Item | Value |
---|---|
gene id | LOC110516695 |
gene name | LOC106562481 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048590.1 |
NCBI id | CM023244.2 |
chromosome length | 51113553 |
location | 44963034 ~ 44971924 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036963362.1 | False | 2955 | mRNA | 0.47 | 7 | 44963034 | 44971924 |
XM_036963365.1 | False | 2908 | mRNA | 0.47 | 8 | 44963034 | 44971924 |
XM_036963366.1 | False | 2861 | mRNA | 0.47 | 8 | 44963034 | 44971924 |
XM_036963364.1 | False | 3031 | mRNA | 0.47 | 8 | 44963040 | 44971924 |
TU2325681 | False | 890 | TUCP | 0.52 | 5 | 44963070 | 44967510 |
TU2325683 | False | 271 | lncRNA | 0.44 | 2 | 44971296 | 44971644 |
TU2325684 | False | 271 | lncRNA | 0.44 | 2 | 44971296 | 44971644 |
TU2325685 | True | 271 | lncRNA | 0.44 | 2 | 44971296 | 44971644 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC118944545 | NA | coding | upstream | 398680 | 44547812 ~ 44564354 (+) |
LOC110506892 | mthfs | coding | upstream | 431915 | 44519885 ~ 44534056 (+) |
LOC110506890 | LOC106562659 | coding | upstream | 488773 | 44469142 ~ 44474261 (+) |
LOC110506873 | LOC106562659 | coding | upstream | 503103 | 44457451 ~ 44459931 (+) |
LOC118944413 | NA | coding | upstream | 519150 | 44443455 ~ 44443884 (+) |
LOC110506179 | LOC106562593 | coding | downstream | 31245 | 45003169 ~ 45037201 (+) |
LOC110506180 | lrrk1 | coding | downstream | 69192 | 45041116 ~ 45184806 (+) |
trnaa-ugc-185 | NA | coding | downstream | 319912 | 45291836 ~ 45291908 (+) |
LOC110506916 | snrpa1 | coding | downstream | 343272 | 45315196 ~ 45318427 (+) |
LOC110506920 | LOC106593804 | coding | downstream | 360854 | 45332778 ~ 45334899 (+) |
G2033195 | LOC106562482 | non-coding | upstream | 188 | 44962183 ~ 44962846 (+) |
G2033176 | NA | non-coding | upstream | 29667 | 44930517 ~ 44933367 (+) |
G2033135 | NA | non-coding | upstream | 126617 | 44831258 ~ 44836417 (+) |
G2033115 | NA | non-coding | upstream | 147390 | 44763780 ~ 44815644 (+) |
G2033116 | NA | non-coding | upstream | 196396 | 44766379 ~ 44766638 (+) |
G2033164 | NA | non-coding | downstream | 2069 | 44973993 ~ 44974802 (+) |
G2033161 | NA | non-coding | downstream | 3474 | 44975398 ~ 44976030 (+) |
G2033198 | NA | non-coding | downstream | 7061 | 44978985 ~ 44979205 (+) |
G2033207 | NA | non-coding | downstream | 20289 | 44992213 ~ 44992722 (+) |
G2033013 | NA | other | upstream | 332271 | 44630475 ~ 44630763 (+) |
LOC110506879 | LOC106587845 | other | upstream | 1186025 | 43774037 ~ 43777549 (+) |
G2032117 | NA | other | upstream | 1423672 | 43538990 ~ 43539362 (+) |
G2031390 | NA | other | upstream | 2275906 | 42685638 ~ 42687128 (+) |
spg21 | spg21 | other | upstream | 2281649 | 42674297 ~ 42681389 (+) |
G2033166 | NA | other | downstream | 968 | 44972892 ~ 44973711 (+) |
G2033431 | NA | other | downstream | 290391 | 45262315 ~ 45262538 (+) |
G2033449 | LOC106562599 | other | downstream | 319021 | 45290945 ~ 45291714 (+) |
G2033438 | NA | other | downstream | 408407 | 45380331 ~ 45381376 (+) |
LOC110516695 | LOC106562481 | other | upstream | 3786 | 44963034 ~ 44971924 (+) |