LOC110526713 (mesdc2)


Basic Information

Item Value
gene id LOC110526713
gene name mesdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44007566 ~ 44015263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607870.2
CCCTTTCCTTCGTCACGTCCTCCGAAGAAAGACTCTCAGCCAATCACCGTTCACCATCTGTAAGCATGGCGGCGGACTTCAGGTGGGGATGTGCTGTGCTTTTGCTCTGTACGTATTTGATATGTATTTTAGCAACGGACGGTCAAAATAACAAGCCCAAGAAGAAGAAAGATATCCGGGATTACAATGATGCTGATATGGCACGGCTTTTGGAAGAATGGGAGAAAGACGATGACATTGAAGAGGGCGACCTCCCTGAGCACAGACGGTCCCCCCCGCCTATCGACTTTTCCAAGGTGGATGCTTCCAAGCCTGAGGAGCTGCTGAAGATGTCGAAGAAGGGAAAAACTCTGATGGTGTTTGCCACGGTGGAGGGAGAGCCTACGGAGAAGGAAACTGAGGAGGTGACCAGTCTGTGGCAGAGCAGCCTCTTCAATGCCAATTTTGACATTCAGAGGTTCGTGGTGGGCTCCAACCGGGTCATCTTCATGCTGCGAGATGGCAGCTTCGCGTGGGAGGTCAAGGACTTCCTGGTGGCCCAGGAGCGCTGCGCCGAGGTCACCGTGGAAGGCCAGGTGTTCCCCGGGAAGGCCGCCAAGAAAGATGACAGCGCCAAGCAGCAGAACACCAAAAAGAAGGGCAAGAAGAAGTCGGAGGGCAAGAAACCCGACCTGGACGGCAACAGAGCGAGTAAAGACAAGGTTGAACTGTGATTGGctgatgatggagagagagatgggattgGCAGAACAATCACAAGGCCCGTCCAGACCAGCAACACCACCTAGCTTCTTTTACTTTAGTATTTGCAGATCTGAGGCCAATGGGCAGAAGAAAAATGCGTCTGACTACTACCTAGCCTTTCAATCAGGCTTTATGGAGCTGCTACAGATCTGCAGACACTGAAGTGGTAAGAGGCTAGGGGAAGGGACTTGGAGAGAGGTTCAACGGTGACTCAGCACAAGACAGTTTTGTGGCACTGTGTACTCTTTCAAACCTATTTAAGTCAGGGTCAATGACTGACCTCAGAGCAGATGTTAAAGTGTAGCTTTGAGGTTTATGGTTTGTCACTGAGTGAAGGTCAACATGTTTGTATGGCTTATCGATGACTTGTCTCTTTTACAatgtgacattttttattttgaaacaaTTTATGAATCCAACCAGTGCTTCAATATTACTTTTTGTCATTGTTTTCCAGTACATTTGTTAGAGGCATTGTATTTCTTTTTTCCAATAAAACATAAGTAATACAGGAAATGATTTGAGCACAAACTGATTTTCCTACCTGTGCCAAAACCACTGATCTAGTACTGCACTACACAGGTAATGAGTTCTATTTGGGACGCACACGTGATTCTTTTTGATTGTTGATTTCTTGTATTCACCTTCAATAAGACAGTTGAGTTCAGTATTGACTTGTAGCATACAATTGCAGTGGTCACGTTGTACATGGATTTTCAATAAATGACAGAATCAAATTAT

Function

NR:

description
LDLR chaperone MESD-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607870.2 True 1485 mRNA 0.46 3 44007566 44015263
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506886 star5 coding upstream 111931 43883923 ~ 43895635 (+)
LOC110526986 tmc3 coding upstream 127828 43829649 ~ 43879738 (+)
LOC110506879 LOC106587845 coding upstream 230017 43774037 ~ 43777549 (+)
LOC110506869 mex3b coding upstream 410026 43592888 ~ 43597540 (+)
LOC118944556 NA coding upstream 440039 43559380 ~ 43567527 (+)
LOC118944413 NA coding downstream 428192 44443455 ~ 44443884 (+)
LOC110506873 LOC106562659 coding downstream 442188 44457451 ~ 44459931 (+)
LOC110506890 LOC106562659 coding downstream 453879 44469142 ~ 44474261 (+)
LOC110506892 mthfs coding downstream 504622 44519885 ~ 44534056 (+)
LOC118944545 NA coding downstream 532549 44547812 ~ 44564354 (+)
G2032422 LOC106587755 non-coding upstream 23692 43937714 ~ 43983874 (+)
G2032414 NA non-coding upstream 85413 43921914 ~ 43922153 (+)
G2032393 LOC106594141 non-coding upstream 98778 43907845 ~ 43908788 (+)
G2032399 LOC106592135 non-coding upstream 106995 43899476 ~ 43900571 (+)
G2032466 NA non-coding downstream 14654 44029917 ~ 44096137 (+)
G2032483 NA non-coding downstream 63467 44078730 ~ 44118536 (+)
G2032521 NA non-coding downstream 128537 44143800 ~ 44150243 (+)
G2032523 NA non-coding downstream 140219 44155482 ~ 44157762 (+)
G2032529 NA non-coding downstream 148841 44164104 ~ 44165598 (+)
G2032117 NA other upstream 468204 43538990 ~ 43539362 (+)
G2031390 NA other upstream 1320438 42685638 ~ 42687128 (+)
spg21 spg21 other upstream 1326181 42674297 ~ 42681389 (+)
G2031381 LOC106562638 other upstream 1353070 42651759 ~ 42654496 (+)
G2033013 NA other downstream 615212 44630475 ~ 44630763 (+)
LOC110516695 LOC106562481 other downstream 947807 44963034 ~ 44971924 (+)
G2033166 NA other downstream 957629 44972892 ~ 44973711 (+)
LOC110506180 lrrk1 other downstream 1056844 45041116 ~ 45184806 (+)
G2033431 NA other downstream 1247052 45262315 ~ 45262538 (+)

Expression

LOC110526713(mesdc2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110526713(mesdc2) Expression in each Bioproject

Bar chart with 21 bars.
LOC110526713(mesdc2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network