LOC110506839


Basic Information

Item Value
gene id LOC110506839
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41984638 ~ 41986095 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039797.1
GACAGAACTGCTCTGTCTGTTAACCAAGCTAGTTCTGAGACAGAACTGCTCTGTCTGTTAACCAGGCTAGTTCTGAGACAGAACTGCTCTGTCTGTTAACCAGGCTGCGATAACAATACTGAGAGGTTTAACCAGGCTAGTTCTGAGTGATCCAGCTGATCCGAATGTGAAGAAGCAGATTAACCTTTACGTTCTCCGTGGAGGACATTGATATCTTGGTTGCCTTGGTGACATACTAGTTAGTAGTTGTATATATTTCTGCTCCATCAACTCAAAAGGGTTGTCAGTCAAAGTCAGACTGTCTCCTCTATTGTGTGTGAATACAGTGCATATCAAACTTATTTTTAGGGCAGAATGTCTGTTATTTTATTTCCTTACTCTTGTCTGAAGTCTGTCTATTTCTAATGGTTGCCCTGAGAAACGAGGGGAATTAATTAGTCAGCGATTGATTAAAGAAAACTGGACAAGTTCTACATTTTAAGAGACTGATTTTTGACCGTACAGGTAACTAACTGTCTTACTAACAGTCAAAGGGAAACTAACATGCCTGCTATATTGTTTAGCTGAGAGAACATTCTGTATAACAAAGATTGGATCATTTTCCAGTGCTTGCAATTGGCTTTCATGTAGAGAATGGGATTCAGAACAACAGTATCCCTTTATATCTCAGCAACTATATGAGAAGATGCTCAATCTTCTTGTGCTGTAATTTAACCAGTTTTCCTGTGGTCTTTGACTTCAAGGTTGTCTTAACAGAGACATCAACTGTTAACTCATGTCAGCGTCATTCTGAAGACTAGAATTAACATTGTATTCATAGACATACACAAACCACAACACACAAAACTGACTGCCAGATAGTGACTCGGATCACTATATCAATACATTTTATATCTAGGGTATTTATAATGGTTCACACAGTGAATTTttccaaataaaaaaaactaagaaCAAAAACAGTAACAATGTATTGTGCAAAAATAATAATTCAGTTGAATTCTCCAAAACTCCTCAGAATCCTGATGTAGAAAATCCTCATGAAGATTGTCCATCATTCCAATAAACTCTGCTTGTCTGTGCATGCTACCTTATTGGTTCTAATCCTGTAGGTAATagtttaaaaatgaataaaatagaaaggctATTTTAAAAGATGCATATTTAAAAAGCTAACTGTGGATGGTATGGGGAAGGCTGGTGCAAGGTCGTCGTCTTGCCTCCACTGGCTGTGCTGGAAGGAAGGCGTTGGGATCGCTTTCCTCTTTCTTTTTGCAAGCTTCATGACTGTTCTTAAATCTTTTGTTTTAAGTGCAATATACTTCTCTATCTATCTTTAGGAACATAGAACTTCAGCAGATTTATTGTCAAAGGGGGAAAGTGTGGTGATCATCAATAAAACATGTATTGAAGAATACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039797.1 True 1420 mRNA 0.37 2 41984638 41986095

Neighbor

gene id symbol gene type direction distance location
LOC118936287 NA coding downstream 68107 41906824 ~ 41916531 (-)
LOC118944569 NA coding downstream 73634 41910803 ~ 41911004 (-)
LOC110506831 NA coding downstream 89343 41891935 ~ 41895295 (-)
LOC118944570 NA coding downstream 91393 41893131 ~ 41893245 (-)
LOC110506142 LOC106562525 coding downstream 121706 41827548 ~ 41862932 (-)
LOC110506148 LOC106587747 coding upstream 190 41986285 ~ 42056568 (-)
LOC110506147 bend2 coding upstream 81637 42067732 ~ 42070472 (-)
LOC118944459 tubgcp4 coding upstream 132326 42118421 ~ 42138004 (-)
LOC110506841 cart coding upstream 161669 42147360 ~ 42148871 (-)
LOC118944568 LOC106562433 coding upstream 228806 42214901 ~ 42217502 (-)
G2030984 NA non-coding downstream 5695 41978494 ~ 41978943 (-)
G2030982 NA non-coding downstream 7002 41974255 ~ 41977636 (-)
G2030945 NA non-coding downstream 63199 41903314 ~ 41921439 (-)
G2030944 NA non-coding downstream 68886 41891880 ~ 41915752 (-)
G2030942 NA non-coding downstream 79562 41890181 ~ 41905076 (-)
G2031004 NA non-coding upstream 45687 42031782 ~ 42032359 (-)
G2031017 NA non-coding upstream 74783 42060878 ~ 42061560 (-)
G2031029 NA non-coding upstream 108538 42094633 ~ 42094991 (-)
G2031002 NA non-coding upstream 111053 42097148 ~ 42099490 (-)
G2031083 NA non-coding upstream 233410 42219505 ~ 42220377 (-)
LOC110515873 LOC106562546 other downstream 416725 41461857 ~ 41567947 (-)
G2030291 NA other downstream 772786 41211477 ~ 41211852 (-)
G2030156 NA other downstream 1077445 40906623 ~ 40907193 (-)
G2030162 NA other downstream 1085617 40898470 ~ 40899021 (-)
G2030157 NA other downstream 1095954 40887603 ~ 40888684 (-)
G2031225 NA other upstream 357187 42343282 ~ 42346725 (-)
G2031259 NA other upstream 382159 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 473162 42459257 ~ 42461315 (-)

Expression


Co-expression Network