LOC118936594 (LOC106562409)


Basic Information

Item Value
gene id LOC118936594
gene name LOC106562409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 46796050 ~ 46805893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963187.1
TGCACTTGTCAACTTCCGTTTAGAGACGTATCATCACAGACATGGCGGCTAGCTCACGGCggaatccccctcctctccctggagCAGAGAACCAAGACCCACTTTCCGAAATGGCAGATGAAGACAGTGACGAAGGGGAGGATATATTCGTTGGCAATAGCAACCCTGTTGCAGAGGCCTTTCAGCCTGACACAGCCAATGGTGAAGAACCAGCTGACCTCTTCAGTGAAGCAGAAACTAGCACCGCTGTCAACAGTTCCATCACAACCTCTAAGTCCAACGGTGTCCATTCAGACAATGAGAATGATCTATTTGCAGAGGTATCGGTGGAGCTGTCCATGGAGAACCCCAGCACCACAGCCAAGTCCTCTGGAGCTGAATTCACCCCGTCACTTACACGATCAGCAACACAACCTGAGTCTATGGAGCAGTTGGAAGAGGAAAAAGATGAGGACAGCTTTGACATGGAGGTTGCTGTCACCAATCCAGAGAAAATTGGAGATGGCATGAACGCTTACATGGCCTACAAGGTGTCCACTCGGactacattacccatgTTCAGGAACAGGACATTCTCGGTGTGGAGGAGGTTCAGTGATTTCCTTGGGCTGTATGAGAAGCTGTCGGTGAAGCACTCCCTGAACGGCTGTATCATCCCTCCACCACCAGAGAAGAGCGTTGTGGGGATGACCAAAGTGAAGGTGGGAAAGGATGACTCTTCCTCGGCTGACtttgtggagaggaggagagcggctCTGGAGAGGTACCTGCAGAGAGTAGTGTGTCACCCGTCCCTGTTACAAGACCCTGATGTCAGAGAGTTCCTGGAAAGAGACGAGctgCCTAGGGCGgtgggtacacacacactgagtggaGCTGGCTTCCTGAAGATGATCAACAGAGCATCAGATGCTGTCAGTAAGATGACCATCAAGATCAGTGACTCGGATGCTTGGTTTGACAACAAACTGCAGGAGGTGGAGAGCGAGGAGCTGCAGCTGAGGAAACTCCATGCGGTGGTGGACTCCCTGGTCAACCACAGAAAGGAGCTCTGCGGGAACACAGCAGTGTTCGCCAAGAGCATGGCCATGCTGGGCAACTCGGAGGACAACACAGCTCTGTCCCGGGCCCTCTCCCAACTGGCCGAGGTGGAGGACAAGATGGAGACGCTACACCAGGAGCAGGCGGCCAGCGACTTCTTCATCTTGGCCGAGCTGCTGGCCGACTACATCCGCCTACTAGGGGCCGTCAGGGGCTGTTTTGAGCAGCGCATGAAAACGTGGCAGCGCTGGCAGGAGGCTCAGAGCACCCTGCAGAAGAAGAGGGAGGTTGAGGCAAAGCTTCTGTGGGCCAACAAGCCTGACAAACTACAACAGGCCAAAGAGGAGATCACTGAGTGGGAGGGTAAAGTCACTCAGTACGAGAGGGATTTTGACAGGATCTCTGTAACCGTTCGTAAGGAATTCCTCAGGTTTGAGAAAGAGAAGTCCAAGGACTTCAAAAGCCAGATAGTGAAATATCTGGAGTCTCTTCTACAGTCTCAACAGCGGCACGTAAAGTTCTGGGAAGCATTCCTGCCTGAAGCAAAAGCGATAGCATGATGAGGCTTGAGGACGTTAGGAAGAGAACGACTGCCTTTTTGAACACTTTACCTCCTGACTATGTACCCAGAAGACAATGCAACAGAGGGGACAACTACATCTCATCCATATTATTTTAGCATTAGTGATTTATTTTTCAGCTTTTCAGTATGCTCTACATCGGCACAATGTATCGATTCAACAGAGATGAATTTGACAGTATAGCTTTTCTAAGTAAACATGTCAGTGGTGTAAGTGGGATATGTTTTACTCCGTGTTCATGGGCCACCCTTACTCAGATAGGAAGAGTTTGACTTAACAATCCTAAAGTGTTCACATTTTGAGGTACTTCCGTTTACAGTGGAGGGCAGTTCACAACTGTTTACAAAAGGTCATGAAATAACTTTTGGATGCACAAACGCATAGGGGAATGTAGTAAATTGTGTGTGTCGTGTGAAATACCACTTTGACTAGAGAGCTCATTCAAACTGATAGACGGACTAATACCAACGGTCCTCAATTTGTGCATTTACAGACCTACAGTGAAGGGACAAAATAATGGAAGCATGGAGTGTTTGTTTATGGTGACCCATCAGATGAGTGTGCCTGCCTGTGTCTTTGTGCGTGTTCACCATTGTTTGATCATCAGTTGATATACATCTGTAACCTCAAATAATTATGATCAACAGTCTTTCTGAACTGACCATCAGTATATTTTTACGTCTGTGTTCAAACATGTAGCCTCATTGAATTCAATGTGATTGTGAAATGTGTCATGTtcagtgttggaaaaagtactaaatcgtcctacttgagtaaaagtaaagataagtCAATGAAAAATTACTCAAGCAACCGTCACCCTTGAAGAAGAAGTACTAGAAGTACTTGAAGAAGTACTAAAtgttcatacttgagtaaaagtacaaagtAAAAGTCAATGCTATACATAAaactccttatattaagcaaaccagacggcatgattttcttgttttttttatttatttactgacaGACTGTGGCACATAATTCTATCCTGCCTCAGCATTCAAAATGCTGAGGCAGAATAGAATTATGTGCCACAGTCTTATTTTGGGTGTTGGGGTAAATGTATGGGAGTAGTACATATCTTTAGGAATGTGGtggagtaaaagtagtcaaatatAAATAGGAATGTCATTATACACATACCCAAGTATTTTTTTCTTCAGTACTTTAAACCACTGATCAAGTTTCCTCACAATGTTGATAAACTAGcaacagtgcttgacttggactgaaataggtgtcAGTACTCATTTTGTGTGCTGGTACTGTTAAGGTGCAGGAAGTCCATAATACTTTTGAACTAAATATTCTATATAAGGTGCAGGAACTCGAGCAGTAGAAAATTAGGTGCCGCTATTCAGTTCCGGTTGGGGTTATACCCAAATCCAGCACTGACTAGCAGTGTGTAATGATGATGAAAGCAAAGTGATAACAAGTGTAGACTCCTTTAGTTTTCTTACCCAACATTTATATGAGTGTCTGTTATTTTTCCTCAAGATGTGCTTTATTTTTGTAACCACTCGCATTTAGATAAGATATTCCTGAAAATTCTATAGAAGTGAGTAATAAAGATGATTGACTGAACTTCG

Function

NR:

description
sorting nexin-1-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963187.1 True 3220 mRNA 0.45 15 46796050 46805893
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506973 LOC106562785 coding downstream 269 46751669 ~ 46795781 (-)
LOC118936598 LOC107389132 coding downstream 45353 46745374 ~ 46750697 (-)
LOC118944572 NA coding downstream 48529 46747394 ~ 46747521 (-)
LOC118936480 NA coding downstream 197583 46590380 ~ 46598515 (-)
LOC110517597 LOC106587653 coding downstream 211835 46578514 ~ 46584215 (-)
LOC110506963 neo1 coding upstream 2630 46808523 ~ 47019862 (-)
LOC110506956 LOC106562712 coding upstream 294758 47100651 ~ 47118376 (-)
LOC110506955 LOC106562779 coding upstream 318679 47124572 ~ 47133453 (-)
LOC110506951 LOC106562777 coding upstream 331275 47136435 ~ 47333722 (-)
LOC110519573 LOC106562775 coding upstream 557739 47363632 ~ 47396784 (-)
G2034862 NA non-coding downstream 8415 46786979 ~ 46787635 (-)
G2034855 NA non-coding downstream 23559 46771916 ~ 46772491 (-)
G2034851 NA non-coding downstream 32719 46761516 ~ 46763331 (-)
G2034845 NA non-coding downstream 60271 46735314 ~ 46735779 (-)
G2034844 LOC106587658 non-coding downstream 61105 46734548 ~ 46734945 (-)
G2034872 NA non-coding upstream 12501 46818394 ~ 46820168 (-)
G2034905 NA non-coding upstream 86108 46892001 ~ 46892296 (-)
G2034946 NA non-coding upstream 180515 46986408 ~ 46986812 (-)
G2034971 NA non-coding upstream 227771 47033664 ~ 47033886 (-)
G2034536 NA other downstream 515103 46276077 ~ 46280947 (-)
G2034336 NA other downstream 551458 46244052 ~ 46244592 (-)
LOC110506195 LOC106562605 other downstream 979865 45810102 ~ 45825416 (-)
G2033970 NA other downstream 1036368 45754996 ~ 45759682 (-)
G2034880 NA other upstream 24441 46830334 ~ 46830621 (-)
trip4 trip4 other upstream 771866 47504873 ~ 47579187 (-)
G2036102 LOC106562708 other upstream 1419844 48225737 ~ 48227597 (-)
LOC110487445 tle3 other upstream 1756984 48562877 ~ 48618892 (-)

Expression

LOC118936594(LOC106562409) Expression in all Baseline Samples

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LOC118936594(LOC106562409) Expression in each Bioproject

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LOC118936594(LOC106562409) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network