LOC110506980 (LOC106593359)


Basic Information

Item Value
gene id LOC110506980
gene name LOC106593359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50109946 ~ 50151723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964253.1
AGAACACAGTGGCTCCCCGGTGGATATGGTACACACGGAATATTGATGGTGCTGATATTACACGGATCCCACAAATCCCCCTGACAAcgcaaaaaaaaatgttatcaATAGTTACGCTTATGTAAAATAGGTGGTCTACCGGACTGCATCGAAAACCAGCTTCTGGTGGATATTTAGTAAATACCGAGCGCATATAGGCTACATTCCGCGCGCTCATATGCCATTGGTTTGCGTATTAGGCTCTGCGTTATTTCCCAGGGAATCAAGTTGATGGATTGGCTATGGATGCATTGGGTGGTTGTTTGACGAATCTGGATCAGAACATTCGAATAAGAATGGCTGCGTCCTTTTGAGACATGTATGTACACACCTCGACTGCATCCGTGCATATACTTCTATATTTTTTTGATTCTACGCTTGCTACATCGATCATGTTCGGGAATATTGCCTGGACATGTGACCCTTTATGGTAACTGACATTATACCTCTGCAAATCCTCCAGTAGGCTATCAGAGAACTGCACCAATAAGGGATGAACATCAATCGAAATGTGGATAGTCCATTTCAATCTCGGTGTATGGCATTAACTGTGTGCGCTCAAGAATAATTTCACTGAGAAATCCTATATAGGGCACCACGTTCAGTTCCACAGGAAAGGGCTATATGAAGAAATAGCCACAGACTTATCGCTCTCTCACAAACTCGGCAGCATTTCCCCCCATCGGAATACAAAGTCAAAAGCTACCGGCACCCCGCGGGTTTTCTCCACTGTGACCACAGGAATGGTGGATTCATCCCAATTTCATGCACCTCTTTTTcatcatttgtattttttttttttattgcgtTCGAGGTTCGTTTTCTTACGTTTTTGATTCTGCTGCTGTCGATGTAGACTACGTGTGGTTGCCTCGAATCCTTTCACATGGGTGAGAATTGTGCATCGGTCTTGCAGCCAATCCAATCGGATACCTTGGCCCTGGTgtgtttgatttttttttttgcttcatTTTGAGCACAACCCCATATCTTCGAGAAAATGCAGAGGACCACCAGCCACTGAACTATGAATGCTGATCACAATGATCTCCTCCCTCCAGCGCCAGACAATGAGAGATCCTAGGCTGAGGGGGGCTCGGTCCTATCCCCTCTTCGTGCTACTGTTGGCCCTCCAGATCCTGGCGGTGGCCGGCCTGGTGCGTGCCCAGACCTGCCCCTCTGTCTGCTCCTGCAGCAACCAGTTCAGCAAGGTGATCTGTACCCGCCGGAGCCTGCGCGATGTCCCCGACGGCATCTCAACCAACACACGTTACCTGAACCTGCAGGACAACCTCATCCAGGTGATCAAGGTGGACAGCTTCAAGCATCTACGGCACCTGGAAATCCTGCAGCTGAGCAAGAACCACATCCGCAACATCGAGATTGGCGCCTTCAACGGCCTGGCCAGTCTCAACACCCTGGAGCTGTTCGACAACCGTCTCACCACCATCCCCAATGGGGCCTTCGAGTACCTCTCGAAGCTCAAGGAGCTGTGGCTGAGGAACAACCCCATTGAGAGCATCCCGTCGTACGCCTTCAACCGGGTCCCCTCGCTGCGAAGACTGGACCTTGGAGAGCTCAAGCGGCTCTCCTACATCTCAGATGGAGCCTTCCAGGACCTCAGCAACCTGCGCTACCTAAACCTGGGCATGTGCAACCTCAAGGAGATCCCCAACATCCTACCCTTGGTCAGGCTGGAGGAGCTAGAGATGTCAGGGAACCAAATCTCTGTCATAGGGCCTGGCTCTTTCGCAGGGCTGGCGAACTTGCAGAAGTTGTGGATGATGCACGCTCAGATCCAGACCATCGAGAGGAACTCCTTTGACGACCTCCAGTCCCTGGTGGAGCTCAACCTGGCCCACAACAACCTCACCCTGCTGCCCCATGACTTGTTCACCCCCCTGCACCGCCTGGAGAGAGTCCATCTGCACCATAACCCCTGGAACTGTAACTGTGACATCCTGTGGCTTAGCTGGTGGCTGAAGGAGACAGTGCCTGCCAACACCAGCTGCTGTGCCCGCTGCCACACCCCAGCCAACTACAGGGGTCGCTACATCGGCGAGCTAGAGCACAGCTACTTCCAGTGCGATGTGCCTGTCATCGTGGAGCCGCCGGCGGACCGCAACGTCACAGAGGGCATGGCGGCTGAGCTCAAGTGCAGAACGAGCTCGTTGACCTCGGTCAGCTGGCTCACCCCCAACGGGTCTCTGGTGACCCACGGGGCGTACAAGGTGCGCCTGGCCGTCCTCAACGACGGGACGTTGAACTTCACCACCGTCACCATGCAGGACACGGGGACTTACACCTGCATGGTGAGCAACACGGCGGGCAACATCTCTGCCTCTGCCGTGCTCAACGTCACCTCGGTGGAGAACAGCGGCGTCACCTACTTCACCACAGTCACCGTGGAGACCACAGAGACAGTCGACGACAGCCAGACTCCTGCTCTTCCACCGATTGGCTGGGTATCATCTTCGACCACCAGGGGGCCTCCAGTCCAGACCAGGACCACAGAGCGGACCTACACCgtctctgttctggacctggacGGGGAGGGGGACCGCGGCTTGGAGGAGGTGATGAAGACCACCAAGATCATCATCGGCTGCTTTGTGGCCATCACGCTCATGGCCGCCGTCTTGCTGGTCATTTTCTACAAGATGAGGAAGCAGAACCACCAGCAGGACCCTGATGGCCCCGCCTCCTCCATGGAGGTCATCACAGTGGAGGAGGAGCTCGCCGGTGTCGCTGCAATGGAGACCCACTTACACCTGCCCCAATTGGAGCATTACAACCATTACAATACTTACAGGAGCACCTACCACCACTCCCACACACAGGAACCTTTACTGATTCAAGCCAGCTCAAAAGACAATGTGCAAGAGACCCAAATTTGATTGAGATTCATTAGGAATCCGATATCAGCTATCTCATACAGGAAGTATCATGGACAGAATGGTAAGGATTAGTGTGGGAATGACTTGACACACTTGACTGATGATGTTAACGATCAAATGGATCAACATCTTTCAAAATGGGTGTTCTATTTGAAAAAGTGTCTTTACAAAACAgaaattatttatttaaaaaatatatgtctaGTGGCTAAATCAAGAAAAAACAAATCTGAATGAGCTTTTTAGCTccaatttttatttcacctctgtgtgatGTTGGGGGAAGAATGGTTCACTGCAAACTCATCTACTCAAATGAATTCTCTACATTCAAACCATGTTCGGACCGTTTCCAAATAAGAGTGCAGCAACAGAATAGATTAACACAGCTTCCATTTGACGATAGGGCCATTTCAGATGAAAATATAATACTGCCTTGTTTGAGAATTTTTATCAAAATGTTTGAAGGTCATTATAATATCCCAGATGCCCTGGTGTTTCCTTATTCCTTTGGATATATTCACAGCCCTCGAATATTATCACAGCTACATTACATAAAACTGATGAAGAGGGAGGATCGTCGTATTACACTGTACCCTTCCTGTCACTCAAATTAGATGAGATACAGATGTCCCCATGACTTGGCGGTTAATGAAATGAGCAGTGAGGCCAACATGCCTCGGGAACCAGACGGCCAAATGACTGAACATGCATTTTCCCGGCTCCTAATCAACAACTATACATCCTTCACTTAAATTAAGATGaaggtcttcctccctccctccctccctccc

Function

NR:

description
leucine-rich repeat-containing protein 4C-like

GO: NA

KEGG:

id description
K07523 LRRC4C, NGL1; netrin-G1 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964253.1 True 3730 mRNA 0.50 2 50109946 50151723

Neighbor

gene id symbol gene type direction distance location
LOC110526794 apip coding upstream 61359 50041108 ~ 50048587 (+)
LOC118944446 LOC106587903 coding upstream 89401 50008794 ~ 50020545 (+)
LOC110514611 LOC106593737 coding upstream 123493 49969549 ~ 49986453 (+)
LOC110517837 LOC106562510 coding upstream 144439 49949158 ~ 49965507 (+)
LOC118944431 NA coding upstream 158715 49948796 ~ 49951231 (+)
LOC110506984 LOC106562578 coding downstream 192258 50343981 ~ 50349532 (+)
LOC110506216 traf6 coding downstream 208788 50360511 ~ 50373096 (+)
LOC110506995 LOC106562863 coding downstream 288844 50440567 ~ 50446781 (+)
LOC110506997 LOC106562470 coding downstream 311902 50463625 ~ 50464821 (+)
LOC118944475 NA coding downstream 392357 50544080 ~ 50599404 (+)
G2037433 NA non-coding upstream 2291 50022718 ~ 50107655 (+)
G2037465 NA non-coding upstream 23963 50084881 ~ 50085983 (+)
G2037429 NA non-coding upstream 118924 49988984 ~ 49991022 (+)
G2037511 NA non-coding downstream 9768 50161491 ~ 50162384 (+)
G2037524 NA non-coding downstream 37873 50189596 ~ 50190346 (+)
G2037543 NA non-coding downstream 73119 50224842 ~ 50272897 (+)
G2037546 NA non-coding downstream 75732 50227455 ~ 50228130 (+)
G2037542 NA non-coding downstream 117324 50269047 ~ 50270523 (+)
G2037387 NA other upstream 199430 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 706934 49401400 ~ 49403012 (+)
G2036906 NA other upstream 753402 49356195 ~ 49356544 (+)
G2036631 NA other upstream 813585 49295152 ~ 49296361 (+)
G2036456 NA other upstream 1268233 48840981 ~ 48841713 (+)
G2037833 NA other downstream 169199 50320922 ~ 50323439 (+)
G2037834 LOC106562711 other downstream 176597 50328320 ~ 50329070 (+)
LOC110527008 pex16 other downstream 645575 50744617 ~ 50803181 (+)
G2038302 NA other downstream 849028 51000751 ~ 51003835 (+)

Expression


Co-expression Network