LOC110506841 (cart)


Basic Information

Item Value
gene id LOC110506841
gene name cart
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42147360 ~ 42148871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586700.2
TTCGGACACGGCGGTACACAGATAAAAGGTGTTTGGATTGCGGTAACTGGAGTATTAGAACGGGACCTTTTTGGAGACGAAATATATCTTATACTGTGCGCAATCTCATTAGGACCATGGAGAGCTCCAGGCTATGGACCAGAGCGGTGGTTTGCGCGGTGTTGCTGTCCATCGTTCTTAGTGCTGAAATTGACTACTCGGATTCCGAACTGGACTTCGACACAAGAAGTGTGAGAGACTTCTACCCCAAAGATCCGAATTTGACCAACGAAAAGCAACTGCTTGGAGCACTACATGACGTTCTTAAAAAGCTGCAGACCAAGAGACTTCCATTCTGGGAAAAGAAATTCGGCCAAGTCCCTACGTGCGACGTTGGAGAGCAGTGCGCAGTGAGAAAGGGCGCGAGAATCGGCAAAATGTGCGACTGTCCTCGCGGAGCTTTCTGCAACTCTTACCTGCTCAAGTGCTTGTGAATTGAATTGGTCTGAATGTAAGTTAGAAGTTGATGGCAAACTAAAACTGTTACATCAGAACGATATGTGATATAGGAATATTGTTATGATACTACAATATACGATTATCCGGAGAGTGACAGGTTGCATTCTGAGAGATTGTCCCCAAAAAGGCTTATTTTGAACTTatgaaatattttattttcaactGGATGTTTCTGTAACCAAAAATGAGTTGTGCTATGAATAAACAGCGCTCTATCTTGTTTTGTAAAGCA
>TU2323116
CAGACTTCGGACACGGCGGTACACAGATAAAAGGTGTTTGGATTGCGGTAACTGGAGTATTAGAACGGGACCTTTTTGGAGACGAAATATATCTTATACTGTGCGCAATCTCATTAGGACCATGGAGAGCTCCAGGCTATGGACCAGAGCGGTGGTTTGCGCGGTGTTGCTGTCCATCGTTCTTAGTGCTGAAATTGACTACTCGGATTCCGAACTGGACTTCGACACAAGAAGTGTGAGAGACTTCTACCCCAAAGATCCGAATTTGACCAACGAAAAGCAACTGCTTGGAGCACTACATGACGTTCTTAAAAAGCTGCAGACCAAGAGACTTCCATTCTGGGAAAAGAAATTCGGCCAAGTCCCTACGTGCGACGTTGGAGAGCAGTGCGCAGTGAGAAAGGGCGCGAGAATCGGCAAAATGTGCGACTGTCCTCGCGGAGCTTTCTGCAACTCTTACCTGCTCAAGTGCTTGTGAATTGAATTGGTCTGAATGTAAGTTAGAAGTTGATGGCAAACTAAAACTGTTACATCAGAACGATATGTGATATAGGAATATTGTTATGATACTACAATATACGATTATCCGGAGAGTGACAGGTTGCATTCTGAGAGATTGTCCCCAAAAAGGCTTATTTTGAACTTatgaaatattttattttcaactGGATGTTTCTGTAACCAAAAATGAGTTGTGCTATGAATAAACAGCGCTCTATCTTGTTTTGTAAAGCAGTCTGAGTGGTCTCTCTTTGCTCCAATAATTTCATGATCCACATGCATACAGATGATGCGCAATGCTGTGTGCGATAATGTTATGGGTTATTTCCTACAAACTCACGAAGTAAAAAATACCTACCGATAATATTAGTCATGAAGTACATGGATTCATGAGGGCTGAGTCTTGTCTGGACTGAGAATGAAATAGCATTTTTAGGCCAAATGGAGATATGGTCGGACAGAAACAAAACAGTAGTGTATGTACATTAGTTTAATCTAATACATAGTATTTACTTAGAGCAGTAGACATTTACACGACCTTCATTAAGATGAATAAAAGTTATATAATCACAATAGTTCAACTTGTAGAGAATATTTTATGGTTTTCAAGTGAATAAAAAGTGTGTTATTTAACTATT

Function

symbol description
cart Enables carcinine transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Involved in several processes, including carcinine import across plasma membrane; detection of light stimulus involved in visual perception; and positive phototaxis. Located in axon terminus. Is expressed in adult head; eye photoreceptor cell; lamina; photoreceptor cell; and retina.

NR:

description
cocaine- and amphetamine-regulated transcript protein-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009267 cellular response to starvation biological_process
GO:0032099 negative regulation of appetite biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0008343 adult feeding behavior biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586700.2 False 730 mRNA 0.43 3 42147764 42148866
TU2323116 True 1139 TUCP 0.40 3 42147360 42148871

Neighbor

gene id symbol gene type direction distance location
LOC118944459 tubgcp4 coding downstream 9760 42118421 ~ 42138004 (-)
LOC110506147 bend2 coding downstream 77292 42067732 ~ 42070472 (-)
LOC110506148 LOC106587747 coding downstream 91196 41986285 ~ 42056568 (-)
LOC110506839 NA coding downstream 161669 41984638 ~ 41986095 (-)
LOC118936287 NA coding downstream 231233 41906824 ~ 41916531 (-)
LOC118944568 LOC106562433 coding upstream 66035 42214901 ~ 42217502 (-)
LOC110506162 serinc4 coding upstream 313715 42462581 ~ 42509613 (-)
LOC110506854 mfap1 coding upstream 363414 42512280 ~ 42516373 (-)
LOC110526670 NA coding upstream 375715 42524581 ~ 42526465 (-)
LOC110518657 LOC106587629 coding upstream 399483 42548349 ~ 42551080 (-)
G2031002 NA non-coding downstream 48274 42097148 ~ 42099490 (-)
G2031029 NA non-coding downstream 52773 42094633 ~ 42094991 (-)
G2031017 NA non-coding downstream 86204 42060878 ~ 42061560 (-)
G2031004 NA non-coding downstream 115405 42031782 ~ 42032359 (-)
G2030984 NA non-coding downstream 168821 41978494 ~ 41978943 (-)
G2031083 NA non-coding upstream 70639 42219505 ~ 42220377 (-)
G2031201 LOC106562619 non-coding upstream 137790 42286656 ~ 42288310 (-)
G2031224 NA non-coding upstream 153187 42302053 ~ 42383608 (-)
G2031260 NA non-coding upstream 221836 42370702 ~ 42372438 (-)
G2031271 NA non-coding upstream 248923 42397789 ~ 42399014 (-)
LOC110515873 LOC106562546 other downstream 579851 41461857 ~ 41567947 (-)
G2030291 NA other downstream 935912 41211477 ~ 41211852 (-)
G2030156 NA other downstream 1240571 40906623 ~ 40907193 (-)
G2030162 NA other downstream 1248743 40898470 ~ 40899021 (-)
G2030157 NA other downstream 1259080 40887603 ~ 40888684 (-)
G2031225 NA other upstream 194416 42343282 ~ 42346725 (-)
G2031259 NA other upstream 219388 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 310391 42459257 ~ 42461315 (-)
G2031343 NA other upstream 408931 42557797 ~ 42558903 (-)

Expression


Co-expression Network