Item | Value |
---|---|
gene id | LOC110506956 |
gene name | LOC106562712 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048590.1 |
NCBI id | CM023244.2 |
chromosome length | 51113553 |
location | 47100651 ~ 47118376 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: uncharacterized protein LOC106562712 isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036963606.1 | False | 3407 | mRNA | 0.47 | 16 | 47100651 | 47118060 |
XM_036963607.1 | False | 2936 | mRNA | 0.48 | 16 | 47100651 | 47118163 |
XM_036963604.1 | False | 3108 | mRNA | 0.48 | 16 | 47100651 | 47118374 |
XM_036963605.1 | False | 3057 | mRNA | 0.48 | 17 | 47100651 | 47118376 |
TU2328121 | False | 269 | TUCP | 0.53 | 5 | 47107963 | 47118160 |
TU2328120 | False | 1540 | lncRNA | 0.46 | 2 | 47115802 | 47117697 |
TU2328119 | True | 1570 | lncRNA | 0.45 | 2 | 47115881 | 47117806 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110506963 | neo1 | coding | downstream | 80789 | 46808523 ~ 47019862 (-) |
LOC118936594 | LOC106562409 | coding | downstream | 294758 | 46796050 ~ 46805893 (-) |
LOC118944395 | LOC106562409 | coding | downstream | 297723 | 46801419 ~ 46802928 (-) |
LOC110506973 | LOC106562785 | coding | downstream | 304870 | 46751669 ~ 46795781 (-) |
LOC118936598 | LOC107389132 | coding | downstream | 349954 | 46745374 ~ 46750697 (-) |
LOC110506955 | LOC106562779 | coding | upstream | 6196 | 47124572 ~ 47133453 (-) |
LOC110506951 | LOC106562777 | coding | upstream | 18792 | 47136435 ~ 47333722 (-) |
LOC110519573 | LOC106562775 | coding | upstream | 245256 | 47363632 ~ 47396784 (-) |
LOC110506948 | LOC106562774 | coding | upstream | 283468 | 47401844 ~ 47498113 (-) |
trip4 | trip4 | coding | upstream | 386497 | 47504873 ~ 47579187 (-) |
G2035189 | NA | non-coding | downstream | 1045 | 47098666 ~ 47099606 (-) |
G2035181 | NA | non-coding | downstream | 5051 | 47095381 ~ 47095600 (-) |
G2035180 | NA | non-coding | downstream | 5398 | 47095025 ~ 47095253 (-) |
G2035176 | NA | non-coding | downstream | 12283 | 47088146 ~ 47088368 (-) |
G2034998 | NA | non-coding | downstream | 29040 | 47071342 ~ 47071611 (-) |
G2035198 | NA | non-coding | upstream | 2840 | 47121216 ~ 47121537 (-) |
G2035205 | NA | non-coding | upstream | 42556 | 47160932 ~ 47161306 (-) |
G2035217 | NA | non-coding | upstream | 89724 | 47208100 ~ 47208978 (-) |
G2035218 | NA | non-coding | upstream | 90972 | 47209348 ~ 47210316 (-) |
G2034880 | NA | other | downstream | 270030 | 46830334 ~ 46830621 (-) |
LOC118936480 | NA | other | downstream | 502136 | 46590380 ~ 46598515 (-) |
G2034536 | NA | other | downstream | 819704 | 46276077 ~ 46280947 (-) |
G2034336 | NA | other | downstream | 856059 | 46244052 ~ 46244592 (-) |
LOC110506195 | LOC106562605 | other | downstream | 1284466 | 45810102 ~ 45825416 (-) |
G2036102 | LOC106562708 | other | upstream | 1107361 | 48225737 ~ 48227597 (-) |
LOC110487445 | tle3 | other | upstream | 1444501 | 48562877 ~ 48618892 (-) |
smad3 | smad3 | other | upstream | 2198652 | 49317028 ~ 49341509 (-) |
LOC110513834 | chst1 | other | upstream | 2498503 | 49615631 ~ 49620267 (-) |
LOC118944572 | NA | coding | downstream | 368281 | 46747394 ~ 46747521 (-) |