G1990489


Basic Information

Item Value
gene id G1990489
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 3255501 ~ 3259682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2277014
taacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccatagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaaaagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccacggtaacattacctggcaggtaaagtaaaggagaacagacaacagtaacattacctggcaggtaaagtaaaggagaacataccacagtaacattacctggcaggtaaagtaaaggagaacagaccacggtaacattacctggccaggtagaggagagcagaccacagtaacattacctggccaggtaaagtaagggagaacagaccagagtaacattacctggccaggtaaagtaaaggagaacagaccagagtaaaATTACCTGgtcaggtaaagtaaaggagaacagaccacactaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccaaagtaacattacctggccaggtaaagaaaggagaacagaccacagtaacattaccttgCCAGGTAAAGTAacggagaacagaccacagtaacattacctggccaggtacaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagtaacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccaaagtaacattacctggccaggtaaagaaaggagaacagaccacagtaacattacctggccaggtaaagtaacggagaacagaccacagtaacattacctggccaggtacaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggaaaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccatagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacataccacagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggccaggaaaaagtaaaggagaacagaccacagtaacattacctggcaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtaaagtaaaggagaacagaccacagtaacattacctggccaggtagagtaaaggagaacagaccacagtaacattacctggccaggta

Function

NR:

description
PREDICTED: mucin-13 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2277014 True 1711 lncRNA 0.44 2 3255501 3259682

Neighbor

gene id symbol gene type direction distance location
LOC118944414 NA coding downstream 69709 3183940 ~ 3186858 (-)
LOC118944401 LOC106588129 coding downstream 138258 2958963 ~ 3117243 (-)
LOC118944482 LOC106588022 coding downstream 349818 2856093 ~ 2905683 (-)
LOC118944483 NA coding downstream 381661 2871334 ~ 2873840 (-)
LOC110519438 plekhg4 coding downstream 469019 2589463 ~ 2786486 (-)
LOC110506223 LOC106588037 coding upstream 217476 3477158 ~ 3492750 (-)
LOC110516700 LOC106591035 coding upstream 814363 4074045 ~ 4158044 (-)
LOC110498670 anx2a coding upstream 1110700 4370382 ~ 4390993 (-)
LOC118944435 LOC106588010 coding upstream 1180151 4439833 ~ 4700484 (-)
LOC110526851 vps13c coding upstream 1458970 4718652 ~ 4972108 (-)
G1990478 NA non-coding downstream 21914 3233180 ~ 3233587 (-)
G1990467 NA non-coding downstream 44236 3210180 ~ 3211265 (-)
G1990443 NA non-coding downstream 126315 3124177 ~ 3129186 (-)
G1990400 NA non-coding downstream 135909 3119375 ~ 3119592 (-)
G1990503 NA non-coding upstream 55320 3315002 ~ 3315544 (-)
G1990506 NA non-coding upstream 57412 3317094 ~ 3317711 (-)
G1990507 NA non-coding upstream 63758 3323440 ~ 3326275 (-)
G1990505 NA non-coding upstream 68448 3328130 ~ 3330049 (-)
G1990523 NA non-coding upstream 84185 3343867 ~ 3344264 (-)
G1990296 NA other downstream 298982 2955410 ~ 2956519 (-)
LOC118944543 NA other downstream 768907 2478242 ~ 2486594 (-)
G1989939 NA other downstream 855767 2398273 ~ 2399734 (-)
G1990495 LOC106562810 other upstream 27485 3287167 ~ 3288498 (-)
G1990760 LOC100379111 other upstream 243269 3502951 ~ 3515660 (-)
G1990907 NA other upstream 550523 3810205 ~ 3810560 (-)
G1990926 NA other upstream 612918 3872600 ~ 3873176 (-)

Expression


Co-expression Network