LOC110526990


Basic Information

Item Value
gene id LOC110526990
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 44135723 ~ 44137626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963462.1
AATATCAATATGAGCTCAATGCCCTTTGTGACCCTCCAGGGGTCTTGTCTCATGGCTGAGGAGACTTGCCTTGTGTTACTTTCACATCACAAACATCACCTCAGAGCAGTTCTGTTTGATACATCTGAAATGGCTGGATTTAAGGGACATGGTAAACTGAGGTTCTTATACCTAGGTGATAACAGGATTTCTCAGATTACAGAGAACAGTTTCTTTGCCCTACACAGCTTGGAAACACTTTAATATAACCCAGTCATAAACATCAGCATTCATCCACCTCACCTCCCTAAATAACATATAGATATATTTAGATATATATTTAgactttcctcctcctcctagtgaGTCACAGACAAGTTGAAATCTGACCCATCTATTTGGTGTCTTCCCTTACTCTCAACATCACCATGGACAGCACCCCAAAACAAGACTTTGTCCTTCAGCTCACTACTCCATCTAATGTGATCTTCAAGACTGCTGGAGACAATTATTCCAGTCAGTTGTCTACCTCAAGGCCACGACAGATATCTCCTGTGTGGGTCTCACTTTGCTGCAAAGTACTTCACCTCTCTGCAAGAGTTTGAGTTCCAGTTTGAGTTCCAGTTGGTTTTCTCACCAGAGTTTGTGGACATGAGTGACCTGAACAGGCTTGTGCAGCTAAGGTGTCTGACACTGATGAAAGTGGACCTCATCGTTCAGCCAGCTCTGGGTATCATGTTCCACAATCTATCCAGACTGGAGAGCCTGAATCTTATCGAATGTAGAATCCTCACTCTGGAGGAGGAGCTGAGCAGAGACCTGCAGTCCCTCAGTGTGATTAAATGTCCTGCTATAGAGGAGTTCAGCATGTTGGACAGCTTTCCAGAGCCCCTCACCTTCCTGAGGTTTATGGAGTTCTCTGGTCCTCACCTGCACTGCAGCTGTGATAATGCCTGGCTGGACAACTGGGCCAGGAGACAGCAACATGTCCAGGTCATATTTTGGCTTGAGGGAGAGCTGGAGATGACATGCAAAAATGAAAATGGTATCCAGAACCTCCGCAGGTACTCGGAGGCCCACTGTTCCCTGGATGTGCGTTTTGTCCTGTTTATCTGCACCTCCCTGGACCTGCTCCTCTCCATACTGGTGGTGCTGCCCCATCAGCTGGCTGGGGACCACCTGCTGGCCTTCTGCCACATTGCACATAGTTGACTAGAAGAGGTGGTGCAGAGGCCCAACCCCAGAGGGCGCTACCACTATGATGCCTTTGTGTCATACAGTGGTAGAGACGAGCGCTGGGTGATGGAGCAGCTGCTGCGGCCTCCcttcctgtgtctctgtctgcacAGTAGGGACTTCCAGCTGGGGAAGGAAATCATGGATAACAGCACAGACGGCCTCTACGGCAGCCGCCACGCTCAGGGTCTGGTGAGTCGTCACTACCTGCGCGGTAACTGGTGCTCCTTGGAGCTGCGACTGGACACCTGGCATCTGCTGGTGGAGCACACAGACATCCTTATCCTGGTCTTCCTGGAGGACATACCCCCTAGGCAGCTGTCTGGCCACCACCGCCTGGCCAGGCTGGTCAAGACCAGGACCTACCTGGACTGGCCCCAGGACCCGGCTCTGCAGCCAGCCTTCTGGGACTGCCTGTGGACCAAATTGGCCCCTCCTGAACCACTCCCTGCAcagtaacacaacacattactaatTAATTACAAATAAAAAGGTGAAATGTCTAGAATCAATAAGTaatcaacccatttgttatggcaagcctcgctttgtgtgaaataatagtgttTAAGATGT

Function

NR:

description
toll-like receptor 13

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963462.1 True 1791 mRNA 0.50 4 44135723 44137626

Neighbor

gene id symbol gene type direction distance location
LOC110526712 mesd1 coding downstream 134230 43997725 ~ 44001493 (-)
LOC110526988 LOC106587743 coding downstream 186711 43896015 ~ 43949012 (-)
LOC118944426 NA coding downstream 342870 43780930 ~ 43792853 (-)
LOC110506867 LOC106587795 coding downstream 696527 43428658 ~ 43439196 (-)
LOC110506858 LOC106562715 coding downstream 937546 43180007 ~ 43198177 (-)
LOC110506889 LOC106562647 coding upstream 60844 44198470 ~ 44231491 (-)
LOC110506172 arnt2 coding upstream 119448 44257074 ~ 44383882 (-)
LOC110506880 fah coding upstream 337968 44475594 ~ 44499474 (-)
LOC110506884 LOC106562652 coding upstream 362285 44499911 ~ 44520526 (-)
LOC110506176 LOC106562588 coding upstream 457811 44595437 ~ 44650972 (-)
G2032626 NA non-coding downstream 35597 44097729 ~ 44100126 (-)
G2032620 NA non-coding downstream 51262 44084085 ~ 44084461 (-)
G2032577 LOC106587883 non-coding downstream 120462 44014240 ~ 44015261 (-)
G2032581 LOC106562689 non-coding downstream 126779 44007599 ~ 44008944 (-)
G2032595 NA non-coding downstream 147321 43985307 ~ 43988402 (-)
G2032643 NA non-coding upstream 18481 44156107 ~ 44157972 (-)
G2032644 NA non-coding upstream 19662 44157288 ~ 44159416 (-)
G2032648 NA non-coding upstream 26526 44164152 ~ 44164920 (-)
G2032844 NA non-coding upstream 100447 44238073 ~ 44238340 (-)
G2032544 tmc3 other downstream 253991 43879193 ~ 43881732 (-)
G2032150 NA other downstream 565669 43569160 ~ 43570054 (-)
G2031974 NA other downstream 949999 43184636 ~ 43185724 (-)
LOC110506903 LOC106562480 other upstream 716227 44705368 ~ 44923032 (-)
LOC110506178 cers3 other upstream 801612 44932382 ~ 44956996 (-)
LOC110506182 tecta other upstream 1201471 45338567 ~ 45358724 (-)
LOC110511667 kiaa1549l other upstream 1446132 45501084 ~ 45647805 (-)
G2033970 NA other upstream 1617370 45754996 ~ 45759682 (-)

Expression

LOC110526990 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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LOC110526990 Expression in each Bioproject

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LOC110526990 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network