LOC110506216 (traf6)


Basic Information

Item Value
gene id LOC110506216
gene name traf6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50360511 ~ 50373096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963715.1
GCCCGGCATAAACCACCAATGAGGCAGAGAAGAAGGCTGACGAAAATGCAGGAAGTAATTAATTAGCTAAGGAGAGTCAGTCAAGAAAACTGATGTTCTTTCAAGGCTACGATGTCCTGCTTTGAGATTGATAAGAGCAGCCTGGAGAATGATGAAGCGTGTTGCGGTGGGGCGGCCGCGTCACAGCTGTCCAACTGTGCGCTGGCCATGCTGGAGAAAGAGGGCAGCGACTCTGCGCTGAGCCCCACGGAGAGTACCCCCACCAGCCTACAGGGCGGCGCCCCACTGCAAGGCTACGACGTGGAGTTCGACCCTCCGCTGGAGAGCAAGTACGAGTGCCCCATCTGCCTCATGGCCCTGAGGGCAGCCGTGCAGACGCCGTGCGGCCATCGCTTCTGCCGTAGCTGCATCGAGAAGTCCATCCGtgataCAGGGCAGAGGTGTCCAGTGGATAACGAGGTACTACGGGAAGACCAGCTGTTCCCAGATAACTTTGCCAAGCGGGAGATCCTCTCCCTAACGGTGCGCTGCACCAACGTAGGCTGCACTGACAAAATGGAGCTTCGCCGCCTGGATGGCCATGTTACGAAATGTGAGTTTGCCACCGTGCCTTGTCCGCTGTGCCAGGACGCGGTGTGGAAGAGCCAGCTGGAGATGCACCAAAGCCAACACTGCCAGCGGAGACCTGTGTCCTGTCCCGACTGTGTAGAGAGCTTTGTTTACGAGGACAGCAAGATTCATGAGTCGCTGTGTCCCTTTGCCAACGTGGTGTGTCAGTACTGCGGTATGGAGCTCATCAGAGACCAGttggAATCTCACTATGACACAGACTGTCCGAAGGCTCCGATTGCCTGTACCTTCAGCACTTTTGGATGTCGAGAGATGATGCAGCGCAATGACCTGGCGCAGCACATGCAGGAGTTCACTCAGATGCACATGCGCTGCATGGCTGAGTACCTGCACAGGCACAGCCTTACCGGGTACACCCAGCCACCTTCTTCTGAGGACCGAGGGGCTGCCGCCGCAGAGCTGGGGGCACACCCAGGAGCTAGCAGCAGTGGCGCCCCCTGCCAGTGCTGCGGGGAACTGCAGACCATGCGGGAGACCACCCAGCAGCTGGAGGGCCGTCTAGTGCGGCAGGACCACCAGCTACGTGAGCTGAGCATTCAGGCGGGGCTGGTGGCGGAGCTCCGTCGTAAGGTCACCTCGCTGGAGGAGAACCTAAAGGAGCTGGAGGCCAAGCAGTGCCAGGGTGTGTACGTGTGGCCCTTGGAGGGCTTCTCGGGCTACCTACGTACCCAGGCTGCCGGACAGCCTGTTGTGGTGCACAGCCCTGGCTTCTACACGGGCCGGCCGGGCTACAAGCTGTGTCTGCGCCTCCACCTCCAAACGCCCTCGGCACAGCGCTGCTCCAACTACATCTCACTGTTTGTTCACACCATGCAGGGGGAATTTGATGGGCAGCTGTCGTGGCCCTTCCAAGGCACCATCCGGCTGGCCGTGCTGGACCAGGGGCCTGAGGGCCAGCACCATGTGGAGGTGATGGAGACCAAGCCCGACCTGCAGGCCTTCCAGAGGCCCACCATCCAGAGGAACCCCAAGGGCTTTGGCTACGTCACCTTTCTGCACTTGATGGAGCTACAGCAGCGGGGGTTTGTGCACGACGACACGCTGCTGGTGCGCTGCGAGGTGACGCCGCGCTTCGACACCGCCCTGAGGCGCGAGGGGGCGGCCATGCAGCCCAGAGGGCCCGAGGCCTCGCTGTGAGGACACTTTTAACGTTCCAAGTGACGAGGTCAATCGCCACCAACGTTATCAGTACAAAGTATCAGTTTGCCGTTTTCCTGAGTTGTTGTATCACACAGGATCATTGCATTGGGCTCAGTCATGACCGACATCATGGGAAAGTGTACGGCTCAGTTGTGGGTTTTTATCTCCAACTCCAAAAGGCTTTTCTCTGCTGTAGCTGTTGAGTGATGGACTGGATGTTGGTGGCGATGAACACCAAGGTTTCCTGCAACAAGTCGAGAGCTTGGGGCTGTATTATTTTATCtgcatttttgtcaaaattgaGTTATTGACATTAGCCTtattctgttcaatgttctctacctatataTTCCTCCAAATACCCCAATTCAtgttaagttcaaaagaatacaagatttaaaaaaaaatagctgACACCATTTAAACCAATGAGGTTTCAGAACTTTAAAGCCGATCTCACAATCATCTATTTGCAGGCAGAACGTTCTAGTCCCATGGTCTGTGTTCCATCACTGATCCAGCAATGTGTCGCAGGCTACTGTACTGCTCAAAATAGATAGGATTTCAAAATGTCTTATGGTGCCTACATTAGGTTGTAATAAACATGACTTTGGTTTCAGTGCATCGTTCTTTGTGACAGCTTTGTAGTGGAGGCCGGGCAAAGTCTCGTTAATTATCATAACATGTTATTACAGTTTGATATTTATGTCAAGCTCAAAGTCATGTTTATGACAACTTTATGTTGGCATTAAAGAAGCCAATTCAAATAAGATGTTACTAGAAGTGTATTTCTGTTGGAGAttaggaaggggacagagagtgATGTAGGACAGAGAGCTACTCAATCAAATGAATCCCTTTTAGCGCTTTCTACAAAGCACAGCGAGGGCTGGGGCAGGACCATCTGTAGGCAGGAGATGACCAGACGCAGAACTACCTATCAACTTATTGTACATCCTGGATGACGAGAGTCAGGATCACTGGCATTTCCCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACATGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAATGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTCTGGTTGGAGGATCATACAGGGAAGATGGGGCAACGTCCTAACCTGGTCTTAAGACCTCTTCTGGTTGGAAGATCATACAGGGAAGATGGGGCAACGGTCCTAACCTGGTCTTAAGACATCTTCCCAGACAAAAGAGCTGTGCATGAAGACGTCTTCGGAAGAAGAGATTTCCTGAACAATGGCTGTGCGTTAGGACATACAATAAGCAGTGACATATGAATGAGTTGGTATACACAGTGGTCTAAAGTACTTAAGTACTACTTGTGTTTTTCTTTtggtggtatctgtactttactatttatatttttgacaacttttactccactacatttctaaagaaaataaatgtacattttcctccatacattttccctgtgaCACCCAAACGTACTGGTTACATTTGGaaatgctcaggcaggacagcaaCATGGGCTAATCATGCACCTatcattttgttttttaccttttattttaaCTGGGAAGAAATTGAGGCCTAGGTTTCTTTTCCAGCTGTGCTCtgtaaaatacaatataaatatacacattatacacaacATATTACAATACAAAACACAGGCATGTTAAGCACTATTAAAACATCACAAATCATTCAGAAAAAGTTACATTCCTCGACAAGTAAGTCCCCAATCAATACATTAAATTGCCTCAaacggcaccagaacatcaaaatgaaatgtatttatattttttgggggCAATGTGGTGCATTTAAGCTAAAACCAGATTTACCTAGCTCGGTGGAGACCCTAGGCACGTCGAGTTAACGACACCTCGGGTGTCTATACTTCAAAAGAAAAGTTAGATAAGACGGAAGTTTATGAAGCAGGGCCTTGTAAACAAAAAGGGAGTAATGTAGAGAGACCTACGGGTCTTTAGCGaagtccagccaaccttttgatacaggatgcagtgttGTGATGAGTATCAAATCTGTCGCCCGTAACAACGAAGGGCAACGTGGTAGATGGAATCCATAGCTTTAAGACTAGTAGCAACTGCATTTGGATAAATAATCACCACAATCAAAGAACAGATGAAAAggttgactgaataatctgcttccTACTGCTGAGAGAAAGGCACCATCGATTTCTGTAGAAAAAAAGACCGCTTTAAATCTTCGCTTCTTAACCAGCTCATCTATGTTTATTTTAAAACGTCAAATCCATATTAATCCAAATGTCTTATTTATATGCAGGAACACGTTCGATTGGAGGACCATCTAATGAGTGAACATGTAGTTCATCTGAAACGTTCTTACGAGAgtttaaaaacatgtatttagttTTGTCCATATTAAGCGCAAGTTTTAAATCGGCAAGGGATTCCTACATAGCTATAAAATCGGACTAGTTTTGACACAGCCAGATCAataggagcggcaggtagcctagtggttagagcgttggactggaaggtttctagatcgaatccctgagctgacaaggttgttGTTCTACCCTTGAacaaacccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaattaaaaaactAGTCGGGGCAATAGTGTACATAATAGTATCATCCACATTTAAATGAAGTTAACAGTTAACCAATGGTGTTAATGTAAATAGTGAATAGAACACGTCCCAAAATCAGGATTTGACAGTTTTTCAGAATTTACCCAGGTTCCCATTACAATCCCAAAGAGCAGTTACATAATTCCATTTAGCCTTGCTGATTTGTCTTGCACAATAATTCCTCAGTTGCTTAAAGCTTGCCGGGCCTGTGTCTCTTTTATCGTCTCTTTTATAAATGACCTCTGATCATTCTGGAGTGTACCAGGCATTCCATCTCCCTTTAACCCTTCATATTTTTAAAGGGAGCATTGAAGAAAGGCTGAAAGCCTAAATCATGTTGATGGATGGCTGAAATACAATCAAGGTCACTAAAATAAAGATTAAAAGCCTGTTCACTTAACGTTTTTAAAGTTCCTCTTTGTGTTCAGATGAGGTTTAGATTTGTGTTGTCTCACATCAACAGTcagtttattttattattttacccccccccccctcccctttttctccccaatttcgtcaTTTCCAATTCCGATCTTGTCTcgtcactgcaactccccaacgggctcgggagtggcaaaggttgagtcatgcgtTCTCCGAAATATGGCCCGCCAAATCATGCTTAATTAAACACCTGCCAGCCTGGAGGAAACACCTGAGGActgagtcagcctgcaggcgcccagcccgccacaaggtgttgctagagcgcgatgagccaagtaatgttacagtatcataacacatAAAACCAATCGTGACACCTTCATGCATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatTTATGAAACCAGCCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACACCTTCATGCATGttacagtatcataacacatTTATGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatTTATGAAACCAGCCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACACCATGCATGttacagtatcataacacatTTATTCAGCATCATGTATAAGGGGCCTATGGCGTATTCACCAGTTAGCATACTCTTTCCATAGGATACTGACCCAATGTAAACAGAGTCACAGGTACTGAGAAAAACTACGCTTTGCTTTGTGTATTGCTCAACAGG
>TU2331288
cccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaattaaaaaactAGTCGGGGCAATAGTGTACATAATAGTATCATCCACATTTAAATGAAGTTAACAGTTAACCAATGGTGTTAATGTAAATAGTGAATAGAACACGTCCCAAAATCAGGATTTGACAGTTTTTCAGAATTTACCCAGGTTCCCATTACAATCCCAAAGAGCAGTTACATAATTCCATTTAGCCTTGCTGATTTGTCTTGCACAATAATTCCTCAGTTGCTTAAAGCTTGCCGGGCCTGTGTCTCTTTTATCGTCTCTTTTATAAATGACCTCTGATCATTCTGGAGTGTACCAGGCATTCCATCTCCCTTTAACCCTTCATATTTTTAAAGGGAGCATTGAAGAAAGGCTGAAAGCCTAAATCATGTTGATGGATGGCTGAAATACAATCAAGGTCACTAAAATAAAGATTAAAAGCCTGTTCACTTAACGTTTTTAAAGTTCCTCTTTGTGTTCAGATGAGGTTTAGATTTGTGTTGTCTCACATCAACAGTcagtttattttattattttacccccccccccctcccctttttctccccaatttcgtcaTTTCCAATTCCGATCTTGTCTcgtcactgcaactccccaacgggctcgggagtggcaaaggttgagtcatgcgtTCTCCGAAATATGGCCCGCCAAATCATGCTTAATTAAACACCTGCCAGCCTGGAGGAAACACCTGAGGActgagtcagcctgcaggcgcccagcccgccacaaggtgttgctagagcgcgatgagccaagtaatgttacagtatcataacacatAAAACCAATCGTGACACCTTCATGCATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatTTATGAAACCAGCCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACACCTTCATGCATGttacagtatcataacacatTTATGAAACCAGTCGTGACTCCTTCATGCATGttacagtatcataacacatTTATGAAACCAGCCGTGACTCCTTCATGAATGttacagtatcataacacatGAAACCAGTCGTGACACCATGCATGttacagtatcataacacatTTATTCAGCATCATGTATAAGGGGCCTATGGCGTATTCACCAGTTAGCATACTCTTTCCATAGGATACTGACCCAATGTAAACAGAGTCACAGGTACTGAGAAAAACTACGCTTTGCTTTGTGTATTGCTCAACAGGGAAAAAAAACGTACTCTTGCATCAAAGTTACTGTAGGTGCTTGTGTCAACAAGTGGCATGATTCCATTCCTAACAATTAACATCCATCCAGTCCATTCATACCCAAAAAGGGAAGTCAACCAGGGCCCAGGGAGAGGACGGATTGAGTTATCCGTTTGGAATTAGATCAATGCCTTCTGTTGCCAAGAAAGACTCAAGACTGTCGAGCAGAGTCATAATACATGTTCTCCCTGTGTCTGTGGCATTATTAGCAGAGCAGCAGAGATAATAAATGTTCTCCCTGTGTCTGTGGCGTTATTATCAGAGCAGCAGAGATAATAAATGTTCTCCCTGTGTCTGTGGCGTTATTATCAGAGCAGCAGAGAAAATaaatgttctctctgtgtctgtggcgTTATTATCAGAGCAGCAGAGATAATAAATgtgctctctgtgtctgtggcgTTATTATCAGAGCAGCAGAGATAATAAATGCTCTCCCTGTGTCTGTGGCgttattatcagagcagcagagataataaatattctctctgtgtctgttgttTTATTTTGTGGCACATCAATGGATGTTGACCGTACCGCATCATACAGTAGCTACAATTGGATGAGGCTATGGAGACATCCTCACTCACCAGAATGGATAACTTACTCTCATATGTTAAATCCCACTGGACTTTTGATTGTTTCTTGTGGAATAAGTTGAATATATTTGTGTGGACATATATGCCTTACTGTGTTGTTTTGCTTTGCCACATGGTGCAGTATGacattagtgccttgttgcaaacaggatgcatgttttggaatattttttattctgtacaggcttccttctattcactctgtcatttaggttagtattgtggtgt

Function

symbol description
traf6 Predicted to enable tumor necrosis factor receptor superfamily binding activity and ubiquitin protein ligase activity. Acts upstream of or within several processes, including innate immune response; positive regulation of transcription, DNA-templated; and response to virus. Predicted to be located in cytoplasm. Is expressed in several structures, including bone tissue; central nervous system; heart; immune system; and liver. Orthologous to human TRAF6 (TNF receptor associated factor 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963715.1 False 6194 mRNA 0.47 8 50360511 50371743
TU2331288 True 2335 lncRNA 0.41 2 50370278 50373096

Neighbor

gene id symbol gene type direction distance location
LOC110506984 LOC106562578 coding upstream 10979 50343981 ~ 50349532 (+)
LOC110506980 LOC106593359 coding upstream 208788 50109946 ~ 50151723 (+)
LOC110526794 apip coding upstream 311924 50041108 ~ 50048587 (+)
LOC118944446 LOC106587903 coding upstream 339966 50008794 ~ 50020545 (+)
LOC110514611 LOC106593737 coding upstream 374058 49969549 ~ 49986453 (+)
LOC110506995 LOC106562863 coding downstream 68824 50440567 ~ 50446781 (+)
LOC110506997 LOC106562470 coding downstream 91882 50463625 ~ 50464821 (+)
LOC118944475 NA coding downstream 172337 50544080 ~ 50599404 (+)
LOC110526797 cars coding downstream 378410 50750153 ~ 50772510 (+)
LOC110527008 pex16 coding downstream 419775 50744617 ~ 50803181 (+)
G2037839 NA non-coding upstream 26330 50333870 ~ 50334181 (+)
G2037838 NA non-coding upstream 27280 50332994 ~ 50333231 (+)
G2037837 ttc17 non-coding upstream 27939 50332275 ~ 50332572 (+)
G2037836 NA non-coding upstream 28709 50331187 ~ 50331802 (+)
G2037835 NA non-coding upstream 30687 50329596 ~ 50329824 (+)
G2037855 NA non-coding downstream 7982 50379725 ~ 50380446 (+)
G2037867 NA non-coding downstream 21692 50393435 ~ 50393884 (+)
G2037989 LOC106562471 non-coding downstream 96473 50468216 ~ 50471240 (+)
G2038047 NA non-coding downstream 212263 50584006 ~ 50588160 (+)
G2038054 NA non-coding downstream 230295 50602038 ~ 50603517 (+)
G2037834 LOC106562711 other upstream 31441 50328320 ~ 50329070 (+)
G2037833 NA other upstream 37072 50320922 ~ 50323439 (+)
G2037387 NA other upstream 449995 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 957499 49401400 ~ 49403012 (+)
G2038302 NA other downstream 629008 51000751 ~ 51003835 (+)
G2038305 NA other downstream 633889 51005632 ~ 51006168 (+)

Expression


Co-expression Network