LOC110526696 (LOC106562729)


Basic Information

Item Value
gene id LOC110526696
gene name LOC106562729
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42906669 ~ 42916825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963577.1
agagcgagaaagaaagcaGTAACAAACACTGGCCCATTAGTCTTTGAAAAATTCGCAATAAAACGCAAAAATGCGTCATTAATATTTTCCACGGTTATCAATCGTAAAAGCCAATAAGGACAGCGGTACGAAATGGCGACTGGGGGTGGTGGCATCGGTCCACCGTCCAATCTTGAAGGACGAGCATCAAATTTCGCCCATTCTGGAGCGGGAAGAAATGCTGGAGTGGCCTCGAATATGCCAGTCCCCGTGGTCGCAGCACCAATCTCACCCCCGTCGGGTGGCCTTCACCGGGAGCCTATGTACAACTGGCAGGCCACGAAGAGCTCAGTAAAAGAGCGCTTCGCGTTTCTCTTCAATAACGAACTGCTCAGTGACGTTAGGTTTATTGTCGGTAAAGGTAGACAGGCGCAGAGGATACCAGCGCATAAATTCGTCCTAGCTGCTGGTAGTGCAGTATTTGACGCCATGTTCAACGGGGGAATGGCCACCACCTCGGCCGAGATagagttacctgatgtggaaccTGCAGCCTTCCTAGCCTTGctaaggttccTGTACTCTGACGAGGTCCACATAGGACCAGAGACGGTGATGACCACTCTGTACACGGCGAAGAAATATGCCGTTCCTGCTCTAGAGACTCAGTGTGTGGAGTTCCTTACCAAACACCTCAGGGCAGACAATGCATTCATGCTACTCACTCAGGCCAGACTATTCGATGAGCCTCAGCTTGCCAGCCTCTGTTTGGAAACAATAGACAAAAGCACCGGTGATGCCATAAACGCAGAAGGATTCACTGACATTGACCTAGATACGCTGTGTGCAGTGCTGGAGAGAGACACCCTGGGGATTCGCGAAAACCGTCTATTTGGTGCGGTGGTGCGCTGGGCGGATGCCGAGTGTTACAGGCAACAGCTTCCCCTCACCTCTGAGAACAAACAGAAGGTTCTGGGCAAGGCCCTAACCCTCATCCGCTTCCCACTCATGACTGTGGAGGAGTTTGCTGCGGGGCCTGCCCAGTCTGGAATATTGTTCGATCGGGAGGTGGTAAATCTGTTTTTACACTTTACAGTAAACCCCAAGCCGCGGGTAGACTACATTGACAGGCCCCGCTGCTGCCTCCGAGGAAAGGAGGGCAGCATTAGTAGGTTCCAGCAGGTTGAAAGTCGCTGGGGATACAGTGGCACCAGTGACAGGATCAGATTTAATGTAAATAGAAGAATATCAGTGGTGGGTTTCGGACTGTATGGCTCGATCCACGGACCTACGGACTATCAGGTTAATATACAGATTATTGAGAGTGACAAAAGCCTAACGCTAGCAACAAACGACACGGGCTTCAGCTGTGACGGAACAGCCAACACGTTCAGAGTCATGTTCAAGGAGCCGGTGGAGATTTTACCCAACGTTAGTTACACCGCTTGTGCAACCTTAAAGGGCCCGGACTCTCACTACGGCACTAAAGGGTTAAAGAAAGTGAGCCAGGAGTCCGCCACGGGGACCAAGACCACCTTTTTCTTTTTCAGCTCTCCTGGGAACAACAACGGCACGTCAGTGGAGGACGGACAGATCCCAGAGATCATCTACTACACCTAGTACTACACCTAGACAACTCCTCACCACACCTGGGTCCTGTAGAACCATGGACCCGGACTCGTCCATGAAACATTTTTGCATTTTGGTTTCCGTTGCCGCACTTAAACGAAAAAAAAATTCTGTTGCTTGTACTATTAAACATGGATCCCTAGTAAACACGACTGGGTTGTGTTCGGTAGGCAAACTTGTTGCAGCTAGAAACGCCATGAATAGAGATGACGTGATGACTCATTGCGGCATATTTTTTCTAGGTAATGTATTTCTTTCTGAACGTTCCGCAATGTTGTTCCCTGCTGAACAATGCCCTGGGTCAGGTAGACACCATCTACCACACCTAAACCAGGGGCCATGTTCTGTAGGCATAGAATGGAGGAAACGGAGTGCGACTGGGAGGTACTACCTGAGCTTGTCCAATAAGAAGCACTTGTTTTCtgttccaaaatgttttgctatggtGTGCTCCAATGAGAACTACCTATGAGGTTGGGTAAGTCTGAGAGTGGAATGGAATGGCGCCCTGCAGGGAGGAttgtagcctggttccagatctgtttgtgctctggCTGAGTCCATTTCTGTCGTTGTCCAAGACGATTCCAGAAGGAGTTGGCAAAAGGGCAGAAACAGACCGACACCCAGGCTAGAGGGATTGTGCCTTCTGCTGTTCAGGAACGGATACAAAGACTTTTGGAAACCAAAAGGAGTGGAGTAGTGTCGGTCTAGTCTGCTGGTTTGTGAACTTGGATGTGTGCGAGATCAGTGGAtgctggtgggaggaactataggaggacaggctcattgtaatggcaggAATGGAATAAATGGTAAGGAGTTAATGTGGTTTCCATATTTTTGATACCGTTaaatttattccattccagccattacagtgagcctgtcctcctatagctcctcccaccagcctccactgtgtgAGACATTTGACATAATAGAACTGTAACTCAAAAAGGATTGTTACATGTAGAGATGTATAATAGGACTGTGGACTGGCTGGAATCTGGGTGATGGTAGACAATGACACAGTTGGAAATGTTCTATATTCTACTACTGGCTTTCTGTGGTCCGTACCTTCATCAGGGAATCGCTCACTACAGTGCTGGTGTCTGGAGTGTATTCACTAGACACTGAAACGGGAAGGGACTACCTGAAGAAATTCGTTTTCATTGCAAAACGTTTAGCTATGGTGTGCACTTATGAATACACCCTATGTAGTGTAAAATCGCAGAGTGCCCTTCACTGTTCGATCAATGTCATTTCGTAGTTTGAGTGCTGACGTGGTAAAAGTTCCACTGTTTTCGTGCTTAACCTTCATTGATTATATTTGCAGGTGGGGTTTTTCATGTGCAAATAAAATCTTAACTAGTGACGTCTGAGTATTTGTGCGTATGTTAAAGTTTGCCAATGTATGTTACATGCTTTAATTTGTTTCCTTAGCATGTCATCTAAGAGTAAGACAGGATAATATTGTGACTGTTAATTGCTGAAACAAGtggaaatgtatatttttatCTCTCTGCAATAAAGTATGTTGACACCAATGA
>XM_036963578.1
gagagcgagaaagaaagcaGTAACAAACACTGGCCCATTAGTCTTTGAAAAATTCGCAATAAAACGCAAAAATGCGTCATTAATATTTTCCACGGTTATCAATCGTAAAAGCCAATAAGGACAGCGGTACGAAATGGCGACTGGGGGTGGTGGCATCGGTCCACCGTCCAATCTTGAAGGACGAGCATCAAATTTCGCCCATTCTGGAGCGGGAAGAAATGCTGGAGTGGCCTCGAATATGCCAGTCCCCGTGGTCGCAGCACCAATCTCACCCCCGTCGGGTGGCCTTCACCGGGAGCCTATGTACAACTGGCAGGCCACGAAGAGCTCAGTAAAAGAGCGCTTCGCGTTTCTCTTCAATAACGAACTGCTCAGTGACGTTAGGTTTATTGTCGGTAAAGGTAGACAGGCGCAGAGGATACCAGCGCATAAATTCGTCCTAGCTGCTGGTAGTGCAGTATTTGACGCCATGTTCAACGGGGGAATGGCCACCACCTCGGCCGAGATagagttacctgatgtggaaccTGCAGCCTTCCTAGCCTTGctaaggttccTGTACTCTGACGAGGTCCACATAGGACCAGAGACGGTGATGACCACTCTGTACACGGCGAAGAAATATGCCGTTCCTGCTCTAGAGACTCAGTGTGTGGAGTTCCTTACCAAACACCTCAGGGCAGACAATGCATTCATGCTACTCACTCAGGCCAGACTATTCGATGAGCCTCAGCTTGCCAGCCTCTGTTTGGAAACAATAGACAAAAGCACCGGTGATGCCATAAACGCAGAAGGATTCACTGACATTGACCTAGATACGCTGTGTGCAGTGCTGGAGAGAGACACCCTGGGGATTCGCGAAAACCGTCTATTTGGTGCGGTGGTGCGCTGGGCGGATGCCGAGTGTTACAGGCAACAGCTTCCCCTCACCTCTGAGAACAAACAGAAGGTTCTGGGCAAGGCCCTAACCCTCATCCGCTTCCCACTCATGACTGTGGAGGAGTTTGCTGCGGTAAACCCCAAGCCGCGGGTAGACTACATTGACAGGCCCCGCTGCTGCCTCCGAGGAAAGGAGGGCAGCATTAGTAGGTTCCAGCAGGTTGAAAGTCGCTGGGGATACAGTGGCACCAGTGACAGGATCAGATTTAATGTAAATAGAAGAATATCAGTGGTGGGTTTCGGACTGTATGGCTCGATCCACGGACCTACGGACTATCAGGTTAATATACAGATTATTGAGAGTGACAAAAGCCTAACGCTAGCAACAAACGACACGGGCTTCAGCTGTGACGGAACAGCCAACACGTTCAGAGTCATGTTCAAGGAGCCGGTGGAGATTTTACCCAACGTTAGTTACACCGCTTGTGCAACCTTAAAGGGCCCGGACTCTCACTACGGCACTAAAGGGTTAAAGAAAGTGAGCCAGGAGTCCGCCACGGGGACCAAGACCACCTTTTTCTTTTTCAGCTCTCCTGGGAACAACAACGGCACGTCAGTGGAGGACGGACAGATCCCAGAGATCATCTACTACACCTAGTACTACACCTAGACAACTCCTCACCACACCTGGGTCCTGTAGAACCATGGACCCGGACTCGTCCATGAAACATTTTTGCATTTTGGTTTCCGTTGCCGCACTTAAACGAAAAAAAAATTCTGTTGCTTGTACTATTAAACATGGATCCCTAGTAAACACGACTGGGTTGTGTTCGGTAGGCAAACTTGTTGCAGCTAGAAACGCCATGAATAGAGATGACGTGATGACTCATTGCGGCATATTTTTTCTAGGTAATGTATTTCTTTCTGAACGTTCCGCAATGTTGTTCCCTGCTGAACAATGCCCTGGGTCAGGTAGACACCATCTACCACACCTAAACCAGGGGCCATGTTCTGTAGGCATAGAATGGAGGAAACGGAGTGCGACTGGGAGGTACTACCTGAGCTTGTCCAATAAGAAGCACTTGTTTTCtgttccaaaatgttttgctatggtGTGCTCCAATGAGAACTACCTATGAGGTTGGGTAAGTCTGAGAGTGGAATGGAATGGCGCCCTGCAGGGAGGAttgtagcctggttccagatctgtttgtgctctggCTGAGTCCATTTCTGTCGTTGTCCAAGACGATTCCAGAAGGAGTTGGCAAAAGGGCAGAAACAGACCGACACCCAGGCTAGAGGGATTGTGCCTTCTGCTGTTCAGGAACGGATACAAAGACTTTTGGAAACCAAAAGGAGTGGAGTAGTGTCGGTCTAGTCTGCTGGTTTGTGAACTTGGATGTGTGCGAGATCAGTGGAtgctggtgggaggaactataggaggacaggctcattgtaatggcaggAATGGAATAAATGGTAAGGAGTTAATGTGGTTTCCATATTTTTGATACCGTTaaatttattccattccagccattacagtgagcctgtcctcctatagctcctcccaccagcctccactgtgtgAGACATTTGACATAATAGAACTGTAACTCAAAAAGGATTGTTACATGTAGAGATGTATAATAGGACTGTGGACTGGCTGGAATCTGGGTGATGGTAGACAATGACACAGTTGGAAATGTTCTATATTCTACTACTGGCTTTCTGTGGTCCGTACCTTCATCAGGGAATCGCTCACTACAGTGCTGGTGTCTGGAGTGTATTCACTAGACACTGAAACGGGAAGGGACTACCTGAAGAAATTCGTTTTCATTGCAAAACGTTTAGCTATGGTGTGCACTTATGAATACACCCTATGTAGTGTAAAATCGCAGAGTGCCCTTCACTGTTCGATCAATGTCATTTCGTAGTTTGAGTGCTGACGTGGTAAAAGTTCCACTGTTTTCGTGCTTAACCTTCATTGATTATATTTGCAGGTGGGGTTTTTCATGTGCAAATAAAATCTTAACTAGTGACGTCTGAGTATTTGTGCGTATGTTAAAGTTTGCCAATGTATGTTACATGCTTTAATTTGTTTCCTTAGCATGTCATCTAAGAGTAAGACAGGATAATATTGTGACTGTTAATTGCTGAAACAAGtggaaatgtatatttttatCTCTCTGCAATAAAGTATGTTGACACCAATGA

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein 1-like isoform X2

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963577.1 False 3161 mRNA 0.47 8 42906669 42916824
XM_036963578.1 True 3099 mRNA 0.47 8 42906669 42916825

Neighbor

gene id symbol gene type direction distance location
LOC110526693 LOC106587688 coding downstream 137418 42745514 ~ 42769251 (-)
LOC118944567 NA coding downstream 173099 42731246 ~ 42733570 (-)
LOC110526688 ankdd1a coding downstream 197916 42686880 ~ 42708753 (-)
LOC118936599 LOC106562638 coding downstream 237926 42647765 ~ 42668743 (-)
LOC110526685 LOC106562637 coding downstream 260179 42642904 ~ 42646490 (-)
LOC110526700 LOC106587711 coding upstream 23332 42940157 ~ 42954704 (-)
LOC110526985 LOC106592271 coding upstream 47469 42964294 ~ 42987282 (-)
LOC118944425 LOC106562717 coding upstream 244943 43161768 ~ 43163012 (-)
LOC110506858 LOC106562715 coding upstream 263182 43180007 ~ 43198177 (-)
LOC110506867 LOC106587795 coding upstream 511833 43428658 ~ 43439196 (-)
G2031638 NA non-coding downstream 36149 42870097 ~ 42870520 (-)
G2031538 NA non-coding downstream 162717 42742633 ~ 42743952 (-)
ubap1lb LOC106562636 non-coding downstream 277251 42627022 ~ 42642253 (-)
G2031519 NA non-coding downstream 314804 42591575 ~ 42591865 (-)
G2031656 NA non-coding upstream 13405 42930230 ~ 42932519 (-)
G2031658 NA non-coding upstream 26317 42943142 ~ 42945042 (-)
G2031633 NA non-coding upstream 45371 42962196 ~ 42963888 (-)
G2031663 NA non-coding upstream 57284 42974109 ~ 42974393 (-)
G2031671 NA non-coding upstream 65956 42982781 ~ 42982999 (-)
LOC110513924 rasl12 other downstream 285123 42616181 ~ 42958849 (-)
G2031343 NA other downstream 347766 42557797 ~ 42558903 (-)
G2031286 LOC106562727 other downstream 445354 42459257 ~ 42461315 (-)
G2031259 NA other downstream 536760 42368254 ~ 42369909 (-)
G2031225 NA other downstream 559944 42343282 ~ 42346725 (-)
G2031974 NA other upstream 267811 43184636 ~ 43185724 (-)
G2032150 NA other upstream 652335 43569160 ~ 43570054 (-)
G2032544 tmc3 other upstream 962368 43879193 ~ 43881732 (-)
LOC110526988 LOC106587743 other upstream 982675 43896015 ~ 43949012 (-)

Expression


Co-expression Network