Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110515300 |
| gene name | LOC106583399 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 43084632 ~ 43160907 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036963689.1 | False | 4311 | mRNA | 0.44 | 11 | 43084632 | 43160907 |
| XM_036963690.1 | False | 4212 | mRNA | 0.44 | 9 | 43084632 | 43160907 |
| TU2324029 | False | 858 | lncRNA | 0.38 | 1 | 43160044 | 43160901 |
| TU2324028 | True | 429 | lncRNA | 0.40 | 1 | 43160473 | 43160901 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526703 | tm6sf1 | coding | upstream | 154151 | 42921887 ~ 42930481 (+) |
| LOC110511523 | pcsk6 | coding | upstream | 197694 | 42801870 ~ 42886938 (+) |
| LOC118944566 | LOC106587688 | coding | upstream | 344081 | 42726882 ~ 42748573 (+) |
| spg21 | spg21 | coding | upstream | 403243 | 42674297 ~ 42681389 (+) |
| LOC110513925 | LOC106562633 | coding | upstream | 457601 | 42624304 ~ 42627031 (+) |
| LOC110506077 | LOC106562716 | coding | downstream | 9771 | 43170678 ~ 43179902 (+) |
| LOC110506863 | LOC106594052 | coding | downstream | 48351 | 43209258 ~ 43425863 (+) |
| LOC110515557 | efl1 | coding | downstream | 278353 | 43439260 ~ 43535306 (+) |
| LOC118944556 | NA | coding | downstream | 398473 | 43559380 ~ 43567527 (+) |
| LOC110506869 | mex3b | coding | downstream | 431981 | 43592888 ~ 43597540 (+) |
| G2031679 | NA | non-coding | upstream | 92956 | 42991287 ~ 42991676 (+) |
| G2031516 | LOC106592318 | non-coding | upstream | 117785 | 42966280 ~ 42966847 (+) |
| G2031515 | LOC106592271 | non-coding | upstream | 119290 | 42962225 ~ 42965342 (+) |
| G2031514 | NA | non-coding | upstream | 122611 | 42961777 ~ 42962021 (+) |
| G2031508 | NA | non-coding | upstream | 132049 | 42948491 ~ 42952583 (+) |
| G2031778 | NA | non-coding | downstream | 4572 | 43165479 ~ 43165684 (+) |
| G2031781 | NA | non-coding | downstream | 8940 | 43169847 ~ 43170218 (+) |
| G2031792 | NA | non-coding | downstream | 39317 | 43200224 ~ 43200565 (+) |
| G2031818 | NA | non-coding | downstream | 110079 | 43270986 ~ 43271700 (+) |
| G2031863 | NA | non-coding | downstream | 238064 | 43398971 ~ 43399231 (+) |
| G2031390 | NA | other | upstream | 397504 | 42685638 ~ 42687128 (+) |
| G2031381 | LOC106562638 | other | upstream | 430136 | 42651759 ~ 42654496 (+) |
| G2031110 | NA | other | upstream | 764231 | 42319310 ~ 42320401 (+) |
| LOC110526920 | scg3 | other | upstream | 1362251 | 41688562 ~ 41722381 (+) |
| G2032117 | NA | other | downstream | 378083 | 43538990 ~ 43539362 (+) |
| LOC110506879 | LOC106587845 | other | downstream | 615680 | 43774037 ~ 43777549 (+) |
| G2033013 | NA | other | downstream | 1469568 | 44630475 ~ 44630763 (+) |
| LOC110516695 | LOC106562481 | other | downstream | 1802163 | 44963034 ~ 44971924 (+) |
| G2033166 | NA | other | downstream | 1811985 | 44972892 ~ 44973711 (+) |
