LOC110517837 (LOC106562510)


Basic Information

Item Value
gene id LOC110517837
gene name LOC106562510
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 49949158 ~ 49965507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964504.1
GTGTCGCTGTCCTCATTCTCGCTGCCTCCAGTTCAGTAGCCATACCTGGCAGATTAGGTGCACATGTGGGCTCAATTAAATAGAGTAGGCTGGACGGAGAAGCACTGGACAGTTATCTTTACAAGGAAATGTACTTCCTAAATAGGCCTATGATTAGGTTATAATTTACTACATTGCCTAGAAATAGCCCTAAATATTGATCACCCATATTTCTCCGTCTTCCCACTGTTAAAAGGAGTGGAATGTCACCCGGCTGACCTTCGAGTACGactcagagccctatgggacggAGCGCGACGCCACCATCCTGAAGATGGCACGGGAGTTTGGTGTGGAGACCCACGTCAGAAATTCCCACACACTCTACAAACTGGCCAGGATCACTGAGATGAACAACGACATGCCCCCGCTGACCTTCAAGTGCTTTCAGGCCATCGTCCACCGGCTGGAGCTGCCCAAGAAGCCCCTCCCCACTGTTACCCGACAACAGATGGACTGCTGCCAGACAGGTATCGCGGCCAATCATGATGAGCGTTACGGAGTGCCCTCCCTCGATGAACTAGACTGTTGATGCACCTGGACTCAACGCTGATTGGAGGGAGAGCCCTCCACACACAGCCCTGCGTCATTCCCCGTTTCTCCTCATCCGCGGGTTCATCGACTGTCAGTAGCCGCCATCAAAACCTGCAGAAACAACCCAGGCAGCGAAACGAACCTCAGTTGGTAGTTAGATCTGCAGTAATGGTAGAACGATGCCCACCACCAATACCATATGAACCTGTCAACAAGGCTTCAGTGCTATATAGGCTGTTGATCAAGCTGTTTCCCTCAGTACTGCTGACATTTTCCTGCTGTGTTTTATTTAGACAATCAGTAACCATTTTTATATTGATAAGTGTGATCAGTTCAGTctccaaggtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtggttatattCTGTACTGGTGTGGTTTGGGGCTAGGGGAAGCCTCACCCTGCAGCTGTGTATCTTTGACAAAGCATATGAAGGGAATCCTAATGGGTAATATGTGACACCCCTGTCGCGTGCCTCAGTTTGCACTTAGAATATTTGACTCACTTCCTTGTTTGTCAAAATAACATCTCACCAAGTTATATTTTGGCGGTGAACTGTCACTTTCAGTCTGCATAAAGCACTTTATTACGTGTTCCATCACCACTACTTGTTGAAAACAGACTTGttggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggca
>XM_036964503.1
CATTCTCGCTGCCTCCAGTTCAGTAGCCATACCTGGCAGATTAGGTGCACATGTGGGCTCAATTAAATAGAGTAGGCTGGACGGAGAAGCACTGGACAGTTATCTTTACAAGGAAATGTACTTCCTAAATAGGCCTATGATTAGGTTATAATTTACTACATTGCCTAGAAATAGCCCTAAATATTGATCACCCATATTTCTCCGTCTTCCCACTGTTAAAAGGAGTGGAATGTCACCCGGCTGACCTTCGAGTACGactcagagccctatgggacggAGCGCGACGCCACCATCCTGAAGATGGCACGGGAGTTTGGTGTGGAGACCCACGTCAGAAATTCCCACACACTCTACAAACTGGCCAGGATCACTGAGATGAACAACGACATGCCCCCGCTGACCTTCAAGTGCTTTCAGGCCATCGTCCACCGGCTGGAGCTGCCCAAGAAGCCCCTCCCCACTGTTACCCGACAACAGATGGACTGCTGCCAGACAGGTATCGCGGCCAATCATGATGAGCGTTACGGAGTGCCCTCCCTCGATGAACTAGGTTTTAAGACTCACTGCTTTGGTCCTGCTGCGTGGAGGGGCGGGGAGACTGAGGCACTGGAGAGACTGAACAATCATATGGACAAAAAGGTGTTTGAGGAGCTGCTCCTGGATGCAGACTGGAGTGTGAACGCAGGCAGCTGGATGTGGGCTCTCCTGCAGCTCCTTCTTCCAGCAGTTCTTCCACTGCTACTGTCCTGTAGACTTCGGCCGGAGGTCTGACCCCAGCGGAGACTACATTAGACTGTTGATGCACCTGGACTCAACGCTGATTGGAGGGAGAGCCCTCCACACACAGCCCTGCGTCATTCCCCGTTTCTCCTCATCCGCGGGTTCATCGACTGTCAGTAGCCGCCATCAAAACCTGCAGAAACAACCCAGGCAGCGAAACGAACCTCAGTTGGTAGTTAGATCTGCAGTAATGGTAGAACGATGCCCACCACCAATACCATATGAACCTGTCAACAAGGCTTCAGTGCTATATAGGCTGTTGATCAAGCTGTTTCCCTCAGTACTGCTGACATTTTCCTGCTGTGTTTTATTTAGACAATCAGTAACCATTTTTATATTGATAAGTGTGATCAGTTCAGTctccaaggtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtggttatattCTGTACTGGTGTGGTTTGGGGCTAGGGGAAGCCTCACCCTGCAGCTGTGTATCTTTGACAAAGCATATGAAGGGAATCCTAATGGGTAATATGTGACACCCCTGTCGCGTGCCTCAGTTTGCACTTAGAATATTTGACTCACTTCCTTGTTTGTCAAAATAACATCTCACCAAGTTATATTTTGGCGGTGAACTGTCACTTTCAGTCTGCATAAAGCACTTTATTACGTGTTCCATCACCACTACTTGTTGAAAACAGACTTGttggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggcagggtgtgagtatctgtggca
>TU2330773
ggatgatcaatggaaacagaatgcacctggctcaattttgagtctcattgcaaagggtctgaatacttatgtcaataagGATCACTGAGATGAACAACGACATGCCCCCGCTGACCTTCAAGTGCTTTCAGGCCATCGTCCACCGGCTGGAGCTGCCCAAGAAGCCCCTCCCCACTGTTACCCGACAACAGATGGACTGCTGCCAGACAGGTATCGCGGCCAATCATGATGAGCGTTACGGAGTG

Function

NR:

description
cryptochrome-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964504.1 False 1391 mRNA 0.49 4 49949158 49965507
XM_036964503.1 False 1620 mRNA 0.50 6 49949171 49965507
TU2330773 True 245 lncRNA 0.52 2 49957172 49961802

Neighbor

gene id symbol gene type direction distance location
LOC118944495 LOC106562569 coding upstream 8560 49938071 ~ 49940598 (+)
LOC118944429 NA coding upstream 580822 49363829 ~ 49368336 (+)
LOC118944437 NA coding upstream 1025846 48922297 ~ 48923312 (+)
LOC110506975 LOC106562560 coding upstream 1600281 48335348 ~ 48348877 (+)
LOC110506209 LOC106595677 coding upstream 1673882 48253667 ~ 48275276 (+)
LOC110514611 LOC106593737 coding downstream 4042 49969549 ~ 49986453 (+)
LOC118944446 LOC106587903 coding downstream 43287 50008794 ~ 50020545 (+)
LOC110526794 apip coding downstream 75601 50041108 ~ 50048587 (+)
LOC110506980 LOC106593359 coding downstream 144439 50109946 ~ 50151723 (+)
LOC110506984 LOC106562578 coding downstream 378474 50343981 ~ 50349532 (+)
G2037397 NA non-coding upstream 25900 49922820 ~ 49923258 (+)
G2037375 NA non-coding upstream 28180 49885890 ~ 49920978 (+)
G2037374 NA non-coding upstream 63965 49884941 ~ 49885193 (+)
G2037346 NA non-coding upstream 114710 49833948 ~ 49834448 (+)
G2037340 NA non-coding upstream 125154 49823658 ~ 49824004 (+)
G2037429 NA non-coding downstream 23477 49988984 ~ 49991022 (+)
G2037433 NA non-coding downstream 57211 50022718 ~ 50107655 (+)
G2037465 NA non-coding downstream 119374 50084881 ~ 50085983 (+)
G2037511 NA non-coding downstream 195984 50161491 ~ 50162384 (+)
G2037387 NA other upstream 38642 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 546146 49401400 ~ 49403012 (+)
G2036906 NA other upstream 592614 49356195 ~ 49356544 (+)
G2036631 NA other upstream 652797 49295152 ~ 49296361 (+)
G2036456 NA other upstream 1107445 48840981 ~ 48841713 (+)
G2037833 NA other downstream 355415 50320922 ~ 50323439 (+)
G2037834 LOC106562711 other downstream 362813 50328320 ~ 50329070 (+)
LOC110527008 pex16 other downstream 831791 50744617 ~ 50803181 (+)
G2038302 NA other downstream 1035244 51000751 ~ 51003835 (+)
LOC118944431 NA coding upstream 5941 49948796 ~ 49951231 (+)

Expression


Co-expression Network