spg21 (spg21)


Basic Information

Item Value
gene id spg21
gene name spg21
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42674297 ~ 42681389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963151.1
aaggaagtaATTTAAGAATGTTGAAACACGCCCCTGAGCATCACGGAAGTGCGTGCAAGTAATGTCATATGACTTGTTCAGAACGAGAAATAAAATGTTGCTAATCTGTGGATAAAAGTGGACCTTAACGGTGAATGATATCCAAAGCAAACACGAAATGGAGGAGATAAGAATATCTCCTGATTACAACTGGTTCAGAAGCACAGTGCCACTTAAAAAAATTATAGTGGACGACGATGACAGCAAGGTGTGGTCCTTGTATGACGCAGGCCCAAAGAGCATCAGGTGTCCCATCATATTCCTTCCCCCTGTGAGTGGGACAGCAGAGGTGTTCTTCCAGCAGGTCTTAGCCCTGACAGGCTGGGGCTACAGAGTCATCTCActGCAGTATCCTGTTTATTGGGATCTCTTGGAGTTCTGTGATGGATTTCGGAAGCTTCTTGATCACTTGCATTTGGACAAGGTCCATCTATTTGGTGCTTCTCTGGGCGGCTTCCTGGCCCAGAAGTTTGCCGAGCACACACACAAGTCTCCCAGAGTCCACTCTCTGATCCTGTGCAACTCCTTCAGTGACACCACCATCTTCAACCAGACATTGACAGCCAACAGCTTTTGGTTGATGCCCGCCTTCATGTTGAAGAAGATTGTCCTGGGGAACTTCGCTAAAGGACCTGTCGACCCCAAGATGGCCGACGCAATCGACTTTATGGTCGACAGAcTGGAGAGCCTGAACCAGGGTGAGCTAGCCTCCAGACTAACACTCAACTGTCAGAACTCCTACGTGGAGCCTCACAAGATAAAGGACCTGGCTGTCACCATTATGGATGTGTTCGACCAGAGTGCCCTGTCACACGAGGCGAAAGAGGAAATGTATAAGCTGTATCCAAATGCCAGACGGGCTCACCTCAAAACGGGTGGAAACTTCCCCTACCTGTGTAGGAGTGCTGAGGTCAACCTATACATACAGATCCAATGgctgtttcctcctctcctcactctgcTGTCGTCCGCCTCCGCCATGTTGTTCTCAACACCACTTTATTTCAATATTCACCTGCGGCAGTTCCACGGGACGCGGTACGCCGCCATCAACTCGGACATGGTGAGCGCCGAGGAGCTGGAGGTGCAGAAGAGCCACCTGGTGAATAGCGCCAACGACCAATGACGAGACTGTTACCCAgcaccttctcctctctcccagctctGACCGGCAGGCCAGAACCATAGAATCGGATTGGCTGATTCTGTGGGGCAGAACTATGGGAACTACGTTTCCCTGACCAGCAAAACAGCCAAGAAAAAGTCAACCATAGAAATTAGAATGACTCAATTCTATTTCTGTATTTCTATGATCTCAACCATCATCACCCAGTCACCACGACTGGTCACACGGATCTATGGATCCACTTGTTAAAAAAGGTCATCTCTTCACCTGATCTTCTTTCTGTTTTTTCTACGATATTGAATACAATCAATCCACAAGTTGAACTGATACTATTTTTACTttacagttaaaaatatatattttaattatcACTGTTACTGTAAATAGAGCGTAATTGGCTACGTTGCTTTGAGAGAAGAAACGCCATGTTATGAACCTTTTGCCTTATGTGATATAAATCTCATGCATTTAATTGATGTTGCACTTTTGAATTCCATGTTTTTCCTTCTATGTTTATGGTTAACTCTGCCAACCGTGGCGATACTTGGTAAGCTAGAAAACCTGCACTGATTAGATATACAGCGGAGGATGTTAGTCAGAAGAAATAATGTTAAATTTAATTTGTAATTTAATAAAGCCTTCTTGAAAACATG
>XM_036963152.1
aaggaagtaATTTAAGAATGTTGAAACACGCCCCTGAGCATCACGGAAGTGCGTGCAAGTAATGTCATATGACTTGTTCAGAACGAGAAATAAAATGTTGCTAATCTGTGGATAAAAGTGGACCTTAACGGTGAATGATATCCAAAGCAAACACGAAATGGAGGAGATAAGAATATCTCCTGATTACAACTGGTTCAGAAGCACAGTGCCACTTAAAAAAATTATAGTGGACGACGATGACAGCAAGGTGTGGTCCTTGTATGACGCAGGCCCAAAGAGCATCAGGTGTCCCATCATATTCCTTCCCCCTGTGAGTGGGACAGCAGAGGTGTTCTTCCAGCAGGTCTTAGCCCTGACAGGCTGGGGCTACAGAGTCATCTCActGCAGTATCCTGTTTATTGGGATCTCTTGGAGTTCTGTGATGGATTTCGGAAGCTTCTTGATCACTTGCATTTGGACAAGGTCCATCTATTTGGTGCTTCTCTGGGCGGCTTCCTGGCCCAGAAGTTTGCCGAGCACACACACAAGTCTCCCAGAGTCCACTCTCTGATCCTGTGCAACTCCTTCAGTGACACCACCATCTTCAACCAGACATTGACAGCCAACAGCTTTTGGTTGATGCCCGCCTTCATGTTGAAGAAGATTGTCCTGGGGAACTTCGCTAAAGGACCTGTCGACCCCAAGATGGCCGACGCAATCGACTTTATGGTCGACAGAcTGGAGAGCCTGAACCAGGGTGAGCTAGCCTCCAGACTAACACTCAACTGTCAGAACTCCTACGTGGAGCCTCACAAGATAAAGGACCTGGCTGTCACCATTATGGATGTGTTCGACCAGAGTGCCCTGTCACACGAGGCGAAAGAGGAAATGTATAAGCTGTATCCAAATGCCAGACGGGCTCACCTCAAAACGGGTGGAAACTTCCCCTACCTGTGTAGGAGTGCTGAGGTCAACCTATACATACAGATTCACCTGCGGCAGTTCCACGGGACGCGGTACGCCGCCATCAACTCGGACATGGTGAGCGCCGAGGAGCTGGAGGTGCAGAAGAGCCACCTGGTGAATAGCGCCAACGACCAATGACGAGACTGTTACCCAgcaccttctcctctctcccagctctGACCGGCAGGCCAGAACCATAGAATCGGATTGGCTGATTCTGTGGGGCAGAACTATGGGAACTACGTTTCCCTGACCAGCAAAACAGCCAAGAAAAAGTCAACCATAGAAATTAGAATGACTCAATTCTATTTCTGTATTTCTATGATCTCAACCATCATCACCCAGTCACCACGACTGGTCACACGGATCTATGGATCCACTTGTTAAAAAAGGTCATCTCTTCACCTGATCTTCTTTCTGTTTTTTCTACGATATTGAATACAATCAATCCACAAGTTGAACTGATACTATTTTTACTttacagttaaaaatatatattttaattatcACTGTTACTGTAAATAGAGCGTAATTGGCTACGTTGCTTTGAGAGAAGAAACGCCATGTTATGAACCTTTTGCCTTATGTGATATAAATCTCATGCATTTAATTGATGTTGCACTTTTGAATTCCATGTTTTTCCTTCTATGTTTATGGTTAACTCTGCCAACCGTGGCGATACTTGGTAAGCTAGAAAACCTGCACTGATTAGATATACAGCGGAGGATGTTAGTCAGAAGAAATAATGTTAAATTTAATTTGTAATTTAATAAAGCCTTCTTGAAAACATG
>NM_001165163.1
ATCACGGAAGTGCGTGCAAGTAATGTCATATGACTTGTTCAGAACGAGAAATAAAATGTTGCTAATCTGTGGATAAAAGTGGACCTTAACGGTGAATGATATCCAAAGCAAACACGAAATGGAGGAGATAAGAATATCTCCTGATTACAACTGGTTCAGAAGCACAGTGCCACTTAAAAAAATTATAGTGGACGACGATGACAGCAAGGTGTGGTCCTTGTATGACGCAGGCCCAAAGAGCATCAGGTGTCCCATCATATTCCTTCCCCCTctGCAGTATCCTGTTTATTGGGATCTCTTGGAGTTCTGTGATGGATTTCGGAAGCTTCTTGATCACTTGCATTTGGACAAGGTCCATCTATTTGGTGCTTCTCTGGGCGGCTTCCTGGCCCAGAAGTTTGCCGAGCACACACACAAGTCTCCCAGAGTCCACTCTCTGATCCTGTGCAACTCCTTCAGTGACACCACCATCTTCAACCAGACATTGACAGCCAACAGCTTTTGGTTGATGCCCGCCTTCATGTTGAAGAAGATTGTCCTGGGGAACTTCGCTAAAGGACCTGTCGACCCCAAGATGGCCGACGCAATCGACTTTATGGTCGACAGAcTGGAGAGCCTGAACCAGGGTGAGCTAGCCTCCAGACTAACACTCAACTGTCAGAACTCCTACGTGGAGCCTCACAAGATAAAGGACCTGGCTGTCACCATTATGGATGTGTTCGACCAGAGTGCCCTGTCACACGAGGCGAAAGAGGAAATGTATAAGCTGTATCCAAATGCCAGACGGGCTCACCTCAAAACGGGTGGAAACTTCCTACCTGTGTAGGAGTGCTGAGGTCAACCTATACATACAGATTCACCTGCGGCAGTTCCACGGGACGCGGTACGCCGCCATCAACTCGGACATGGTGAGCGCCGAGGAGCTGGAGGTGCAGAAGAGCCACCTGGTGAATAGCGCCAACGACCAATGACGAGACTGTTACCCAgcaccttctcctctctcccagctctGACCGGCAGGCCAGAACCATAGAATCGGATTGGCTGATTCTGTGGGGCAGAACTATGGGAACTACGTTTCCCTGACCAGCAAAACAGCCAAGAAAAAGTCAACCATAGAAATTAGAATGACTCAATTCTATTTCTGTATTTCTATGATCTCAACCATCATCACCCAGTCACCACGACTGGTCACACGGATCTATGGATCCACTTGTTAAAAAAGGTCATCTCTTCACCTGATCTTCTTTCTGTTTTTTCTACGATATTGAATACAATCAATCCACAAGTTGAACTGATACTATTTTTACTttacagttaaaaatatatattttaattatcACTGTTACTGTAAATAGAGCGTAATTGGCTACGTTGCTTTGAGAGAAGAAACGCCATGTTATGAACCTTTTGCCTTATGTGATATAAATCTCATGCATTTAATTGATGTTGCACTTTTGAATTCCATGTTTTTCCTTCTATGTTTATGGTTAACTCTGCCAACCGTGGCGATACTTGGTAAGCTAGAAAACCTGCACTGATTAGATATACAGCGGAGGATGTTAGTCAGAAGAAATAATGTTAAATTTAATTTGTAATTTAATAAAGCCTTCTTG
>TU2323563
tgctaCTTGTTTGTGTGCGCGTTTCATTTGGTTTAAAGGTGTTCGACCAGAGTGCCCTGTCACACGAGGCGAAAGAGGAAATGTATAAGCTGTATCCAAATGCCAGACGGGCTCACCTCAAAACGGGTGGAAACTTCCCCTACCTGTGTAGGAGTGCTGAGGTCAACCTATACATACAGATTCACCTGCGGCAGTTCCACGGGACGCGGTACGCCGCCATCAACTCGGACATGGTGAGCGCCGAGGAGCTGGAGGTGCAGAAGAGCCACCTGGTGAATAGCGCCAACGACCAATGACGAGACTGTTACCCAgcaccttctcctctctcccagctctGACCGGCAGGCCAGAACCATAGAATCGGATTGGCTGATTCTGTGGGGCAGAACTATGGGAACTACGTTTCCCTGACCAGCAAAACAGCCAAGAAAAAGTCAACCATAGAAATTAGAATGACTCAATTCTATTTCTGTATTTCTATGATCTCAACCATCATCACCCAGTCACCACGACTGGTCACACGGATCTATGGATCCACTTGTTAAAAAAGGTCATCTCTTCACCTGATCTTCTTTCTGTTTTTTCTACGATATTGAATACAATCAATCCACAAGTTGAACTGATACTATTTTTACTttacagttaaaaatatatattttaattatcACTGTTACTGTAAATAGAGCGTAATTGGCTACGTTGCTTTGAGAGAAGAAACGCCATGTTATGAACCTTTTGCCTTATGTGATATAAATCTCATGCATTTAATTGATGTTGCACTTTTGAATTCCATGTTTTTCCTTCTATGTTTATGGTTAACTCTGCCAACCGTGGCGATACTTGGTAAGCTAGAAAACCTGCACTGATTAGATATACAGCGGAGGATGTTAGTCAGAAGAAATAATGTTAAATTTAATTTGTAATTTAATAAAGCCTTCTTGAAAA

Function

symbol description
spg21 Predicted to enable CD4 receptor binding activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol and trans-Golgi network transport vesicle. Human ortholog(s) of this gene implicated in Mast syndrome and hereditary spastic paraplegia. Orthologous to human SPG21 (SPG21 abhydrolase domain containing, maspardin).

NR:

description
PREDICTED: maspardin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963151.1 False 1818 mRNA 0.45 10 42674297 42681389
XM_036963152.1 False 1737 mRNA 0.45 9 42674297 42681389
NM_001165163.1 False 1616 mRNA 0.45 10 42674336 42681381
TU2323563 True 945 TUCP 0.42 2 42678213 42681385
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513925 LOC106562633 coding upstream 47266 42624304 ~ 42627031 (+)
si:cabz01068815.1 LOC106587700 coding upstream 56724 42609361 ~ 42617573 (+)
LOC118936412 LOC106562630 coding upstream 68898 42591623 ~ 42605399 (+)
LOC110526666 prc1 coding upstream 87499 42576377 ~ 42586798 (+)
LOC110526664 LOC106562628 coding upstream 98119 42565631 ~ 42576178 (+)
LOC118944566 LOC106587688 coding downstream 49207 42726882 ~ 42748573 (+)
LOC110511523 pcsk6 coding downstream 120481 42801870 ~ 42886938 (+)
LOC110526703 tm6sf1 coding downstream 240498 42921887 ~ 42930481 (+)
LOC110515300 LOC106583399 coding downstream 403243 43084632 ~ 43160907 (+)
LOC110506077 LOC106562716 coding downstream 489289 43170678 ~ 43179902 (+)
G2031379 NA non-coding upstream 24668 42647769 ~ 42649629 (+)
G2031358 NA non-coding upstream 83906 42590021 ~ 42590391 (+)
G2031198 NA non-coding upstream 85640 42588359 ~ 42588657 (+)
G2031197 NA non-coding upstream 86450 42586831 ~ 42587847 (+)
G2031405 NA non-coding downstream 22452 42703841 ~ 42708770 (+)
G2031417 NA non-coding downstream 43553 42724942 ~ 42737368 (+)
G2031477 NA non-coding downstream 197346 42878735 ~ 42880384 (+)
G2031381 LOC106562638 other upstream 19801 42651759 ~ 42654496 (+)
G2031110 NA other upstream 353896 42319310 ~ 42320401 (+)
LOC110526920 scg3 other upstream 951916 41688562 ~ 41722381 (+)
LOC110512697 LOC106562529 other upstream 1031313 41600933 ~ 41643474 (+)
G2029990 NA other upstream 1760819 40912935 ~ 40913478 (+)
G2031390 NA other downstream 4249 42685638 ~ 42687128 (+)
G2032117 NA other downstream 857601 43538990 ~ 43539362 (+)
LOC110506879 LOC106587845 other downstream 1095198 43774037 ~ 43777549 (+)
G2033013 NA other downstream 1949086 44630475 ~ 44630763 (+)
LOC110516695 LOC106562481 other downstream 2281681 44963034 ~ 44971924 (+)

Expression

spg21(spg21) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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spg21(spg21) Expression in each Bioproject

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spg21(spg21) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network