LOC118944455 (lysm2)


Basic Information

Item Value
gene id LOC118944455
gene name lysm2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41723275 ~ 41738093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963874.1
CACACGGCGCGTTTcacgttgttttttttttttacgtctgCGACGTAAGTAAGTCacgactgtctgtctgttgcatCAAACAGCGAACGGCTCGGTTTTGCCTGACCTGAAATATGCCACATTCACACAGGATCGACATGTGTCACCAAACTAGAAATGGCAATCTTCCCGCAGCCTGACTGATTAAGCTAGCCAGCCACTTGGCTACCTCCTAGCCCAGGTTAGCTGAGTGCAGTCGGCGCATCACGAACCAACAAGCAGCTACCGAGAGAAGATGGCGGAGTACTCGCCTGTCCTGCCGATGAGGGATGGTGGAGCGAGGTTTGGTATCGGACAGCCCATCTTTCCCCGGTCCCGGTCCGGTTCAGAATCCGATAGTGAACTGTCTCAGAGTCTGGCCCGAACCAAGATCCGGTCTTACGGGAGTACGGCTAGCGTAGCGGCTTCTCTCGGCGAGAAATACATAGAGCATCGGGTCACAGACAGCGACACTTTGCAGGGCATAGCCCTCAAATACGAAGTAACGATGGAGCAGATCAAGAGGACTAACAAGATGTTCAGTAACGACTGTATCTTCCTGCGTAACACCCTCAACATCCCTGTGGTCTCAGAGAAGACCTCTCCCTTCAACGGCCTGTCTCTAGAGTCCCCCGACGGagatccccaggaccaggacttcAACCCCCTTTGTGTGGGGCAggacagggacactgaggaggaCCCCTCGCCACCTCTGGCCCCTGGGGATAAGGACAGTAGTAGTTATAAACGGCCCCAGCCGGAAGAGCTGTCGGCTCAAGACTTCCTGCACAGACTGGACTTGCAGATTAAACAGTCAAAGCAGGCAGCACGCAGGCTCAAAGAAGAGGAAGTGAGGGACAGTGAAGAGGAATACACACTTCCTGTTTCATCATACCAGGAGATCTAAAGGACACAGTCGTTTACCTGAAGCCCTGATTAACACCCATCCACCCATCAATCCTTCCTACCTTTCCCTTCCTGTATCTCTTTTACCAAACCATCACACTGTCATGTCAAAGTGTTTCAACTGAGGATTCATCCTTTGCCTTTTTAATATTAGTGTCATTATCATACGTTTTATTATTAGTATTCTTCTGGTTTTGTACTGTTCAACTGCTGTCAATCATCTGAACAGCAGGTAGTCTGTTACTATGACACTCATCCACTCACTACACGTCTACATGCTGCTGCTGTACAGAATAACTCCCTGGTCTgtgtataccacacacacacatgcatacacaggaaacacacaggtgtgtgtgtgtttgggcgaTTAGTTCGATACTGGCTTTTACCCTAACTCTGATGATCCAATCCCTCCTAGAATAGCATCAGTCCACCAGATGGATGGAGAAGCCTCCAGTattacctcctcttcctcctcctcctgtcttcctcctcttttcctcctcctccttctcttcctcctctcctctcttcttcctcctctcctcttcttttcctcctcctcctcctctccttctcctctcttcctcctcctctgctcctctcttcctcctcctcctcagtgttTGAAACTAGGCTGCTTCCATAATGGCAGCCTATTTATACCCCAAcattgtgtgcatcccaaatggctccctattccctatgtagtgcactacttttgaccagggcccgtagggttcactacttttgaccagggcctgtagggttcactacttttgaccagggcccgtagggtttTGGTCAAGAGTAGTGTataacatagggaatagggtaccattttggaTGTATCCCTCGACTGAATTCTCAACCAGAAGCAGTGGATGGGAGGGTTGGTGGAGCTGTGGATGGGAGGGTTGGTGGAGCTGTGGATGGGAG

Function

NR:

description
LysM and peptidoglycan-binding domain-containing protein 2

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963874.1 True 1869 mRNA 0.50 3 41723275 41738093

Neighbor

gene id symbol gene type direction distance location
LOC118944452 LOC106587168 coding downstream 47802 41665197 ~ 41675473 (-)
LOC118944424 LOC106587313 coding downstream 58195 41660302 ~ 41665080 (-)
LOC110515873 LOC106562546 coding downstream 155328 41461857 ~ 41567947 (-)
LOC110506810 LOC106562534 coding downstream 283677 41431262 ~ 41439598 (-)
LOC110519559 LOC106562535 coding downstream 739625 40938030 ~ 40983650 (-)
LOC110506143 LOC106562454 coding upstream 16928 41755021 ~ 41779868 (-)
LOC110506142 LOC106562525 coding upstream 89455 41827548 ~ 41862932 (-)
LOC110506831 NA coding upstream 153842 41891935 ~ 41895295 (-)
LOC118944570 NA coding upstream 155038 41893131 ~ 41893245 (-)
LOC118936287 NA coding upstream 168731 41906824 ~ 41916531 (-)
G2030769 NA non-coding downstream 990 41720815 ~ 41722285 (-)
G2030777 NA non-coding downstream 6093 41716842 ~ 41717182 (-)
G2030770 scg3 non-coding downstream 16559 41698473 ~ 41706716 (-)
G2030771 NA non-coding downstream 19128 41702546 ~ 41704147 (-)
G2030765 NA non-coding downstream 35582 41687198 ~ 41687693 (-)
G2030789 NA non-coding upstream 11375 41749468 ~ 41749705 (-)
G2030790 NA non-coding upstream 11758 41749851 ~ 41750054 (-)
G2030792 NA non-coding upstream 12942 41751035 ~ 41751736 (-)
G2030810 NA non-coding upstream 66010 41804103 ~ 41804343 (-)
G2030811 NA non-coding upstream 67382 41805475 ~ 41805705 (-)
G2030291 NA other downstream 511423 41211477 ~ 41211852 (-)
G2030156 NA other downstream 816082 40906623 ~ 40907193 (-)
G2030162 NA other downstream 824254 40898470 ~ 40899021 (-)
G2030157 NA other downstream 834591 40887603 ~ 40888684 (-)
LOC110506841 cart other upstream 409267 42147360 ~ 42148871 (-)
LOC118944568 LOC106562433 other upstream 478346 42214901 ~ 42217502 (-)
G2031225 NA other upstream 605189 42343282 ~ 42346725 (-)
G2031259 NA other upstream 630161 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 721164 42459257 ~ 42461315 (-)

Expression


Co-expression Network