LOC110506984 (LOC106562578)


Basic Information

Item Value
gene id LOC110506984
gene name LOC106562578
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50343981 ~ 50349532 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963714.1
cttgtttatttttttacattcctTGGTCTAATAGTTGTTAGCTAAAACTAGCTACCGAGCAAAAATGCCAGGACGTTGTTCAGCTTTCAACTGTAGGAATACGTTTAAAAATGTTAAACATAAAACAAACAAGGTTACATTTCACAGCTTTCCAAAGCGTGATCCTAAACGAATAAAAGAGTGGGTGGGTCAGATGAAATGGAAAGACTGGCAGCCAACCCCTCATTCCTTACTGTGCTCAGAGCATTTTGAGGAGAGGTGCATGGATAGAACTGGGCAGACAGTGCGTTTACGTGATGATGCAATACCAACTATCTTTGCCTTTCCTAGTCACCTACAAAAAAAGTTTCAGAAAACAGCCGGAAGGAGGAAAAGAGTAACCTTGTTTCCAGAGGATCCTGTTCCTGAGGAGTCGACACAACGGGAGAAGTCTCCACCCACCTACTTAAACCACAGTATATGGCACCCAAGTCGTTTCCATGACGACTACTGTGTTCCACAGAGTATTGACTGGGCTGTAAAAGACATGCCTAAAGAAATCCCATCTGCAACTTTAGAAAAGCAAGGTCTGATCTTTATCCCCAAGCACGCAATCAAGATCAAGGAGAAATGGGATTGGCTGACAATGGATGTGAAGGGACCATTTCCAGAGACCAAAAGTAGACACAAGTTTGTACTAACTGTAATGGACTACTACTCCAAATGGATGGAAGCCTACCCCATGAAGACCAACAACAGTAAAGAGATTGCCAAAATCATCTCTGACCTCATCTCTCGCTTTGGCTTCCCTGTTGGAATCCTGTCTTGTTTGACTCGAGCACACATTTTAGAGATCAACTTGGCTTTGGGTGATCTGAAGAAACTGACAGGCCAACTCATATTCTACCGTCCTCTGGGAGTGTCACTGGATCCAGTAACAAAGTCCCTTGTAGACCGGTTGGTGTCAGATTTGGTGAAAGAACATCCTGATCGTTGGGATGTTTACCTGGCTGCCAGTGTGTTCAGCTTCTGCTGCAAAGAGCACCCCACCACCAGACAAATACCCCTGTCTCTGCTGCGCTGCGGAGGGACTCAGTCTGTCTCCACCTCACCAAGAAAGCTGCCTGATAATGGGATAAAAGGAAGGACCTTTGTCATACTAGATGCCCAGCCACCTCAAAGGGAAGTCCGTGTGGAGTGCAATCAGTGCAGTCAATGGAGCACGGTCAGCCAGGACTCAGAGCTGAAGAGATATGAGGAGATGAAACTTGGGGAGGAGGACTACACCCACACCTGTGTGAGCTGCAGGGTGGCCATGAGCTGCAGGGTGGCCCTGGAGGTCATGAGGGGTTAGGAGACAAGGACATGAAGAACTGGATGTAAATGAGAAAGCTTTTCAAACAAGGACTGAAAAGATGGAGGATATAATAAGGACGTTGGAAACCAAGTGGTGGTGAAGGAAGAGATTGCTGTTGGAGTGAAAAAAGGTTCCATGGGGAAGAAGTTTGAACAATAGGAGTTTATAATGTGTATATACTTACACGTTTCTCAGTCATACACGTTTTTGGAATGAAATAAAAACAGATAGTGTTGTTTTCAAGTTGTGTGTGCTCAAACAGTGGATTGTTGTTTAATAATGCATTTGGGCAGACATCTATATACTGCTTCAGTGCTTCATCTATTCCTCTCTGATTTGGGGTATTTTAGAGAATGGGGTAGCTTTTCTATattcttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacagtctaccaaaagacaaaaggcctgcggggacgggggctgggattaaaataacaatataggacaaaacacacatcacgacaagagagacaactcaacactacataaagagagacctaagacagcaTGGCaggaacacatgacaacacaacatggtagcaacacaacttgGCAGCAGCACAAATCGTGGTACAAACATGTTAATGGGATTTatgttaattgaatgattagaatattccaccctgaaaccatataattgtatggaattgGCTAGAATGTATAAAATTATAATTAATAAATGTGTAGTTCTAGTCAGAATTAGGTTAAAACAATATAGCTAATGTTTGTCTTTATGGAATTTTAAAGACAGACTGAGCAAAATTTGTCGCCGACCTGACcagagatttgggagagaacagggagtacGGCTCAAGGTCTCCctaatctctgtcggctgggtagtgaggaCATTGTGTGCGtctgtttgtgtgaatgtgtgtgcgcgtatggttgtgtgaatgtgggcgtgagaagtcagtataaaatgaattgaTTTGTATTCTTGTCTTCAGAACGTCCCGTGAATAAACCTTTTTGACTA
>TU2331293
CACAGATTGCCCTGTTGTTTACATTTGGTTCTTTTAACATTTTTCCTATGTTAACAGCTTTCCAAAGCGTGATCCTAAACGAATAAAAGAGTGGGTGGGTCAGATGAAATGGAAAGACTGGCAGCCAACCCCTCATTCCTTACTGTGCTCAGAGCATTTTGAGGAGAGGTGCATGGATAGAACTGGGCAGACAGTGCGTTTACGTGATGATGCAATACCAACTATCTTTGCCTTTCCTAGTCACCTACAAAAAAAGTTTCAGAAAACAGCCGGAAGGAGGAAAAGAGTAACCTTGTTTCCAGAGGATCCTGTTCCTGAGGAGTCGACACAACGGGAGAAGTCTCCACCCACCTACTTAAACCACAGTATATGGCACCCAAGTCGTTTCCATGACGACTACTGTGTTCCACAGAGTATTGACTGGGCTGTAAAAGACATGCCTAAAGAAATCCCATCTGCAACTTTAGAAAAGCAAGGTCTGATCTTTATCCCCAAGCACGCAATCAAGATCAAGGAGAAATGGGATTGGCTGACAATGGATGTGAAGGGACCATTTCCAGAGACCAAAAGTAGACACAAGTTTGTACTAACTGTAATGGACTACTACTCCAAATGGATGGAAGCCTACCCCATGAAGACCAACAACAGTAAAGAGATTGCCAAAATCATCTCTGACCTCATCTCTCGCTTTGGCTTCCCTGTTGGAATCCTGTCTTGTTTGACTCGAGCACACATTTTAGAGATCAACTTGGCTTTGGGTGATCTGAAGAAACTGACAGGCCAACTCATATTCTACCGTCCTCTGGGAGTGTCACTGGATCCAGTAACAAAGTCCCTTGTAGACCGGTTTGTCCTCCAATGTACCATGCTACACAGCCACCTGATTCTAAAAGCTTA

Function

NR:

description
uncharacterized protein LOC110506984 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963714.1 False 2359 mRNA 0.43 10 50343981 50349532
TU2331293 True 897 TUCP 0.44 7 50344710 50347777

Neighbor

gene id symbol gene type direction distance location
LOC110506980 LOC106593359 coding upstream 192258 50109946 ~ 50151723 (+)
LOC110526794 apip coding upstream 295394 50041108 ~ 50048587 (+)
LOC118944446 LOC106587903 coding upstream 323436 50008794 ~ 50020545 (+)
LOC110514611 LOC106593737 coding upstream 357528 49969549 ~ 49986453 (+)
LOC110517837 LOC106562510 coding upstream 378474 49949158 ~ 49965507 (+)
LOC110506216 traf6 coding downstream 10979 50360511 ~ 50373096 (+)
LOC110506995 LOC106562863 coding downstream 91035 50440567 ~ 50446781 (+)
LOC110506997 LOC106562470 coding downstream 114093 50463625 ~ 50464821 (+)
LOC118944475 NA coding downstream 194548 50544080 ~ 50599404 (+)
LOC110526797 cars coding downstream 400621 50750153 ~ 50772510 (+)
G2037839 NA non-coding upstream 9800 50333870 ~ 50334181 (+)
G2037838 NA non-coding upstream 10750 50332994 ~ 50333231 (+)
G2037837 ttc17 non-coding upstream 11409 50332275 ~ 50332572 (+)
G2037836 NA non-coding upstream 12179 50331187 ~ 50331802 (+)
G2037835 NA non-coding upstream 14157 50329596 ~ 50329824 (+)
G2037855 NA non-coding downstream 30193 50379725 ~ 50380446 (+)
G2037867 NA non-coding downstream 43903 50393435 ~ 50393884 (+)
G2037989 LOC106562471 non-coding downstream 118684 50468216 ~ 50471240 (+)
G2038047 NA non-coding downstream 234474 50584006 ~ 50588160 (+)
G2037834 LOC106562711 other upstream 14911 50328320 ~ 50329070 (+)
G2037833 NA other upstream 20542 50320922 ~ 50323439 (+)
G2037387 NA other upstream 433465 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 940969 49401400 ~ 49403012 (+)
G2036906 NA other upstream 987437 49356195 ~ 49356544 (+)
LOC110527008 pex16 other downstream 447766 50744617 ~ 50803181 (+)
G2038302 NA other downstream 651219 51000751 ~ 51003835 (+)
G2038305 NA other downstream 656100 51005632 ~ 51006168 (+)

Expression


Co-expression Network