGAAGGGATCACTTACTACCTtaatgcacacgcacgcacacacacacacacacacacacacacacacactgtgatgaAAATCTATCAAACAGAACAGGAAAATGTAAATCAACTTATGTGCTGTATATTTTCAATATAGAAATGCTtgatttatttctgtgttttaacCATTGTCTTTTATAAGACTCAGTCCTTATCATATTTAACTGTCATATTTTAATTACTGTATTATGAAGAAGGAATAAAATGTTGAGTTACTCTTA

Function

symbol description
slc12a1 Predicted to enable sodium:potassium:chloride symporter activity. Predicted to be involved in cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within ion transport and transmembrane transport. Located in apical plasma membrane. Is expressed in eye and renal system. Human ortholog(s) of this gene implicated in Bartter disease and Bartter disease type 1. Orthologous to human SLC12A1 (solute carrier family 12 member 1).

NR:

description
PREDICTED: solute carrier family 12 member 1

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K14425 SLC12A1, NKCC2; solute carrier family 12 (sodium/potassium/chloride transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963880.1 True 5677 mRNA 0.48 26 40680421 40736226
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Neighbor

gene id symbol gene type direction distance location
dut dut coding downstream 12579 40663518 ~ 40667842 (-)
LOC110519217 LOC106587666 coding downstream 314474 40335544 ~ 40365947 (-)
LOC110506134 LOC106587633 coding downstream 372510 40296124 ~ 40307911 (-)
LOC110506132 LOC106562499 coding downstream 410569 40213044 ~ 40269852 (-)
pldn pldn coding downstream 479505 40197134 ~ 40200916 (-)
LOC110519157 slc24a5 coding upstream 67877 40804103 ~ 40832292 (-)
LOC118944423 NA coding upstream 135206 40871432 ~ 40873618 (-)
LOC110519559 LOC106562535 coding upstream 201804 40938030 ~ 40983650 (-)
LOC110506810 LOC106562534 coding upstream 695036 41431262 ~ 41439598 (-)
LOC110515873 LOC106562546 coding upstream 726490 41461857 ~ 41567947 (-)
G2029908 NA non-coding downstream 6847 40672703 ~ 40673574 (-)
G2029907 NA non-coding downstream 8741 40671267 ~ 40671680 (-)
G2029876 NA non-coding downstream 97809 40581285 ~ 40582612 (-)
G2029858 fbn1 non-coding downstream 113609 40551179 ~ 40567512 (-)
G2029857 NA non-coding downstream 131844 40548322 ~ 40548577 (-)
G2029934 NA non-coding upstream 28143 40764369 ~ 40764612 (-)
G2030117 NA non-coding upstream 64682 40800908 ~ 40827265 (-)
G2030131 NA non-coding upstream 108524 40844750 ~ 40845691 (-)
G2030140 NA non-coding upstream 128013 40864239 ~ 40864519 (-)
G2030145 NA non-coding upstream 132746 40868972 ~ 40869245 (-)
G2029844 NA other downstream 172139 40507746 ~ 40508282 (-)
G2028779 NA other downstream 1449611 39229129 ~ 39233948 (-)
G2030106 NA other upstream 39488 40775714 ~ 40778988 (-)
G2030157 NA other upstream 151377 40887603 ~ 40888684 (-)
G2030162 NA other upstream 162244 40898470 ~ 40899021 (-)
G2030156 NA other upstream 170397 40906623 ~ 40907193 (-)
G2030291 NA other upstream 475251 41211477 ~ 41211852 (-)

Expression

LOC110506139(slc12a1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
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LOC110506139(slc12a1) Expression in each Bioproject

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LOC110506139(slc12a1) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network