LOC110526685 (LOC106562637)


Basic Information

Item Value
gene id LOC110526685
gene name LOC106562637
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42642904 ~ 42646490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964102.1
GTGTACTATATCCGGTGTGTGACGTCAACTTGTAAACATGGTCGCTCCCGGCGTTCAACAGtgtcgttagctagctaaatacatttgaaaacaacCGAGTTTATTATTTTCCACAGTATCACGCCTGGATGGATAAACCAACGTTCCAGTCTACGTCGGGAGGACGGCAGCACCCAGTTTCTAACACCGGAGGTCCCGATACTTTTTACCTTAGAGGGGGACCTACATATCTCGGACCGCAGCCGATACAACCACCACCAGTATGTGAAACCTCGTTTCAAAGTAACATGCCGAGTTCAAATAACGTTGCTGGAGCGTTTTGGCCGGGTCAAACCCCTTCCCAATATCTTCCTCCACCACAAGCCCCAGTTAGCGACCAGAGATTCCCTCAAAGTCAAGAGTGGACTCCACCCGTGCCAGGATATGGCAGTCAACCATATGGCTTCAGACCCCCCTTTCCACAACCACCGCCTAGATTTGAAGGCTACGGACCACCTCATATGTCGTCCCCAGGATATGGTTTTGATCCGTCGATACCGCCACCGCCCCTCAACAACCCGGCACTCAGTCAGTTCCCTCCCATGTGTTCACAACCAGTTCCCTTCCACAGTCATCCAAAGCTGGAACCCAACACACATGAGGGGAGACCACCAAACTCATGGGCTCAGGGCTACAATATGGGTGATGCTCAATCGAACATGGGAACTTCAGATTTCCAAAGATCATTTGATCACAATCCAGCATACCCTAGACCCGGTCCACAACACAGTCCGTATGGAAACCCTGATGCTAGTTTTAGACCAAAGCATGCGGACAGTGGTTACACTGAACATCGTAGCAGACCTCTCCTCGCCTCCCCGTCCTTGATTCCGATGGGAACAGCTTTGCAGCGTGACCAAGGTTTTAGTAGGCCTATGGCTCCACAGCCACCAGACCAAGACTCCATTCAGAGGATGCAAGACGAACAGTGGCTGAAACATTTCTTGAGGAACCGAGAGAGGACAACAGCCAAGACCTCCAAACCGGCGGAACCTCATTCAAGGCAAACTCACCCAAAGGTCTCCGTGGCTCACATACGAGACACCCTGTACGGTGCCATACAGCTAGTTTCAAAGCTGTCCATGGCTTGTGAAACGCTGAAGCACAACATGGAGAATGAGAGCGTCTGGGCGGATTCTTACGCTGAGGCAGTGAGTGTGAAGACAGATCTGCAAGAGAAACTGAAGGTCCTCGGTGACTCTGAGTTTGTTGAAAGTCTTAAAAAGAAACTGAGTTCCATCAGTAAGAGAAGGGCCAGGCTACGGCGTCGACAAGTGGAACAGGACGAGGacaaacagagggaggaggaacGAGTGGCTGAGCGTGAAGCGGCCATCGACAAGTGGAGGATGAAACGTATCCATGAagtagaggagaagaagaggGCGCAAGAGCTGAAGCTGGCTGCTGACACGGTGCTCTGTGAAGTGAGGAAGAAGCAGGCAGATGCCAAGAGGATGCTGGACATCCTCAGGTCACTGGAGAAGCTACGCAAACTCAGGAAGGAGGCAGCCTCCAGGAAAGGGATCTTCCCGGAGAAAGAAGCCGATCAAGCATTTGATGAGCTGGTGGAGCGCCTGCGTGCACTGATCAGGAAGAGGACAGGGGTGTATGGGGCAGAGGAGAACGCCCTGCGGGTGATGCTGGAGAGCGAGCAGGAGGAGGAGCGCAGGAGGGACCTGGAGAAGCGAcagaagaaggagagggagaggctaCTGCTGAGGAAACGAGAGATGGATAGCATGCTCTTTGGAGatgaGATGCCTCCTGACCACCCCCTACAGCCCTTCAGAGAGTACTACACACAGGCAGAGCGCTCACTACCAGCCTTAATACAGATACGGAGAGAGTGGGACCTCTGTCTGGTCTCAGTGGACCACCCAGACGGCACCACGGTCCCCCAGGACTGGGTCTTACCACAATGCCCCACAGACGAGATTTGGGCCACAGCCCTGGACCGAGGGGACTGCCTCGGACCCTGACTGACGCCCAAATTGGCTCTGGAAAGGACTGGTCATTTGTTAGCACTGTATTCAGCAAGTTACTGCAACAAGACCTGCTGGAGAAGTGAAACAAGAGTGAAATTGGTTTTCTTTTAAGGATTTCAAAATCAGTTCTTAATTTTACAAACAGCTATGTGGTAGTTGTTCTCTCCAACTGATATTTGACTGAATTTGAAATCCTATTTATCAGGAATTCTGTATTTTCTGAAGTCAATAAATATTTGTTATTCCTGCCTG
>XM_036964103.1
ACGTGTACTATATCCGGTGTGTGACGTCAACTTGTAAACATGGTCGCTCCCGGCGTTCAACAGtgtcgttagctagctaaatacatttgaaaacaacCGAGTTTATTATTTTCCACAGTATCACGCCTGGATGGATAAACCAACGTTCCAGTCTACGTCGGGAGGACGGCAGCACCCAGTTTCTAACACCGGAGGTCCCGATACTTTTTACCTTAGAGGGGGACCTACATATCTCGGACCGCAGCCGATACAACCACCACCAGCGCAAGAGCTGAAGCTGGCTGCTGACACGGTGCTCTGTGAAGTGAGGAAGAAGCAGGCAGATGCCAAGAGGATGCTGGACATCCTCAGGTCACTGGAGAAGCTACGCAAACTCAGGAAGGAGGCAGCCTCCAGGAAAGGGATCTTCCCGGAGAAAGAAGCCGATCAAGCATTTGATGAGCTGGTGGAGCGCCTGCGTGCACTGATCAGGAAGAGGACAGGGGTGTATGGGGCAGAGGAGAACGCCCTGCGGGTGATGCTGGAGAGCGAGCAGGAGGAGGAGCGCAGGAGGGACCTGGAGAAGCGAcagaagaaggagagggagaggctaCTGCTGAGGAAACGAGAGATGGATAGCATGCTCTTTGGAGatgaGATGCCTCCTGACCACCCCCTACAGCCCTTCAGAGAGTACTACACACAGGCAGAGCGCTCACTACCAGCCTTAATACAGATACGGAGAGAGTGGGACCTCTGTCTGGTCTCAGTGGACCACCCAGACGGCACCACGGTCCCCCAGGACTGGGTCTTACCACAATGCCCCACAGACGAGATTTGGGCCACAGCCCTGGACCGAGGGGACTGCCTCGGACCCTGACTGACGCCCAAATTGGCTCTGGAAAGGACTGGTCATTTGTTAGCACTGTATTCAGCAAGTTACTGCAACAAGACCTGCTGGAGAAGTGAAACAAGAGTGAAATTGGTTTTCTTTTAAGGATTTCAAAATCAGTTCTTAATTTTACAAACAGCTATGTGGTAGTTGTTCTCTCCAACTGATATTTGACTGAATTTGAAATCCTATTTATCAGGAATTCTGTATTTTCTGAAGTCAATAAATATTTGTTATTCCTGCCTG

Function

NR:

description
programmed cell death protein 7 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964102.1 False 2279 mRNA 0.51 5 42642904 42646488
XM_036964103.1 True 1117 mRNA 0.51 5 42642904 42646490

Neighbor

gene id symbol gene type direction distance location
ubap1lb LOC106562636 coding downstream 651 42627022 ~ 42642253 (-)
LOC110513924 rasl12 coding downstream 19597 42616181 ~ 42958849 (-)
LOC118944394 LOC106587699 coding downstream 34038 42603751 ~ 42608866 (-)
LOC118944434 NA coding downstream 77214 42564249 ~ 42565690 (-)
LOC110526673 LOC106562627 coding downstream 88395 42551212 ~ 42554509 (-)
LOC118936599 LOC106562638 coding upstream 1275 42647765 ~ 42668743 (-)
LOC110526688 ankdd1a coding upstream 40390 42686880 ~ 42708753 (-)
LOC118944567 NA coding upstream 84756 42731246 ~ 42733570 (-)
LOC110526693 LOC106587688 coding upstream 99024 42745514 ~ 42769251 (-)
LOC110526696 LOC106562729 coding upstream 260179 42906669 ~ 42916825 (-)
G2031519 NA non-coding downstream 51039 42591575 ~ 42591865 (-)
G2031518 NA non-coding downstream 51403 42591273 ~ 42591501 (-)
G2031332 NA non-coding downstream 54257 42588338 ~ 42588647 (-)
G2031357 NA non-coding downstream 55050 42587601 ~ 42587854 (-)
G2031538 NA non-coding upstream 96143 42742633 ~ 42743952 (-)
G2031638 NA non-coding upstream 223607 42870097 ~ 42870520 (-)
G2031647 NA non-coding upstream 264627 42911117 ~ 42911423 (-)
G2031656 NA non-coding upstream 283740 42930230 ~ 42932519 (-)
G2031343 NA other downstream 84001 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 181589 42459257 ~ 42461315 (-)
G2031259 NA other downstream 272995 42368254 ~ 42369909 (-)
G2031225 NA other downstream 296179 42343282 ~ 42346725 (-)
G2031974 NA other upstream 538146 43184636 ~ 43185724 (-)
LOC110506858 LOC106562715 other upstream 545208 43180007 ~ 43198177 (-)
G2032150 NA other upstream 922670 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 1232703 43879193 ~ 43881732 (-)
LOC110526988 LOC106587743 other upstream 1253010 43896015 ~ 43949012 (-)

Expression


Co-expression Network