G1990760 (LOC100379111)


Basic Information

Item Value
gene id G1990760
gene name LOC100379111
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 3502951 ~ 3515660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2277346
gaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagtcaaaaAGGCACTGCATGATGACATCAGGCTTGTAAAGGGAAGGGTGCTCAGGGAAAAAGAACAGTGACAGTCGAGTTGACACTGTGGAGAAGCAAAGCTCCAAACAGTATTTCACAGCTGAACCAGTGAGAAAACAGGTCAAAGGGTTGGATCTTCTTGGTGTGAAATCATCAGACAGAAGACGAGGGCAACAAACATTGCATAGTTATACTTTccttgaagaagaaaaaaaaaaaggtgcaatctagaaccctttgaagaacccttgttgattccaggtagaaagaaccctttcggttccaagtagaaccttccacagagggttctacagtACATGGAACAAAAAAGGTtttttttacctggaaccaaaaatggttctcctatggagacagccgaagaacccttttggaacccttttttctaagagtgaagAGGAACCCTTTTCACATTTAAAAAGTAAAATCAATTATACATAAATAGAAAGCTATACTTTTGAGTTTATAAAGAGTTTTTATTTACACTGAGAGGCGTGTTCAGATTAGTACCCCAAAAAACATATGGAAGAAATACAAGATGTGCCTCATTCCGTTGTATTTTGAAGACATTTATAGTGCGCGCGACAAAACTGCTCGTGAAGAAGAAGCAGGTACCACAGTATAACACGTTTGCAGTCGTTTGCTGCGGCGTTTAATTCCGTCCATAGATCTCCCCGACGTGTGAATGCTGACACAGCAGACAGCAGCAGGATACGTGTTCTAGCTGTCACCTTTATATGGTCTTAATGTCTGAACAGCAAATACATGGAAACACTCTGATCACCGCTCAGATTGGGTTTTGTTTTGCATAAAAAATAAACTCATGTGGAAAGCTGTGTGCACTTTGCAGTTGAATAATACACTGTAGCTCTATAAGTCAAATGCACACATGTTTAGTTTAGTAAGACAAGAACATGGTATTGAGATGCTAACGTTAAAACATGAACATCGAGCAGGCTAGTGATTATTGTGAAAATCATGCCCCTGTTCCTTCAGCTGCACTGATATGTTGTTTTTGCGTGGCTAAACACACAATGTTATATAATAAAAaggcacacgcacgcgcacacacgcacacacacacacacacacacacacacacacacacacacaaacaacacaggtCCACTGTTAAAACGTGGAGAAATGAGCTTATTGTTTAAAGTACAGAAGGCGTGTATACCTCAGCTGCCCTGTCTCTCCTGAAGAAACAAACTGTTGTAGTCACAATCTGTCAGATCAATCTATAGCGTGTAGGCTATATCCAGGAGACGTGTACAAGTAAGTGTTTAAAAGTCCCCAATGTAAAAGCTACTATAGTCCGTGTTCACTGGCAGTTGGCCAATGGTTTGAAAGATCCATCGGGAAGTTGTCTGAAGATGCCCCTTAACGTGTCCAGTTCTCGGGTAAGATGTTCCACTCTCTTCCGCAGTCTTTCGTTGTCCGACGCCAGCTCGATCACTTTATGCTGCGTCTCAACATTGCGCATTTTCGCCTTGTCTCTACTCTTCCTCACCGCGACGTTGTTCCTCTCCCGCCTCAACCGGTACTCCGTGCTGGCCTTGTCGACGCGTTTTTTGGATTTACCCcggtctcggtctcggtctcggtCGTCGCGTCCCATCATCTTCATGGATCCAACGGAGGACATGCTGCCGTCCCTGTGGTGTGGACTCGGGACGGGCGTCGGTGGAGGCGTCGGGTGTCCCGGTTGGAGATGCATGGTCGTCTGCGCGCAGTGCGCAATCTGGTACTGAAGATGGGATAGGTGCTGTGGCAGATGCTGGTGGGAATGGTGGTAGGTTGGAGGCATAGAATGGCTCATTTCATCTTCTTCTCTGGGCTCTTGCTTTATCGCCACAGGTCTGATTCTCGTGGACTGGTTATCGTAAATGGGTTCAAGTTTAGATGTGTCCATATACCCGGGAATACAACCATAGCCCTgctgctgatgctgctgctgctgctgttggtgGTGGTGCGCCCCCGAGCCAGAACTCACCCCGTGGGGGTAGGATTCGTACTCACTGTTCGCCAGCTTGAGTTTCTCTTGCTTCGAGCTGTTGTGGAATAGATCAGCCAGGAACTCGTCGTTGAAGGCTGCAGGGTCGATGTAAGCGCTGATGTCAATGGAGTTTTCGTTCTCACAGATCTCGCCGAGGTCTCCTCCTGCTCCGGGTCCAGCAGCGGAGGGGTCTTTGTAGCAGTAGGCGCTTTGCTGACTCTGACTCTGGGCTAGGCTGGTCATTAGGGGTCGTGGGGCGACCTCGTAGAGGTTTGGTTGCTCCATGGAATATCTATAACCCGCCAGACATGGTGAGGAGCTGCGGGAATCCAGCTTGCTCACAGTACCGGAGGAAGCCGCACTGGCTAGACGAATAAACAGGACAGCTCCTTCACAGGTGCGCTCTCCAGGTATGAAGTAAAACTCTAACTCGCCACGAGAAGCTATAAACTAAATGCCTTGAATAAAGCCTAGTGACTTTCCCTGGTACGACTGGTTTCTCGAGACTATAGTTCAAAAGTACACTGTTTTAGCTGCAGGTTGAACTACTCCAGGCTGCTGAA
>TU2277348
gcattgtaaaaaaaaaaaaacgttaaaaaGTGCTTCCTTTTCCTTTAATGTAAAAGTCTCTATATCTTAGCATTTGTTTAATAGAATCCAATAAGAGTCTAGAACATTCTAGAACATGTATAGAAGCCAATAAGAGTCTAGAACATTCTAGAACATGTATAGAAGCCAATAAGAGTCTAGAACATTCTAGAACATGTATAGAAGCCAATAAGAGTCTAGAACATTCTAGAACATGTATAGAATCCAAGAAGTCTCAGCCAGTGGTAAAGTCCAAAGTCTtacttcacagagagagagagagagagagagagagagagagagagagagagaagtcaaaaAGGCACTGCATGATGACATCAGGCTTGTAAAGGGAAGGGTGCTCAGGGAAAAAGAACAGTGACAGTCGAGTTGACACTGTGGAGAAGCAAAGCTCCAAACAGTATTTCACAGCTGAACCAGTGAGAAAACAGGTCAAAGGGTTGGATCTTCTTGGTGTGAAATCATCAGACAGAAGACGAGGGCAACAAACATTGCATAGTTATACTTTccttgaagaagaaaaaaaaaaaggtgcaatctagaaccctttgaagaacccttgttgattccaggtagaaagaaccctttcggttccaagtagaaccttccacagagggttctacagtACATGGAACAAAAAAGGTtttttttacctggaaccaaaaatggttctcctatggagacagccgaagaacccttttggaacccttttttctaagagtgaagAGGAACCCTTTTCACATTTAAAAAGTAAAATCAATTATACATAAATAGAAAGCTATACTTTTGAGTTTATAAAGAGTTTTTATTTACACTGAGAGGCGTGTTCAGATTAGTACCCCAAAAAACATATGGAAGAAATACAAGATGTGCCTCATTCCGTTGTATTTTGAAGACATTTATAGTGCGCGCGACAAAACTGCTCGTGAAGAAGAAGCAGGTACCACAGTATAACACGTTTGCAGTCGTTTGCTGCGGCGTTTAATTCCGTCCATAGATCTCCCCGACGTGTGAATGCTGACACAGCAGACAGCAGCAGGATACGTGTTCTAGCTGTCACCTTTATATGGTCTTAATGTCTGAACAGCAAATACATGGAAACACTCTGATCACCGCTCAGATTGGGTTTTGTTTTGCATAAAAAATAAACTCATGTGGAAAGCTGTGTGCACTTTGCAGTTGAATAATACACTGTAGCTCTATAAGTCAAATGCACACATGTTTAGTTTAGTAAGACAAGAACATGGTATTGAGATGCTAACGTTAAAACATGAACATCGAGCAGGCTAGTGATTATTGTGAAAATCATGCCCCTGTTCCTTCAGCTGCACTGATATGTTGTTTTTGCGTGGCTAAACACACAATGTTATATAATAAAAaggcacacgcacgcgcacacacgcacacacacacacacacacacacacacacacacacacacaaacaacacaggtCCACTGTTAAAACGTGGAGAAATGAGCTTATTGTTTAAAGTACAGAAGGCGTGTATACCTCAGCTGCCCTGTCTCTCCTGAAGAAACAAACTGTTGTAGTCACAATCTGTCAGATCAATCTATAGCGTGTAGGCTATATCCAGGAGACGTGTACAAGTAAGTGTTTAAAAGTCCCCAATGTAAAAGCTACTATAGTCCGTGTTCACTGGCAGTTGGCCAATGGTTTGAAAGATCCATCGGGAAGTTGTCTGAAGATGCCCCTTAACGTGTCCAGTTCTCGGGTAAGATGTTCCACTCTCTTCCGCAGTCTTTCGTTGTCCGACGCCAGCTCGATCACTTTATGCTGCGTCTCAACATTGCGCATTTTCGCCTTGTCTCTACTCTTCCTCACCGCGACGTTGTTCCTCTCCCGCCTCAACCGGTACTCCGTGCTGGCCTTGTCGACGCGTTTTTTGGATTTACCCcggtctcggtctcggtctcggtCGTCGCGTCCCATCATCTTCATGGATCCAACGGAGGACATGCTGCCGTCCCTGTGGTGTGGACTCGGGACGGGCGTCGGTGGAGGCGTCGGGTGTCCCGGTTGGAGATGCATGGTCGTCTGCGCGCAGTGCGCAATCTGGTACTGAAGATGGGATAGGTGCTGTGGCAGATGCTGGTGGGAATGGTGGTAGGTTGGAGGCATAGAATGGCTCATTTCATCTTCTTCTCTGGGCTCTTGCTTTATCGCCACAGGTCTGATTCTCGTGGACTGGTTATCGTAAATGGGTTCAAGTTTAGATGTGTCCATATACCCGGGAATACAACCATAGCCCTgctgctgatgctgctgctgctgctgttggtgGTGGTGCGCCCCCGAGCCAGAACTCACCCCGTGGGGGTAGGATTCGTACTCACTGTTCGCCAGCTTGAGTTTCTCTTGCTTCGAGCTGTTGTGGAATAGATCAGCCAGGAACTCGTCGTTGAAGGCTGCAGGGTCGATGTAAGCGCTGATGTCAATGGAGTTTTCGTTCTCACAGATCTCGCCGAGGTCTCCTCCTGCTCCGGGTCCAGCAGCGGAGGGGTCTTTGTAGCAGTAGGCGCTTTGCTGACTCTGACTCTGGGCTAGGCTGGTCATTAGGGGTCGTGGGGCGACCTCGTAGAGGTTTGGTTGCTCCATGGAATATCTATAACCCGCCAGACATGGTGAGGAGCTGCGGGAATCCAGCTTGCTCACAGTACCGGAGGAAGCCGCACTGGCTAGACGAATAAACAGGACAGCTCCTTCACAGGTGCGCTCTCCAGGTATGAAGTAAAACTCTAACTCGCCACGAGAAGCTATAAACTAAATGCCTTGAATAAAGCCTAGTGACTTTCCCTGGTACGACTGGTTTCTCGAGACTATAGTTCAAAAGTACACTGTTTTAGCTGCAGGTTGAACTACTCCAGGCTGCTGAA

Function

NR:

description
CCAAT/enhancer binding protein alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2277346 False 2710 TUCP 0.47 2 3502951 3515660
TU2277348 True 2936 TUCP 0.46 2 3502951 3505940

Neighbor

gene id symbol gene type direction distance location
LOC110506223 LOC106588037 coding downstream 10201 3477158 ~ 3492750 (-)
LOC118944414 NA coding downstream 317159 3183940 ~ 3186858 (-)
LOC118944401 LOC106588129 coding downstream 385708 2958963 ~ 3117243 (-)
LOC118944482 LOC106588022 coding downstream 597268 2856093 ~ 2905683 (-)
LOC118944483 NA coding downstream 629111 2871334 ~ 2873840 (-)
LOC110516700 LOC106591035 coding upstream 558385 4074045 ~ 4158044 (-)
LOC110498670 anx2a coding upstream 854722 4370382 ~ 4390993 (-)
LOC118944435 LOC106588010 coding upstream 924173 4439833 ~ 4700484 (-)
LOC110526851 vps13c coding upstream 1202992 4718652 ~ 4972108 (-)
LOC118944456 NA coding upstream 1224256 4739916 ~ 4741747 (-)
G1990784 NA non-coding downstream 22768 3479757 ~ 3480183 (-)
G1990783 NA non-coding downstream 31548 3470742 ~ 3471403 (-)
G1990776 NA non-coding downstream 55404 3447347 ~ 3447547 (-)
G1990774 NA non-coding downstream 72023 3430538 ~ 3430928 (-)
G1990773 NA non-coding downstream 72661 3429814 ~ 3430290 (-)
G1990806 NA non-coding upstream 40722 3556382 ~ 3558006 (-)
G1990817 NA non-coding upstream 71868 3587528 ~ 3588034 (-)
G1990823 NA non-coding upstream 104582 3620242 ~ 3621467 (-)
G1990828 NA non-coding upstream 114207 3629867 ~ 3630214 (-)
G1990860 NA non-coding upstream 213325 3728985 ~ 3730145 (-)
G1990495 LOC106562810 other downstream 214453 3287167 ~ 3288498 (-)
G1990296 NA other downstream 546432 2955410 ~ 2956519 (-)
LOC110519438 plekhg4 other downstream 716465 2589463 ~ 2786486 (-)
G1990907 NA other upstream 294545 3810205 ~ 3810560 (-)
G1990926 NA other upstream 356940 3872600 ~ 3873176 (-)
G1990927 LOC106591093 other upstream 359255 3873304 ~ 3880013 (-)

Expression


Co-expression Network