Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110511523 |
| gene name | pcsk6 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 42801870 ~ 42886938 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pcsk6 | Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human PCSK6 (proprotein convertase subtilisin/kexin type 6). |
| description |
|---|
| PREDICTED: proprotein convertase subtilisin/kexin type 6-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036963436.1 | False | 2901 | mRNA | 0.53 | 19 | 42801870 | 42867805 |
| XM_036963435.1 | False | 3031 | mRNA | 0.54 | 20 | 42801871 | 42878245 |
| XM_036963434.1 | False | 4632 | mRNA | 0.49 | 21 | 42801872 | 42886938 |
| TU2323657 | True | 1500 | lncRNA | 0.43 | 3 | 42869100 | 42886342 |
42,780,000
42,790,000
42,800,000
42,810,000
42,820,000
42,830,000
42,840,000
42,850,000
42,860,000
42,870,000
42,880,000
42,890,000
42,900,000
42,910,000
42,920,000
42,930,000
42,940,000
42,950,000
NC_048590.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944566 | LOC106587688 | coding | upstream | 61319 | 42726882 ~ 42748573 (+) |
| spg21 | spg21 | coding | upstream | 120481 | 42674297 ~ 42681389 (+) |
| LOC110513925 | LOC106562633 | coding | upstream | 174839 | 42624304 ~ 42627031 (+) |
| si:cabz01068815.1 | LOC106587700 | coding | upstream | 184297 | 42609361 ~ 42617573 (+) |
| LOC118936412 | LOC106562630 | coding | upstream | 196471 | 42591623 ~ 42605399 (+) |
| LOC110526703 | tm6sf1 | coding | downstream | 34949 | 42921887 ~ 42930481 (+) |
| LOC110515300 | LOC106583399 | coding | downstream | 197694 | 43084632 ~ 43160907 (+) |
| LOC110506077 | LOC106562716 | coding | downstream | 283740 | 43170678 ~ 43179902 (+) |
| LOC110506863 | LOC106594052 | coding | downstream | 322320 | 43209258 ~ 43425863 (+) |
| LOC110515557 | efl1 | coding | downstream | 552322 | 43439260 ~ 43535306 (+) |
| G2031417 | NA | non-coding | upstream | 64502 | 42724942 ~ 42737368 (+) |
| G2031405 | NA | non-coding | upstream | 93100 | 42703841 ~ 42708770 (+) |
| G2031379 | NA | non-coding | upstream | 152241 | 42647769 ~ 42649629 (+) |
| G2031358 | NA | non-coding | upstream | 211479 | 42590021 ~ 42590391 (+) |
| G2031486 | NA | non-coding | downstream | 20487 | 42907425 ~ 42908463 (+) |
| G2031499 | LOC106587709 | non-coding | downstream | 38507 | 42925445 ~ 42926116 (+) |
| G2031500 | LOC106587709 | non-coding | downstream | 39783 | 42926721 ~ 42927168 (+) |
| G2031496 | NA | non-coding | downstream | 45930 | 42932868 ~ 42934261 (+) |
| G2031508 | NA | non-coding | downstream | 61553 | 42948491 ~ 42952583 (+) |
| G2031390 | NA | other | upstream | 114742 | 42685638 ~ 42687128 (+) |
| G2031381 | LOC106562638 | other | upstream | 147374 | 42651759 ~ 42654496 (+) |
| G2031110 | NA | other | upstream | 481469 | 42319310 ~ 42320401 (+) |
| LOC110526920 | scg3 | other | upstream | 1079489 | 41688562 ~ 41722381 (+) |
| G2032117 | NA | other | downstream | 652052 | 43538990 ~ 43539362 (+) |
| LOC110506879 | LOC106587845 | other | downstream | 889649 | 43774037 ~ 43777549 (+) |
| G2033013 | NA | other | downstream | 1743537 | 44630475 ~ 44630763 (+) |
| LOC110516695 | LOC106562481 | other | downstream | 2076132 | 44963034 ~ 44971924 (+) |
| G2033166 | NA | other | downstream | 2085954 | 44972892 ~ 44973711 (+) |
