LOC110526673 (LOC106562627)


Basic Information

Item Value
gene id LOC110526673
gene name LOC106562627
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42551212 ~ 42554509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963862.1
GTTCAGAAGCGGTCATTCTGTTGGAGACTGTCAACTTCGCTGCTGAAAAGCACCGCAATCAACGACGTAAAGACGCTGAACAAACGCCATATATCAACCACCCAATAGATGCTGTCAGCTGcatctgttaatctgttaacagtGCACAGTGTGGCAAGGATCCTAAGCCATGAAGGTGGGATCACAGACATTGAAGTTTTGCAAGCAGCTTTGCTCCATGACACAGTGGAGGACACTGACACCAGCATAGGAGAACTACAGGCCATCTTTGGGCAAACGGTGTCTCGAATTGTTCAGGAAGTGACAGATGATAAGGCGCTACCCAAGCATGAGAGGAAACGTCAGCAGGTGGAGCATGCACCTCACGCCAGCCACCAGGCCAAACTGGTCAAACTGGCTGACAAACTGTACAACCTGAGGGACCTGAACCGCTGCACACCTACAGGTTGGCCGGCAGAGCGTGTTCAGGAGTACTTTGTGTGGGCAGCCCAGGTAGTGAGAGGACTGAGGGGGACCAACCCAGCACTGGAGAGACACCTAGAGGAGCTCTTCAAGCAGAGGGGGGTTGAGCTTTGACACCTCTCTACTTCTGATACAGGGTGGCACAACACAGCAACTCTTGATGCACACTTTTGTAAAGAGTTCATGTGAAAAGATTTGAGCATATTGTCTTCATAATAGGAGCCTTCTCCATTGAATAAACTCTTAGCTCTCATAAGGATTTATTTTTTATGGCTAATTTATTATTCATTCATTCTACAGTAATTTGCATACATTGTCTGTAGAACTGGCAAACCATCAATGTCACCTTGAGTTTTCTCGTATTGAATAAAGCAAAGATATGCATAATTTTGTGAAGATGAAAGGCTGTTGTGGAAATTCACCACCATGTCATGGAAATGACCACCAGGGACACttaagtcaatcttaaatgaatgaTCCTTTATTATCAgcgcgctggagaggttccaactcAATGCACTATAGaacatgtcaatcaggagctctgcTGGGGCAGTCCCAACTGTTGTCTTCTATATGGCtatacacagacatgttatattTGCATAATTCATTCATCATTACTGTTTTGTTTCATACATGTGACCGACCagtactggttcataacatgtgacagaccaatacctcaagGCTTCTTCTCTAAGccgagaccttgaaactgagaacTTTTGTTCTTAGAAAAGCACAAACGTTAAACATTTCCAGCACAGTTACTTTTGTAAATCATAGTTTGCAGGACTCATCTGAATTCTGATATGTGTTTTATCACCTACATTGCATCTGTTGCCTTTTGTATCATTAATACTGACAATCAAAGATGGGGTAGAAAATACATGTAATATTTATCCcctcaa
>XM_021607813.2
CGCACAAATGACGGGTGAGATCTGCGACCAAACGTTGGTAATAATGTGCCGTCTGTAGTGTGAGAAACTATTTTTACAGCATGAGTTCAGAAGCGGTCATTCTGTTGGAGACTGTCAACTTCGCTGCTGAAAAGCACCGCAATCAACGACGTAAAGACGCTGAACAAACGCCATATATCAACCACCCAATAGGTGTGGCAAGGATCCTAAGCCATGAAGGTGGGATCACAGACATTGAAGTTTTGCAAGCAGCTTTGCTCCATGACACAGTGGAGGACACTGACACCAGCATAGGAGAACTACAGGCCATCTTTGGGCAAACGGTGTCTCGAATTGTTCAGGAAGTGACAGATGATAAGGCGCTACCCAAGCATGAGAGGAAACGTCAGCAGGTGGAGCATGCACCTCACGCCAGCCACCAGGCCAAACTGGTCAAACTGGCTGACAAACTGTACAACCTGAGGGACCTGAACCGCTGCACACCTACAGGTTGGCCGGCAGAGCGTGTTCAGGAGTACTTTGTGTGGGCAGCCCAGGTAGTGAGAGGACTGAGGGGGACCAACCCAGCACTGGAGAGACACCTAGAGGAGCTCTTCAAGCAGAGGGGGGTTGAGCTTTGACACCTCTCTACTTCTGATACAGGGTGGCACAACACAGCAACTCTTGATGCACACTTTTGTAAAGAGTTCATGTGAAAAGATTTGAGCATATTGTCTTCATAATAGGAGCCTTCTCCATTGAATAAACTCTTAGCTCTCATAAGGATTTATTTTTTATGGCTAATTTATTATTCATTCATTCTACAGTAATTTGCATACATTGTCTGTAGAACTGGCAAACCATCAATGTCACCTTGAGTTTTCTCGTATTGAATAAAGCAAAGATATGCATAATTTTGTGAAGATGAAAGGCTGTTGTGGAAATTCACCACCATGTCATGGAAATGACCACCAGGGACACttaagtcaatcttaaatgaatgaTCCTTTATTATCAgcgcgctggagaggttccaactcAATGCACTATAGaacatgtcaatcaggagctctgcTGGGGCAGTCCCAACTGTTGTCTTCTATATGGCtatacacagacatgttatattTGCATAATTCATTCATCATTACTGTTTTGTTTCATACATGTGACCGACCagtactggttcataacatgtgacagaccaatacctcaagGCTTCTTCTCTAAGccgagaccttgaaactgagaacTTTTGTTCTTAGAAAAGCACAAACGTTAAACATTTCCAGCACAGTTACTTTTGTAAATCATAGTTTGCAGGACTCATCTGAATTCTGATATGTGTTTTATCACCTACATTGCATCTGTTGCCTTTTGTATCATTAATACTGACAATCAAAGATGGGGTAGAAAATACATGTAATATTTATCCcctcaa

Function

NR:

description
guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K21138 HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963862.1 False 1376 mRNA 0.43 5 42551212 42554425
XM_021607813.2 True 1420 mRNA 0.43 4 42551212 42554509

Neighbor

gene id symbol gene type direction distance location
LOC110518657 LOC106587629 coding downstream 132 42548349 ~ 42551080 (-)
LOC110526670 NA coding downstream 24747 42524581 ~ 42526465 (-)
LOC110506854 mfap1 coding downstream 34839 42512280 ~ 42516373 (-)
LOC110506162 serinc4 coding downstream 41599 42462581 ~ 42509613 (-)
LOC118944568 LOC106562433 coding downstream 333710 42214901 ~ 42217502 (-)
LOC118944434 NA coding upstream 9740 42564249 ~ 42565690 (-)
LOC118944394 LOC106587699 coding upstream 49242 42603751 ~ 42608866 (-)
LOC110513924 rasl12 coding upstream 62241 42616181 ~ 42958849 (-)
ubap1lb LOC106562636 coding upstream 74169 42627022 ~ 42642253 (-)
LOC110526685 LOC106562637 coding upstream 88395 42642904 ~ 42646490 (-)
G2031323 NA non-coding downstream 27124 42523870 ~ 42524088 (-)
G2031318 NA non-coding downstream 42865 42508116 ~ 42508347 (-)
G2031309 NA non-coding downstream 63578 42470669 ~ 42487634 (-)
G2031287 NA non-coding downstream 88849 42461976 ~ 42462363 (-)
G2031307 NA non-coding downstream 92421 42458567 ~ 42458791 (-)
G2031342 NA non-coding upstream 2843 42557352 ~ 42557581 (-)
G2031357 NA non-coding upstream 33092 42587601 ~ 42587854 (-)
G2031332 NA non-coding upstream 33829 42588338 ~ 42588647 (-)
G2031518 NA non-coding upstream 36764 42591273 ~ 42591501 (-)
G2031519 NA non-coding upstream 37066 42591575 ~ 42591865 (-)
G2031286 LOC106562727 other downstream 89897 42459257 ~ 42461315 (-)
G2031259 NA other downstream 181303 42368254 ~ 42369909 (-)
G2031225 NA other downstream 204487 42343282 ~ 42346725 (-)
LOC110506841 cart other downstream 402341 42147360 ~ 42148871 (-)
G2031343 NA other upstream 3288 42557797 ~ 42558903 (-)
G2031974 NA other upstream 630127 43184636 ~ 43185724 (-)
LOC110506858 LOC106562715 other upstream 637189 43180007 ~ 43198177 (-)
G2032150 NA other upstream 1014651 43569160 ~ 43570054 (-)

Expression


Co-expression Network