G1989937 (zdhhc1)


Basic Information

Item Value
gene id G1989937
gene name zdhhc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 2389254 ~ 2393500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2276231
GGCTAATATTTATTAACAAGATACAAAATTGTCAAATAAAATTGAGTAAGGCACAGATCTTCAAATGTCATCCTTACAGATCATGAACCATTCAGACACAGTAAAAATGCAGAATAATGATAGCCGACGTCACTGTGGAAAAGGGGATCAATTGGATGTTGATATGAGTTTCAGTTTGATTCCATACAGTGGTGGGGAAAACTATCCAAGTAGTGTGTAACCaggtatacagacagacaggcaaacagacaggcaaacagacagacaagacaatcAAACTGTTCTGGTGGACATCCCTGcactctgtggcattgtgttgtgtgacagaacagcacattttagagtggccttttattgtccccagcacaaggtgcacctgtgtaatgtttaatcagcttcttaatatgccacacctgtcaggtggatagattatcttggcaaagaagaaatgctcattaacagggctgaaaacaaatttgtgcacaacatttgagagaaatgagctttttgtgcatatgaaacatttctgggacctTTTATTAATTTTATAAACACTACAGGTCGCGTTGATATTTTCAGtataaatggaattcaaataattgctCCGATGTCATCAATTAGTTCTTTAAAAACTGCAAAAATGACTGTGATCTCAGTTAATGCTCAGCActcgcagacagacagacagtcagatggGTAAGCAATAACAATAAACAAACTAAAGGATTCAGGTAGAAAACACACCAACACGATGAATGGTGTTTCCATGAAAAAGATGAACAGGTAACATTAGTTTACAAAGTGTAGACCTGGGAAGGCAGAACGTTACGGTTTCTTGCTTCCTGTACAAATCACCAAGGATTCTTCATTCAGAAAGACGCTTCAACAGGAAGAAATAAGAACAAGTAGAATCATACTAAAAGCTGTGTGTTTTATGATACAGGATGTTAACCTGAAGACGTGAACACAGGTACCATTTAGTGTTGTGGGGATTTTAATCATATAGGACGCAtttcaaatggaaccctatgagCTAAGGGctctggtctaaagtagtgcactatatagggaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccatagggctctgtggtctaaagtagtgcactacatagggtacagggtgccatagggtcctggtctaaagtagtgcactatatagagaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccattgggctctggtctaaagtagtgcactacatagggtacagggtgccattgggccctggactaaagtagtgtactatatagggaacagggtgccattgggtcctggtctaaagtagtgcactacatagggaacagggtgccattgggctctggtctaaagtagtgtactgtatagggaacagggtgccattggggatgtAGTCATAGTTGAATAGTGGAGACTGTGGTATCAAGGCTCTTCCAGGcagaacagacagtcagtcagacagtcagtcagtcagtcagacagtcagccagctagtcagccagccagccaaccagtcagacagccagccagccctcCAGCCCAGGGTGTAGTGGTCCATCCTGGGGCCCAGTGTGCAGTGGCCCATCCTGGGGGAGCTAGTCTACGCCATTGGGGTGCCTGCCCTGGAGCTATGGTTGGAGCTGGACCCAGGACCAGGCTGCTCCAGGCCTCTCCTACTGGCCTGTCTGCTGCTGTGTTTGTTGTCCCGGTGCTGGGCTCCTCCCCCCGGCTGTCCACTACTCCTACTGACGTAGACCGTAGGAGGCTGGGCAGCCATCTCAAACCTctgctccccccctccccctgtcctGCTGCTGTGTGCGGAGGACTTCCTCTTGGTCCGGGGCTGGGGCGAGGGATGGGGTCGGGCTGCAGTTAGCAGTAGAGAGCGTTGAGAAGACGCTGCAGTCCTACCCGTAGACGTTCCTGCCGCGGCGGAGGTGCCCAGTCGTGCCAACGCCACGGGGATCTCCTCCAGGGACTCTGCAGAGTCAGAGTGATACTCAGCAGGGGGCCCGGCGGGCAGCACGGGGTCAGGTTGGAGACCAGGATGTAGGGAGCTAGTGGGGGGCTGGGAGGCccgcagggggaaggagaggtgcTGGTTCAGGGAGCTGGACAGGTGGGACACGGATGTGGGGACTGGAGTTACACTGCAGGAGT
>TU2276232
GGCTAATATTTATTAACAAGATACAAAATTGTCAAATAAAATTGAGTAAGGCACAGATCTTCAAATGTCATCCTTACAGATCATGAACCATTCAGACACAGTAAAAATGCAGAATAATGATAGCCGACGTCACTGTGGAAAAGGGGATCAATTGGATGTTGATATGAGTTTCAGTTTGATTCCATACAGTGGTGGGGAAAACTATCCAAGTAGTGTGTAACCaggcatacagacagacaggcaaacagacaggcaaacagacaggcaggcatacacaggcagacagacaggcatataGGCAGgcatacacaggcagacagacaggcatacacaggcagacagacaggaatatagacaggcaaacagacaggcaaacagacaggaatatagacaggcaggcaaacagacagacaggcaaacagacaggcatacagacaggcagacacaggcagacagacagacagacagacagacagacagacagacagtcagacagacagacagacagtcagacagacagtcagtcagtcagtcagacagacagtcagacagacagtcagatggGTAAGCAATAACAATAAACAAACTAAAGGATTCAGGTAGAAAACACACCAACACGATGAATGGTGTTTCCATGAAAAAGATGAACAGGTAACATTAGTTTACAAAGTGTAGACCTGGGAAGGCAGAACGTTACGGTTTCTTGCTTCCTGTACAAATCACCAAGGATTCTTCATTCAGAAAGACGCTTCAACAGGAAGAAATAAGAACAAGTAGAATCATACTAAAAGCTGTGTGTTTTATGATACAGGATGTTAACCTGAAGACGTGAACACAGGTACCATTTAGTGTTGTGGGGATTTTAATCATATAGGACGCAtttcaaatggaaccctatgagCTAAGGGctctgtggtctaaagtagtgcactatatagggaacagggtgccattgggtcctgatctaaagtagtgtactatatagggaacagggtgccatagggctctgtggtctaaagtagtgcactatatagggaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccatagggctctgtggtctaaagtagtgcactatatagggaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccatagggctctgtggtctaaagtagtgcactatatagggaacagggtgccattgggccctggtctaaagtagtgtactatatagggaacagggtgccattgggctctggtctaaagtagtgcactacatagggtacagggtgccatagggtcctggtctaaagtagtgtactatatagggaacagggtgccattgggctctggtctaaagtagtgcactatatagagaacagggtgccattgggtcctggtctaaagtagtgcactacatagggtacagggtgccatagggtcctggtctaaagtagtgcactatatagagaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccattgggtcctggtctaaagtagtgtactatatagggaacagggtgccattgggctctggtctaaagtagtgcactacatagggtacagggtgccattgggccctggactaaagtagtgtactatatagggaacagggtgccattgggtcctggtctaaagtagtgcactacatagggaacagggtgccattgggctctggtctaaagtagtgtactgtatagggaacagggtgccattggggatgtAGTCATAGTTGAATAGTGGAGACTGTGGTATCAAGGCTCTTCCAGGcagaacagacagtcagtcagacagtcagtcagtcagtcagacagtcagccagctagtcagccagccagccaaccagtcagacagccagccagccctcCAGCCCAGGGTGTAGTGGTCCATCCTGGGGCCCAGTGTGCAGTGGCCCATCCTGGGGGAGCTAGTCTACGCCATTGGGGTGCCTGCCCTGGAGCTATGGTTGGAGCTGGACCCAGGACCAGGCTGCTCCAGGCCTCTCCTACTGGCCTGTCTGCTGCTGTGTTTGTTGTCCCGGTGCTGGGCTCCTCCCCCCGGCTGTCCACTACTCCTACTGACGTAGACCGTAGGAGGCTGGGCAGCCATCTCAAACCTctgctccccccctccccctgtcctGCTGCTGTGTGCGGAGGACTTCCTCTTGGTCCGGGGCTGGGGCGAGGGATGGGGTCGGGCTGCAGTTAGCAGTAGAGAGCGTTGAGAAGACGCTGCAGTCCTACCCGTAGACGTTCCTGCCGCGGCGGAGGTGCCCAGTCGTGCCAACGCCACGGGGATCTCCTCCAGGGACTCTGCAGAGTCAGAGTGATACTCAGCAGGGGGCCCGGCGGGCAGCACGGGGTCAGGTTGGAGACCAGGATGTAGGGAGCTAGTGGGGGGCTGGGAGGCccgcagggggaaggagaggtgcTGGTTCAGGGAGCTGGACAGGTGGGACACGGATGTGGGGACTGGAGTTACACTGCAGGAGT

Function

symbol description
zdhhc1 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be located in Golgi apparatus; endoplasmic reticulum membrane; and endosome membrane. Predicted to be integral component of membrane. Orthologous to human ZDHHC1 (zinc finger DHHC-type containing 1).

NR:

description
PREDICTED: translation initiation factor IF-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2276231 False 2288 lncRNA 0.49 5 2389254 2393500
TU2276232 True 2585 lncRNA 0.51 7 2389254 2393500

Neighbor

gene id symbol gene type direction distance location
LOC110518214 LOC106591800 coding downstream 136499 2092264 ~ 2252755 (-)
LOC118944440 NA coding downstream 297505 2086953 ~ 2091749 (-)
LOC110510393 LOC106592435 coding downstream 385620 1975952 ~ 2003634 (-)
LOC110511392 LOC106594384 coding downstream 416989 1967815 ~ 1972265 (-)
LOC110520677 LOC105028853 coding downstream 506298 1849296 ~ 1882956 (-)
LOC118944544 NA coding upstream 87274 2480774 ~ 2480976 (-)
LOC118944543 NA coding upstream 88757 2478242 ~ 2486594 (-)
LOC118944516 NA coding upstream 90377 2483877 ~ 2484392 (-)
LOC110519438 plekhg4 coding upstream 195963 2589463 ~ 2786486 (-)
LOC118944482 LOC106588022 coding upstream 462593 2856093 ~ 2905683 (-)
G1989934 NA non-coding downstream 4057 2384800 ~ 2385197 (-)
G1989931 NA non-coding downstream 12742 2370444 ~ 2376512 (-)
G1989925 NA non-coding downstream 70782 2318090 ~ 2318472 (-)
G1989924 NA non-coding downstream 72446 2316392 ~ 2316808 (-)
G1989923 NA non-coding downstream 78108 2310840 ~ 2311146 (-)
G1989944 NA non-coding upstream 25444 2418944 ~ 2426813 (-)
G1989948 NA non-coding upstream 47997 2441497 ~ 2442750 (-)
G1989955 NA non-coding upstream 66816 2460316 ~ 2460626 (-)
G1989957 NA non-coding upstream 70849 2464349 ~ 2464569 (-)
G1989922 NA other downstream 83474 2304838 ~ 2305780 (-)
terfa LOC106588121 other downstream 552939 1811256 ~ 1840909 (-)
G1989684 NA other downstream 784905 1599317 ~ 1604349 (-)
G1989681 NA other downstream 794238 1593497 ~ 1595016 (-)
G1989939 NA other upstream 4773 2398273 ~ 2399734 (-)
G1990296 NA other upstream 561910 2955410 ~ 2956519 (-)
LOC118944401 LOC106588129 other upstream 566012 2958963 ~ 3117243 (-)

Expression


Co-expression Network